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revision 1.9, Fri May 11 19:18:04 2007 UTC revision 1.15, Tue Sep 25 18:45:53 2007 UTC
# Line 33  Line 33 
33    
34  PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl  \  PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl  \
35          rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \          rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \
36          find-genomes-not-in-seed rp_rapid_propagation.pl  rp_glue_contigs.pl  rp_compute_pchs.pl          find-genomes-not-in-seed rp_rapid_propagation.pl  rp_glue_contigs.pl  rp_compute_pchs.pl \
37            migrate_job.pl rp_scenarios.pl \
38            create_import_job.pl import_pipeline.pl imp_build_nr.pl imp_prepare_sims.pl imp_process_sims.pl \
39            imp_merge_sims.pl imp_check_tl_sim_status.pl  imp_finish_tl_sims.pl  \
40            imp_salvage.pl imp_submit_tl_sims.pl \
41            validate_tl_sims.pl
42    
43    
44  INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))  INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))
45  PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))  PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))
# Line 74  Line 80 
80          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
81    
82  $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%  $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%
83          cp -p $< $(cgidir)/Html/.          cp $< $(cgidir)/Html/.
84    
85  #  #
86  # We have a config problem at the moment.  I do not want to depend  # We have a config problem at the moment.  I do not want to depend
# Line 94  Line 100 
100          if [ ! -d $$tgt_dir ] ; then \          if [ ! -d $$tgt_dir ] ; then \
101                  mkdir $$tgt_dir; \                  mkdir $$tgt_dir; \
102          fi          fi
103          cp -p  $< $@          cp  $< $@
104    
105  $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)  $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)
106            perl -I.. -c $<
107          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
108    

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