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revision 1.1, Wed Oct 3 20:55:54 2007 UTC revision 1.4, Fri Oct 12 15:35:53 2007 UTC
# Line 35  Line 35 
35  my $orgdir = "$jobdir/rp/$genome";  my $orgdir = "$jobdir/rp/$genome";
36  my $contigs = "$orgdir/contigs";  my $contigs = "$orgdir/contigs";
37    
38    $ENV{PATH} = join(":", $ENV{PATH}, $FIG_Config::bin, $FIG_Config::ext_bin);
39    
40  &FIG::verify_dir($work);  &FIG::verify_dir($work);
41  chdir $work or &fatal("chdir $work failed: $!");  chdir $work or &fatal("chdir $work failed: $!");
42    
# Line 81  Line 83 
83    
84  $meta->add_log_entry($0, "finish glimmer computation on $jobdir");  $meta->add_log_entry($0, "finish glimmer computation on $jobdir");
85  $meta->set_metadata("status.glimmer", "complete");  $meta->set_metadata("status.glimmer", "complete");
86    $meta->set_metadata("glimmer.running", "no");
87  exit(0);  exit(0);
88    
89  sub run  sub run
# Line 98  Line 101 
101      if ($meta)      if ($meta)
102      {      {
103          $meta->add_log_entry($0, ['fatal error', $msg]);          $meta->add_log_entry($0, ['fatal error', $msg]);
104          $meta->set_metadata("status.bbhs", "error");          $meta->set_metadata("status.glimmer", "error");
105            $meta->set_metadata("glimmer.running", "no");
106      }      }
107    
108      croak "$0: $msg";      croak "$0: $msg";

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