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revision 1.1, Tue Sep 25 18:45:53 2007 UTC revision 1.2, Wed Oct 31 23:16:50 2007 UTC
# Line 68  Line 68 
68    
69  my $template = "tera-blastp-tabular";  my $template = "tera-blastp-tabular";
70  my $target = "nr-import-" . $job->id;  my $target = "nr-import-" . $job->id;
71  my $chunk_size = 100_000;  my $chunk_size = 1_000_000;
72    
73  #  #
74  # We first need to ensure that the NR is in place as a target.  # We first need to ensure that the NR is in place as a target.
# Line 91  Line 91 
91  if (!$target_ok)  if (!$target_ok)
92  {  {
93      $stage->run_process("dc_new_target_rt", "/decypher/cli/bin/dc_new_target_rt",      $stage->run_process("dc_new_target_rt", "/decypher/cli/bin/dc_new_target_rt",
94                            -priority => '5',
95                          -template => 'format_aa_into_aa',                          -template => 'format_aa_into_aa',
96                          -source => "$jobdir/nr",                          -source => "$jobdir/nr",
97                          -targ => $target);                          -targ => $target);
# Line 129  Line 130 
130      my($id, $in, $nr, $args, $out, $err) = split(/\t/, $ent);      my($id, $in, $nr, $args, $out, $err) = split(/\t/, $ent);
131    
132      my $tl_id;      my $tl_id;
133      my $fh = $stage->open_file("dc_template -template $template -query $in -targ $target |");      my $fh = $stage->open_file("dc_template -priority 5 -template $template -query $in -targ $target |");
134      while (<$fh>)      while (<$fh>)
135      {      {
136          print $_;          print $_;

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