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revision 1.10, Thu May 31 17:02:01 2007 UTC revision 1.20, Thu Oct 11 17:01:32 2007 UTC
# Line 34  Line 34 
34  PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl  \  PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl  \
35          rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \          rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \
36          find-genomes-not-in-seed rp_rapid_propagation.pl  rp_glue_contigs.pl  rp_compute_pchs.pl \          find-genomes-not-in-seed rp_rapid_propagation.pl  rp_glue_contigs.pl  rp_compute_pchs.pl \
37          migrate_job.pl          migrate_job.pl rp_scenarios.pl \
38            create_import_job.pl import_pipeline.pl imp_build_nr.pl imp_prepare_sims.pl imp_process_sims.pl \
39            imp_merge_sims.pl imp_check_tl_sim_status.pl  imp_finish_tl_sims.pl  \
40            imp_salvage.pl imp_submit_tl_sims.pl \
41            rp_HMM_PFAM_search_on_timelogic.pl rp_PFAM_attribute_generation.pl rp_make_PFAM_HMM_derived_attributes.pl \
42            validate_tl_sims.pl \
43            rp_critica.pl rp_glimmer.pl rp_gen_teach_sims.pl \
44            rp_HMM_PFAM_search_on_timelogic.pl rp_PFAM_attribute_generation.pl rp_make_PFAM_HMM_derived_attributes.pl \
45            rp_CELLO_attribute_generation rp_CELLO_search rp_make_CELLO_attributes \
46            rp_PHOBIUS_attribute_generation rp_PHOBIUS_search rp_make_PHOBIUS_attributes
47    
48    
49  INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))  INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))
50  PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))  PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))
# Line 75  Line 85 
85          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
86    
87  $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%  $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%
88          cp -p $< $(cgidir)/Html/.          cp $< $(cgidir)/Html/.
89    
90  #  #
91  # We have a config problem at the moment.  I do not want to depend  # We have a config problem at the moment.  I do not want to depend
# Line 95  Line 105 
105          if [ ! -d $$tgt_dir ] ; then \          if [ ! -d $$tgt_dir ] ; then \
106                  mkdir $$tgt_dir; \                  mkdir $$tgt_dir; \
107          fi          fi
108          cp -p  $< $@          cp  $< $@
109    
110  $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)  $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)
111          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
112    
113    #       perl -I.. -c $<
114    

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