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1 : paarmann 1.1 #
2 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 :     #
19 :     # seed_running_perl.fragement is the piece of perl code that
20 :     # checks to see if the seed server is up, and prints a message and returns
21 :     # if it is not.
22 :     #
23 :     SEED_RUNNING_PERL = seed_running_perl.fragment
24 :    
25 :     PERLCGISCRIPTS := $(subst .pl,,$(wildcard *.cgi))
26 :    
27 : paczian 1.6 PERL_LIB = $(wildcard *.pm) \
28 : paarmann 1.9 $(wildcard WebPage/*.pm) \
29 :     $(wildcard WebApp/*.pm) \
30 :     $(wildcard WebApplicationServer/*.pm)
31 : paczian 1.6
32 :     WEBPAGES := $(wildcard *.tmpl)
33 :    
34 : olson 1.4 PERL_BIN_SRC = check_jobs.pl rp_chunk_sims.pl rp_compute_sims.pl rp_postproc_sims.pl \
35 : olson 1.7 rp_auto_assign.pl rp_quality_check.pl rp_correction.pl rp_compute_bbhs.pl \
36 : olson 1.10 find-genomes-not-in-seed rp_rapid_propagation.pl rp_glue_contigs.pl rp_compute_pchs.pl \
37 :     migrate_job.pl
38 : olson 1.2
39 : paarmann 1.1 INST_PERL_LIB = $(foreach var, $(PERL_LIB), $(libdir)/$(PKGNAME)/$(var))
40 : olson 1.2 PERL_BIN = $(subst .pl,, $(PERL_BIN_SRC))
41 :     INST_PERL_BIN = $(foreach var, $(PERL_BIN), $(bindir)/$(var))
42 : paarmann 1.1
43 :     all: lib
44 :    
45 :     show:
46 :     @echo cgis $(foreach var, $(PERLCGISCRIPTS), $(cgidir)/$(var))
47 :     @echo top $(TOPDIR)
48 :     @echo pkg $(PKGNAME)
49 :     @echo toolhdr $(TOOL_HDR)
50 : olson 1.2
51 :     bin: $(INST_PERL_BIN)
52 : paarmann 1.1
53 : paczian 1.6 lib: $(foreach var, $(PERLCGISCRIPTS), $(cgidir)/$(var)) copy_htaccess $(INST_PERL_LIB) $(foreach var, $(WEBPAGES), $(cgidir)/Html/$(var))
54 : paarmann 1.1
55 :     htaccess_src = $(RTROOT)/config/all.htaccess
56 :     htaccess_dst = $(cgidir)/.htaccess
57 :    
58 :     copy_htaccess: force
59 :     if test -f $(htaccess_src); then \
60 :     cp $(htaccess_src) $(htaccess_dst) ; \
61 :     fi
62 :    
63 :     force:
64 :    
65 :     schematools:
66 :     stDeclFiles:
67 :     stGeneratedFiles:
68 :    
69 :    
70 :     test:
71 :    
72 :     clean:
73 :    
74 :     $(cgidir)/%: $(TOPDIR)/$(PKGNAME)/% $(TOOL_HDR)
75 :     ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
76 :    
77 : paczian 1.6 $(cgidir)/Html/%: $(TOPDIR)/$(PKGNAME)/%
78 :     cp -p $< $(cgidir)/Html/.
79 :    
80 : paarmann 1.1 #
81 :     # We have a config problem at the moment. I do not want to depend
82 :     # upon explicit calls to other packages, as done here nor do I want
83 :     # to assume that package was built first. For now, we live with this.
84 :    
85 :     #$(TOOL_HDR):
86 :     # cd $(workdir); $(TOPDIR)/FigCommon/configure-env $(RTARCH) $(TOPDIR)
87 :    
88 :    
89 :     #
90 :     # Since our lib files have directories, need to create the target
91 :     # directory if it doesn't yet exist.
92 :     #
93 :     $(libdir)/$(PKGNAME)/%.pm: $(TOPDIR)/$(PKGNAME)/%.pm
94 :     tgt_dir=`dirname $@`; \
95 :     if [ ! -d $$tgt_dir ] ; then \
96 :     mkdir $$tgt_dir; \
97 :     fi
98 :     cp -p $< $@
99 :    
100 : olson 1.2 $(bindir)/%: $(TOPDIR)/$(PKGNAME)/%.pl $(TOOL_HDR)
101 :     ( cat $(TOOL_HDR) $< > $@; chmod +x $@ )
102 :    

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