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Index of /FortyEight

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File Rev. Age Author Last log entry
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rp_rapid_propagation_rasttk.pl  1.5  5 years  olson  Renumber features.
compute_job_signature.pl  1.5  5 years  olson  Add rasttk workflow to signature.
SeedExport.pm  1.17  5 years  olson  RASTtk editable workflow support.
rp_write_exports.pl  1.13  5 years  olson  Add GTO, contigs, and merged genbank export.
check_jobs.pl  1.82  5 years  olson  Allow configuring job floor via $FIG_Config::rast_job_floor
rp_rapid_propagation_classic.pl  1.1  5 years  olson  Add missed files.
rp_rapid_propagation.pl  1.22  5 years  olson  Rollup of RASTtk changes.
Makefile  1.39  5 years  olson  Rollup of RASTtk changes.
Job48.pm  1.44  5 years  olson  bugfix
rastq.pl  1.5  6 years  olson  Commit latest version of code from production RAST.
SGE.pm  1.3  6 years  olson  Commit latest version of code from production RAST.
batch_rast.pl  1.13  6 years  olson  Commit latest version of code from production RAST.
reset-failed-rp.pl  1.7  8 years  olson  fixes to start 3-stage pipeline
JobUpload.pm  1.13  8 years  olson  fix crlf bug
find-orphaned-jobs.pl  1.2  8 years  olson  fixes
rp_compute_sims.pl  1.7  8 years  olson  override fixes
rp_write_spreadsheets.pl  1.1  9 years  olson  Spreadsheet export, new script for dumping queue data.
dump-rast-data.pl  1.1  9 years  olson  Spreadsheet export, new script for dumping queue data.
rp_auto_assign.pl  1.16  9 years  olson  Change default link to point to seed-viewer; add metadata for dynamically pointi...
JobError.pm  1.7  9 years  gdpusch  Fixed error email to correct a typo.
reset_stage.pl  1.2  10 years  gdpusch  Added code to remove 'CANCEL' file.
Mantis.pm  1.5  10 years  olson  Job management fixes.
PipelineUtils.pm  1.3  10 years  olson  more rastq fixes
show_import_list.pl  1.2  10 years  olson  misc updates
send_job_completion_email.pl  1.2  10 years  olson  remove debug
rp_compute_pchs.pl  1.5  10 years  olson  set metadata in_progress
rp_compute_bbhs.pl  1.3  10 years  olson  set metadata in_progress
replicate_job.pl  1.2  10 years  olson  tweaks
pull_sims_from_database.pl  1.2  10 years  olson  support partial sims paths
save_job_signature.pl  1.1  10 years  olson  Add job caching support.
shutdown_rast_servers.pl  1.1  10 years  olson  mods from batch rasting
rp_preprocess_sims.pl  1.3  10 years  olson  mods from batch rasting
boot_rast_servers.pl  1.2  10 years  olson  mods
check_jobs_plasmid.pl  1.7  10 years  gdpusch  Fixed call of wrong script instead of `rp_subsystem_coverage_plasmid`
rp_subsystem_coverage_plasmid.pl  1.1  10 years  arodri7  added subsystem coverage after auto assign
rp_submit_sims.pl  1.2  11 years  olson  add hook to set sge priorities based on metadata value. (ported from check_jobs...
rp_chunk_sims.pl  1.5  11 years  olson  Add support for pulling sims from sims server and submitting only those that don...
pull_sims_from_server.pl  1.1  11 years  olson  Add support for pulling sims from sims server and submitting only those that don...
rp_postproc_sims.pl  1.9  11 years  olson  Add support for pulling sims from sims server and submitting only those that don...
rp_quality_check.pl  1.13  11 years  olson  commit of random stuff from bob dir
rp_make_PFAM_HMM_derived_attributes.pl  1.4  11 years  olson  use mkdir instead of backticks
rp_rapid_propagation_plasmid.pl  1.1  11 years  arodri7  plasmid rast pipeline first version
get_number_of_external_jobs.pl  1.7  11 years  wilke  *** empty log message ***
GeneralJob.pm  1.1  11 years  olson  New file for general-purpose wokr dir mgmt for jobs.
rp_compute_peer_sim_pair.pl  1.1  11 years  olson  First working versoin of the peer sims code.
rp_peer_sim_status.pl  1.2  11 years  olson  First working versoin of the peer sims code.
rp_request_peer_sims.pl  1.2  11 years  olson  First working versoin of the peer sims code.
rp_compute_peer_sims.pl  1.2  11 years  olson  First working versoin of the peer sims code.
rp_make_PSORT_attributes.pl  1.3  11 years  mkubal  handles possible multilocation pegs
JobStage.pm  1.3  12 years  olson  More stage methods.
rp_correction.pl  1.6  12 years  olson  add -meta=metafile to the invoked processing scripts.
