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Revision 1.37 - (view) (download) (annotate) - [select for diffs]
Wed Jan 27 17:37:00 2010 UTC (9 years, 10 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, myrast_33, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.36: +1 -1 lines
Diff to previous 1.36
add build of rastq.pl

Revision 1.36 - (view) (download) (annotate) - [select for diffs]
Fri Jan 15 20:35:59 2010 UTC (9 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.35: +2 -1 lines
Diff to previous 1.35
Add job-completion email script (since we send from both the main pipeline
and from the replicate_job script)

Revision 1.35 - (view) (download) (annotate) - [select for diffs]
Fri Jan 15 16:15:41 2010 UTC (9 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.34: +2 -1 lines
Diff to previous 1.34
Add job caching support.

Revision 1.34 - (view) (download) (annotate) - [select for diffs]
Mon Jan 4 20:30:23 2010 UTC (9 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.33: +1 -1 lines
Diff to previous 1.33
mods from batch rasting

Revision 1.33 - (view) (download) (annotate) - [select for diffs]
Thu Oct 29 21:21:37 2009 UTC (10 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.32: +5 -2 lines
Diff to previous 1.32
batch rast support

Revision 1.32 - (view) (download) (annotate) - [select for diffs]
Wed Jul 8 20:18:46 2009 UTC (10 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_07_09, rast_rel_2009_0925
Changes since 1.31: +2 -1 lines
Diff to previous 1.31
Add support for pulling sims from sims server and submitting only those that don't match to be computed.

Add use of $FIG_Config::rast_sims_data to point at the directory holding
nr & peg.synonyms; explicitly here for the purposes of more easily updating
to new sims databases.

Revision 1.31 - (view) (download) (annotate) - [select for diffs]
Thu Mar 12 21:20:40 2009 UTC (10 years, 8 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_03_26, rast_rel_2009_05_18
Changes since 1.30: +2 -1 lines
Diff to previous 1.30
plasmid rast makefile changes

Revision 1.30 - (view) (download) (annotate) - [select for diffs]
Mon Dec 22 23:33:47 2008 UTC (10 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_02_05
Changes since 1.29: +11 -2 lines
Diff to previous 1.29
Add support for suexec - if CGI directory contains "public_html", ensure that any
installed CGI scripts and the CGI directory itself are not group or world writable.

Revision 1.29 - (view) (download) (annotate) - [select for diffs]
Fri Nov 7 22:42:29 2008 UTC (11 years, 1 month ago) by olson
Branch: MAIN
CVS Tags: mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_rel_2008_11_24, rast_rel_2008_12_18
Changes since 1.28: +2 -1 lines
Diff to previous 1.28
First working versoin of the peer sims code.

Revision 1.28 - (view) (download) (annotate) - [select for diffs]
Mon May 5 14:13:38 2008 UTC (11 years, 7 months ago) by mkubal
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, rast_2008_0924, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_release_2008_09_29
Changes since 1.27: +5 -0 lines
Diff to previous 1.27
v2

Revision 1.27 - (view) (download) (annotate) - [select for diffs]
Mon Apr 7 20:07:27 2008 UTC (11 years, 8 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.26: +2 -1 lines
Diff to previous 1.26
Add reset-failed-rp which will fix a job which RP broke for.

Revision 1.26 - (view) (download) (annotate) - [select for diffs]
Wed Apr 2 18:22:12 2008 UTC (11 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.25: +5 -4 lines
Diff to previous 1.25
remove no longer used modules from the makefile

Revision 1.25 - (view) (download) (annotate) - [select for diffs]
Mon Feb 11 21:45:26 2008 UTC (11 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.24: +1 -1 lines
Diff to previous 1.24
Add support for deadline scheduling & job export.

Revision 1.24 - (view) (download) (annotate) - [select for diffs]
Wed Feb 6 22:16:37 2008 UTC (11 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.23: +1 -1 lines
Diff to previous 1.23
Support lustre work directory.

Revision 1.23 - (view) (download) (annotate) - [select for diffs]
Wed Oct 31 23:16:50 2007 UTC (12 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.22: +3 -4 lines
Diff to previous 1.22
Rollup of import changes.

