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revision 1.10, Thu May 31 17:02:01 2007 UTC revision 1.19, Fri Oct 5 17:25:53 2007 UTC
# Line 34  Line 34 
34  PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl  \  PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl  \
35          rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \          rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \
36          find-genomes-not-in-seed rp_rapid_propagation.pl  rp_glue_contigs.pl  rp_compute_pchs.pl \          find-genomes-not-in-seed rp_rapid_propagation.pl  rp_glue_contigs.pl  rp_compute_pchs.pl \
37          migrate_job.pl          migrate_job.pl rp_scenarios.pl \
38            create_import_job.pl import_pipeline.pl imp_build_nr.pl imp_prepare_sims.pl imp_process_sims.pl \
39            imp_merge_sims.pl imp_check_tl_sim_status.pl  imp_finish_tl_sims.pl  \
40            imp_salvage.pl imp_submit_tl_sims.pl \
41            rp_HMM_PFAM_search_on_timelogic.pl rp_PFAM_attribute_generation.pl rp_make_PFAM_HMM_derived_attributes.pl \
42            validate_tl_sims.pl \
43            rp_critica.pl rp_glimmer.pl rp_gen_teach_sims.pl
44    
45    
46  INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))  INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))
47  PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))  PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))
# Line 75  Line 82 
82          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
83    
84  $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%  $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%
85          cp -p $< $(cgidir)/Html/.          cp $< $(cgidir)/Html/.
86    
87  #  #
88  # We have a config problem at the moment.  I do not want to depend  # We have a config problem at the moment.  I do not want to depend
# Line 95  Line 102 
102          if [ ! -d $$tgt_dir ] ; then \          if [ ! -d $$tgt_dir ] ; then \
103                  mkdir $$tgt_dir; \                  mkdir $$tgt_dir; \
104          fi          fi
105          cp -p  $< $@          cp  $< $@
106    
107  $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)  $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)
108          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )          ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
109    
110    #       perl -I.. -c $<
111    

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