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Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 28 20:45:32 2011 UTC (8 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_2, mgrast_version_3_2, rast_rel_2011_0928
Changes since 1.20: +15 -0 lines
Diff to previous 1.20
Add kmerDataset selection support.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 29 16:21:39 2010 UTC (9 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, myrast_33, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.19: +1 -1 lines
Diff to previous 1.19
make invalid rp a fatal error

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 29 16:21:04 2010 UTC (9 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.18: +3 -1 lines
Diff to previous 1.18
add rp4 to allowed-scripts list

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 29 20:06:51 2010 UTC (9 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0827, rast_rel_2010_0928
Changes since 1.17: +2 -1 lines
Diff to previous 1.17
Add rapid_propagation3 as a valid rp script.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 17 21:33:40 2010 UTC (9 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.16: +5 -1 lines
Diff to previous 1.16
Allow some users to be configured to use the old rapid propagation code.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 14 16:43:51 2010 UTC (9 years, 7 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Changes since 1.15: +1 -1 lines
Diff to previous 1.15
fix logging error

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 14 16:16:29 2010 UTC (9 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.14: +11 -1 lines
Diff to previous 1.14
Add support for choosing rapid propagation script via the config file.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 4 20:30:23 2010 UTC (9 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0118
Changes since 1.13: +2 -1 lines
Diff to previous 1.13
mods from batch rasting

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 23 21:31:50 2009 UTC (10 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_07_09, rast_rel_2009_0925
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
typo fixes

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 23 21:18:48 2009 UTC (10 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.11: +26 -0 lines
Diff to previous 1.11
add call_using_glimmer

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 18 16:54:56 2009 UTC (10 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_05_18
Changes since 1.10: +27 -0 lines
Diff to previous 1.10
rollup of production fixes

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 5 22:39:29 2008 UTC (11 years, 1 month ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26
Changes since 1.9: +7 -1 lines
Diff to previous 1.9
When splitting, obey $FIG_Config::rast_contig_ambig_split_size

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 17 16:44:21 2008 UTC (11 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_release_2008_09_29
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
fix typo

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 17 16:12:32 2008 UTC (11 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.7: +12 -0 lines
Diff to previous 1.7
Add --code argument to rapid_propagation.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 10 20:50:55 2007 UTC (12 years, 1 month ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2008_04_23, rast_rel_2008_06_16
Changes since 1.6: +19 -3 lines
Diff to previous 1.6
Disable contig splitting, quality check, and correction when keep_genecalls is enabled.

Ensure that *.running is set to "no" in all rp_* scripts, both on normal exit and in &fatal.

Fix error returns for failed quality check execution.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 5 21:43:18 2007 UTC (12 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.5: +1 -0 lines
Diff to previous 1.5
fix compile errors

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 8 19:20:20 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.4: +1 -0 lines
Diff to previous 1.4
add error reason to metadata
use expanded sims instead of unexpanded sims in autoassign

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 1 16:26:26 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.3: +4 -0 lines
Diff to previous 1.3
Add scenario computation.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 9 20:57:37 2007 UTC (12 years, 7 months ago) by olson
Branch: MAIN
Changes since 1.2: +17 -1 lines
Diff to previous 1.2
Add support for keeping gene calls (add --keep to rapid_propagation invocation when
metadata keep_genecalls is set).

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 14 14:02:06 2007 UTC (12 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
fix bug in fatal()

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 1 20:03:54 2007 UTC (12 years, 10 months ago) by olson
Branch: MAIN
rollup of 48hr fixes

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