[Bio] / FortyEight / rp_compute_crc64_for_pegs_in_genome.pl Repository:
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Revision 1.1 - (download) (as text) (annotate)
Wed Feb 27 23:27:19 2008 UTC (11 years, 11 months ago) by mkubal
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
new

use FIGV;

my $jobdir = shift(@ARGV);
my $genome = shift(@ARGV);

my $fig = new FIGV("$jobdir/rp/$genome");

my @pegs = $fig->pegs_of($genome);
foreach my $peg (@pegs){
    my $seq = $fig->get_translation($peg);
    if($peg =~/fig\|(\d+.\d+.peg.\d+)/){
	$id = $1;
	`python crc64.py $id $seq >> $jobdir/rp/$genome/crc64_for_pegs_of_$genome.txt`;
    }
}

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