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Annotation of /FortyEight/rp_HMM_PFAM_search_on_timelogic.pl

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1 : mkubal 1.1 #provide job dir as first argument and genome id as second argument
2 :     my $jobdir = shift(@ARGV);
3 :     my $genome = shift(@ARGV);
4 :     $input_file = $jobdir."/rp/$genome/Features/peg/fasta";
5 :     $output_file = $jobdir."/$genome_PFAM_HMM_search_results.txt";
6 :     $command = "/decypher/cli/bin/dc_template_rt -template hmm_aa_vs_hmm -query $input_file -targ HMMs_of_global_pfam > $output_file";
7 :     system $command;

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