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Annotation of /FortyEight/rp_compute_crc64_for_pegs_in_genome.pl

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1 : mkubal 1.1 use FIGV;
2 :    
3 :     my $jobdir = shift(@ARGV);
4 :     my $genome = shift(@ARGV);
5 :    
6 :     my $fig = new FIGV("$jobdir/rp/$genome");
7 :    
8 :     my @pegs = $fig->pegs_of($genome);
9 :     foreach my $peg (@pegs){
10 :     my $seq = $fig->get_translation($peg);
11 :     if($peg =~/fig\|(\d+.\d+.peg.\d+)/){
12 :     $id = $1;
13 :     `python crc64.py $id $seq >> $jobdir/rp/$genome/crc64_for_pegs_of_$genome.txt`;
14 :     }
15 :     }

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