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revision 1.7, Wed Oct 10 20:50:55 2007 UTC revision 1.8, Tue Jun 17 16:12:32 2008 UTC
# Line 65  Line 65 
65  }  }
66    
67  #  #
68    # Determine genetic code.
69    #
70    
71    my $genetic_code = $meta->get_metadata("genome.genetic_code");
72    if (!define($genetic_code))
73    {
74        $meta->add_log_entry("Genetic code not defined; defaulting to 11");
75        $genetic_code = 11;
76    }
77    
78    #
79  # Reformat and split.  # Reformat and split.
80  #  #
81  # Only do this if we are doing gene calling.  # Only do this if we are doing gene calling.
# Line 119  Line 130 
130    
131  @cmd = ("$FIG_Config::bin/rapid_propagation", "--errdir", $errdir,  @cmd = ("$FIG_Config::bin/rapid_propagation", "--errdir", $errdir,
132          @keep_genecalls_flag,          @keep_genecalls_flag,
133            "--code", $genetic_code,
134          "--meta", $meta_file,          "--meta", $meta_file,
135          "--tmpdir", $tmpdir,          "--tmpdir", $tmpdir,
136          $raw_dir, $rp_dir);          $raw_dir, $rp_dir);

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