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revision 1.9, Tue Jun 17 16:44:21 2008 UTC revision 1.10, Wed Nov 5 22:39:29 2008 UTC
# Line 84  Line 84 
84  my $formatted = "$raw_dir/contigs";  my $formatted = "$raw_dir/contigs";
85  my @cmd;  my @cmd;
86    
87    my $split_size = 3;
88    if ($FIG_Config::rast_contig_ambig_split_size =~ /^\d+$/)
89    {
90        $split_size = $FIG_Config::rast_contig_ambig_split_size;
91    }
92    
93  if ($keep_genecalls)  if ($keep_genecalls)
94  {  {
95      my $reformat_log = "$errdir/reformat_contigs.stderr";      my $reformat_log = "$errdir/reformat_contigs.stderr";
# Line 94  Line 100 
100  {  {
101      my $reformat_split_log = "$errdir/reformat_contigs_split.stderr";      my $reformat_split_log = "$errdir/reformat_contigs_split.stderr";
102    
103      @cmd = ("$FIG_Config::bin/reformat_contigs", "-v", "-logfile=$reformat_split_log", "-split", $unformatted, $formatted);      @cmd = ("$FIG_Config::bin/reformat_contigs", "-v", "-logfile=$reformat_split_log", "-split=$split_size", $unformatted, $formatted);
104  }  }
105    
106  print "Run @cmd\n";  print "Run @cmd\n";

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