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Revision 1.2 - (download) (as text) (annotate)
Mon May 5 14:11:10 2008 UTC (11 years, 7 months ago) by mkubal
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.1: +19 -20 lines
v2

use Data::Dumper;
use Carp;
use FIG_Config;

use FIGV;

my $jobdir = shift(@ARGV);
my $genome = shift(@ARGV);
my $date = localtime();

if(! -d "$jobdir/rp/$genome/attributes"){
    `mkdir $jobdir/rp/$genome/attributes`;
}

my $fig = new FIGV("$jobdir/rp/$genome");

my $of = $genome.".sim2human.txt";
open(IN,"/vol/seed-attributes/computation_results/Sim2Human/$of");
open(OUT,">$jobdir/rp/$genome/attributes/similar_to_human.txt");
my %sim;
while($_ = <IN>){
    if($_ =~/(fig\|\d+.\d+.peg.\d+)/){
	    my $peg = $1;
	    $sim{$peg} = 1;
	}
}
close(IN);

my @pegs = $fig->pegs_of($genome);
foreach my $peg (@pegs){
    if($sim{$peg}){
	print OUT "$peg\tsimilar_to_human\tyes\n";
    }
    else{
	    print OUT "$peg\tsimilar_to_human\tno\n";
	}
}
$date = `date`;
chomp($date);
print OUT "$genome\tsimilar_to_human_computed_for_all_pegs\t$date\n";
close(OUT);


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