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revision 1.4, Fri Jun 8 19:20:20 2007 UTC revision 1.6, Thu Jul 17 20:43:53 2008 UTC
# Line 8  Line 8 
8  use FIG_Config;  use FIG_Config;
9  use File::Basename;  use File::Basename;
10  use GenomeMeta;  use GenomeMeta;
11    use Carp 'croak';
12    
13  @ARGV == 1 or die "Usage: $0 job-dir\n";  @ARGV == 1 or die "Usage: $0 job-dir\n";
14    
# Line 48  Line 49 
49    
50  open(TBL, "<$tbl") or &fatal("Cannot open tbl file $tbl: $!");  open(TBL, "<$tbl") or &fatal("Cannot open tbl file $tbl: $!");
51    
52  my $cmd = "$FIG_Config::bin/auto_assign sims=$simfile > $jobdir/rp/$genome/proposed_non_ff_functions";  my $cmd = "$FIG_Config::bin/auto_assign -orgdir $jobdir/rp/$genome > $jobdir/rp/$genome/proposed_non_ff_functions";
53  print "running $cmd\n";  print "running $cmd\n";
54  open(AA, "| $cmd")  open(AA, "| $cmd")
55          or &fatal("aa failed: $!");          or &fatal("aa failed: $!");

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