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Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 8 20:18:46 2009 UTC (10 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.8: +14 -3 lines
Diff to previous 1.8
Add support for pulling sims from sims server and submitting only those that don't match to be computed.

Add use of $FIG_Config::rast_sims_data to point at the directory holding
nr & peg.synonyms; explicitly here for the purposes of more easily updating
to new sims databases.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 18 16:57:32 2009 UTC (10 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_05_18
Changes since 1.7: +1 -0 lines
Diff to previous 1.7
mark sims done when postprocess finishes

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 5 20:21:40 2008 UTC (11 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_release_2008_09_29
Changes since 1.6: +2 -1 lines
Diff to previous 1.6
Use FIG::find_fig_executable() to determine the proper path for index_sims_File.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 18 18:24:40 2007 UTC (11 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.5: +1 -1 lines
Diff to previous 1.5
fix bad sims expansion bug.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 31 17:02:01 2007 UTC (12 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.4: +16 -0 lines
Diff to previous 1.4
new stuf

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 9 20:48:00 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.3: +101 -28 lines
Diff to previous 1.3
invoke second pass of assess_gene_call_quality with the -no-fatal flag

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 15 21:43:51 2007 UTC (12 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.2: +93 -19 lines
Diff to previous 1.2
Add bbhs support,changes to postproc sims to compute expanded sims the new way

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 30 20:18:23 2006 UTC (12 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.1: +77 -0 lines
Diff to previous 1.1
create and index expanded sims in the postproc; use them in FIGV::sims.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 26 14:14:39 2006 UTC (12 years, 11 months ago) by olson
Branch: MAIN
sims postprocessing for 48-hr

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