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revision 1.2, Wed Feb 14 14:02:06 2007 UTC revision 1.3, Wed May 9 20:57:37 2007 UTC
# Line 84  Line 84 
84    
85  &FIG::verify_dir("$jobdir/rp");  &FIG::verify_dir("$jobdir/rp");
86    
87    #
88    # Determine if we are keeping the original gene calls.
89    #
90    
91    my $keep_genecalls = $meta->get_metadata("keep_genecalls");
92    my @keep_genecalls_flag;
93    
94    if ($keep_genecalls)
95    {
96        $meta->add_log_entry($0, "Keeping original gene calls");
97        @keep_genecalls_flag = ("--keep");
98    }
99    
100  @cmd = ("$FIG_Config::bin/rapid_propagation", "--errdir", $errdir,  @cmd = ("$FIG_Config::bin/rapid_propagation", "--errdir", $errdir,
101          "--meta", $meta_file, "--tmpdir", $tmpdir, $raw_dir, $rp_dir);          @keep_genecalls_flag,
102            "--meta", $meta_file,
103            "--tmpdir", $tmpdir,
104            $raw_dir, $rp_dir);
105  print "Run @cmd\n";  print "Run @cmd\n";
106  $meta->add_log_entry($0, ['running', @cmd]);  $meta->add_log_entry($0, ['running', @cmd]);
107    

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