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revision 1.10, Thu May 31 17:02:01 2007 UTC revision 1.27, Mon Apr 7 20:07:27 2008 UTC
# Line 24  Line 24 
24    
25  PERLCGISCRIPTS := $(subst .pl,,$(wildcard *.cgi))  PERLCGISCRIPTS := $(subst .pl,,$(wildcard *.cgi))
26    
27  PERL_LIB = $(wildcard *.pm) \  PERL_LIB = $(wildcard *.pm)
28             $(wildcard WebPage/*.pm) \  
29             $(wildcard WebApp/*.pm) \  #          $(wildcard WebPage/*.pm) \
30             $(wildcard WebApplicationServer/*.pm)  #           $(wildcard WebApp/*.pm) \
31    #           $(wildcard WebApplicationServer/*.pm)
32    
33  WEBPAGES := $(wildcard *.tmpl)  WEBPAGES := $(wildcard *.tmpl)
34    
35  PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl  \  PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl  \
36          rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \          rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \
37          find-genomes-not-in-seed rp_rapid_propagation.pl  rp_glue_contigs.pl  rp_compute_pchs.pl \          find-genomes-not-in-seed rp_rapid_propagation.pl  rp_glue_contigs.pl  rp_compute_pchs.pl \
38          migrate_job.pl          migrate_job.pl rp_scenarios.pl \
39            create_import_job.pl import_pipeline.pl imp_build_nr.pl imp_prepare_sims.pl imp_process_sims.pl \
40            imp_merge_sims.pl imp_check_tl_sim_status.pl  imp_finish_tl_sims.pl  \
41            imp_salvage.pl imp_submit_tl_sims.pl \
42            rp_HMM_PFAM_search_on_timelogic.pl rp_PFAM_attribute_generation.pl rp_make_PFAM_HMM_derived_attributes.pl \
43            validate_tl_sims.pl \
44            rp_critica.pl rp_glimmer.pl rp_gen_teach_sims.pl rp_index_attributes.pl \
45            rp_HMM_PFAM_search_on_timelogic.pl rp_PFAM_attribute_generation.pl rp_make_PFAM_HMM_derived_attributes.pl \
46            rp_CELLO_attribute_generation.pl rp_CELLO_search.pl rp_make_CELLO_attributes.pl \
47            rp_PHOBIUS_attribute_generation.pl rp_PHOBIUS_search.pl rp_make_PHOBIUS_attributes.pl \
48            get_nmpdr_group.pl reset_stage.pl rp_lustre_finish.pl rp_write_exports.pl \
49            reset-failed-rp.pl
50    
51    
52  INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))  INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))
53  PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))  PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))
# Line 75  Line 88 
88          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
89    
90  $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%  $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%
91          cp -p $< $(cgidir)/Html/.          cp $< $(cgidir)/Html/.
92    
93  #  #
94  # We have a config problem at the moment.  I do not want to depend  # We have a config problem at the moment.  I do not want to depend
# Line 95  Line 108 
108          if [ ! -d $$tgt_dir ] ; then \          if [ ! -d $$tgt_dir ] ; then \
109                  mkdir $$tgt_dir; \                  mkdir $$tgt_dir; \
110          fi          fi
111          cp -p  $< $@          cp  $< $@
112    
113  $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)  $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)
114          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
115    
116    #       perl -I.. -c $<
117    

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