Revision 1.22 - (view) (download) (annotate) - [select for diffs]
Tue Oct 23 18:58:31 2007 UTC (12 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.21: +2 -1 lines
Diff to previous 1.21
Add reset_stage.

Revision 1.21 - (view) (download) (annotate) - [select for diffs]
Thu Oct 11 18:32:16 2007 UTC (12 years, 1 month ago) by olson
Branch: MAIN
Changes since 1.20: +5 -4 lines
Diff to previous 1.20
attribute indexer

Revision 1.20 - (view) (download) (annotate) - [select for diffs]
Thu Oct 11 17:01:32 2007 UTC (12 years, 1 month ago) by mkubal
Branch: MAIN
Changes since 1.19: +4 -1 lines
Diff to previous 1.19
adding PHOBIUS and CELLO scripts

Revision 1.19 - (view) (download) (annotate) - [select for diffs]
Fri Oct 5 17:25:53 2007 UTC (12 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.18: +1 -1 lines
Diff to previous 1.18
Updates to the Teach stuff. Small mod to build_nr to support condtional setting of sort buffer size.

Revision 1.18 - (view) (download) (annotate) - [select for diffs]
Wed Oct 3 20:55:54 2007 UTC (12 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.17: +3 -1 lines
Diff to previous 1.17
Pipeline scripts for computing critica and glimmer calls for the Teach project.

Revision 1.17 - (view) (download) (annotate) - [select for diffs]
Fri Sep 28 20:27:06 2007 UTC (12 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.16: +2 -1 lines
Diff to previous 1.16
remove syntax check

Revision 1.16 - (view) (download) (annotate) - [select for diffs]
Tue Sep 25 19:06:28 2007 UTC (12 years, 2 months ago) by mkubal
Branch: MAIN
Changes since 1.15: +2 -2 lines
Diff to previous 1.15
added pfam attribute generation scripts

Revision 1.15 - (view) (download) (annotate) - [select for diffs]
Tue Sep 25 18:45:53 2007 UTC (12 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.14: +1 -1 lines
Diff to previous 1.14
Add sim submission script

Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Thu Sep 13 19:56:29 2007 UTC (12 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.13: +2 -1 lines
Diff to previous 1.13
new scripts

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Wed Sep 5 20:59:03 2007 UTC (12 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.12: +6 -1 lines
Diff to previous 1.12
Rollup of RAST->SEED import stuff.

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Thu Jul 26 19:35:21 2007 UTC (12 years, 4 months ago) by parrello
Branch: MAIN
Changes since 1.11: +5 -5 lines
Diff to previous 1.11
Converted cp -p to cp to avoid a problem with makefiles.

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Fri Jun 1 16:26:26 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
Add scenario computation.

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Thu May 31 17:02:01 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.9: +2 -1 lines
Diff to previous 1.9
new stuf

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Fri May 11 19:18:04 2007 UTC (12 years, 7 months ago) by paarmann
Branch: MAIN
Changes since 1.8: +3 -1 lines
Diff to previous 1.8
*** empty log message ***

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Tue Feb 27 21:00:27 2007 UTC (12 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7
move email support to Job48
remove stopligth status
make quality_check set up correction.status and correction.request if corrections needed

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Thu Feb 1 20:03:54 2007 UTC (12 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.6: +2 -1 lines
Diff to previous 1.6
rollup of 48hr fixes

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Tue Jan 16 21:09:07 2007 UTC (12 years, 10 months ago) by paczian
Branch: MAIN
Changes since 1.5: +9 -6 lines
Diff to previous 1.5
added subdirectory WebPage

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Mon Jan 15 21:43:51 2007 UTC (12 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
Add bbhs support,changes to postproc sims to compute expanded sims the new way

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Fri Dec 1 21:39:11 2006 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.3: +2 -1 lines
Diff to previous 1.3
48hr fixes

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Wed Nov 22 21:01:42 2006 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.2: +1 -1 lines
Diff to previous 1.2
48hr mods

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Tue Nov 14 17:26:14 2006 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.1: +9 -1 lines
Diff to previous 1.1
Adding some utility stuff and the start of the master-check script.

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Fri Nov 10 17:05:11 2006 UTC (13 years ago) by paarmann
Branch: MAIN
Branch point for: fig
Initial revision

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