rp_make_mw_and_pi_attributes.pl  1.5  12 years  mkubal  SeqStat lib fix
rp_make_genome_phenotype_attributes.pl  1.2  12 years  mkubal  v2
rp_run_blast_against_human.pl  1.2  12 years  mkubal  v2
rp_make_similar_to_human_attributes.pl  1.2  12 years  mkubal  v2
rp_genome_phenotype_attribute_generation.pl  1.1  12 years  mkubal  for new RAST genomes
rp_run_PSORT_on_genome.pl  1.1  12 years  mkubal  for new RAST genomes
rp_PSORT_attribute_generation.pl  1.1  12 years  mkubal  for new RAST genomes
rp_similar_to_human_attribute_generation.pl  1.1  12 years  mkubal  for new RAST genomes
rp_compute_crc64_for_pegs_in_genome.pl  1.2  12 years  mkubal  for new RAST genomes
check_rast_genome.pl  1.2  12 years  wilke  *** empty log message ***
rp_make_interpro_computed_attributes.pl  1.1  12 years  mkubal  new
rp_submit_genome_to_iprscan_on_biocluster.pl  1.1  12 years  mkubal  new
rp_interpro_computed_attribute_generation.pl  1.1  12 years  mkubal  new
rp_make_interpro_download_attributes.pl  1.1  12 years  mkubal  new
crc64.py  1.1  12 years  mkubal  new
rp_interpro_download_attribute_generation.pl  1.1  12 years  mkubal  new
rp_mw_and_pi_attribute_generation.pl  1.1  12 years  mkubal  new
rp_PHOBIUS_search.pl  1.4  12 years  mkubal  new url
rast_v1.cgi  1.1  12 years  olson  Add new stuff to mantis support. Rename the v1 rast frontpage to rast_v1.cgi.
imp_finish_tl_sims.pl  1.6  12 years  olson  lingering fixes for timelogic stuff for the import pipeline.
rp_lustre_finish.pl  1.1  12 years  olson  Support lustre work directory.
Table.pm  1.6  12 years  parrello  Added TITLE command for Wiki.
check_jobs_ross.pl  1.1  12 years  overbeek  this is a hacked check_jobs for the ross RAST
imp_salvage.pl  1.4  12 years  olson  fix bad salvage bug
get_nmpdr_group.pl  1.1  12 years  olson  Determine NMPDR group name for given genome name.
create_import_job.pl  1.5  12 years  olson  Rollup of import changes.
imp_submit_tl_sims.pl  1.2  12 years  olson  Rollup of import changes.
CheckGenome.pm  1.8  12 years  wilke  find is following symlinks now
rp_scenarios.pl  1.7  12 years  mkubal  production RAST version
rp_index_attributes.pl  1.4  12 years  olson  allow a second argument to be passed & ignored
rp_make_PHOBIUS_attributes.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_make_CELLO_attributes.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_CELLO_search.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_glue_contigs.pl  1.5  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_CELLO_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_PFAM_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_PHOBIUS_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_critica.pl  1.4  12 years  olson  set up envirnment for critica perl
rp_glimmer.pl  1.4  12 years  olson  add the FIG bin and external bin dirs to the path so that run_glimmer2 can find ...
imp_build_nr.pl  1.3  12 years  olson  Updates to the Teach stuff. Small mod to build_nr to support condtional setting ...
rp_gen_teach_sims.pl  1.1  12 years  olson  Updates to the Teach stuff. Small mod to build_nr to support condtional setting ...
ClusterStage.pm  1.3  12 years  mkubal  removed high priority form args
imp_check_tl_sim_status.pl  1.2  12 years  olson  Import changes.
validate_tl_sims.pl  1.2  12 years  olson  Import changes.
rp_HMM_PFAM_search_on_timelogic.pl  1.1  12 years  mkubal  v1
TeragridCompute.pm  1.1  12 years  olson  new files
ImportJob.pm  1.1  12 years  olson  new file
imp_prepare_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_process_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_merge_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
import_pipeline.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
FortyEight.pm  1.4  12 years  paarmann  fixed text
rast-title.xcf  1.1  12 years  paarmann  *** empty log message ***
migrate_job.pl  1.2  13 years  olson  add -new option that assigns a new job number to the migrated job.
FortyEight.tmpl  1.3  13 years  paarmann  added js for tooltip
check_ncbi.cgi  1.4  13 years  paarmann  *** empty log message ***
RawOrganismGenomeBrowser.pm  1.2  13 years  paarmann  *** empty log message ***
find-genomes-not-in-seed.pl  1.3  13 years  olson  move email support to Job48 remove stopligth status make quality_check set up co...
copy-raw-genome.pl  1.2  13 years  olson  use FIG_Config for jobs direcotry(backend)

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