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Index of /FortyEight

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File Rev. Age Author Last log entry
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CheckGenome.pm  1.8  11 years  wilke  find is following symlinks now
ClusterStage.pm  1.3  12 years  mkubal  removed high priority form args
FortyEight.pm  1.4  12 years  paarmann  fixed text
FortyEight.tmpl  1.3  12 years  paarmann  added js for tooltip
ImportJob.pm  1.1  12 years  olson  new file
Job48.pm  1.32  11 years  olson  Fix bug in check_jobs Job48 checks $FIG_Config::meta_use_db before createing Gen...
JobError.pm  1.4  11 years  olson  Rework error reporting.
JobStage.pm  1.3  11 years  olson  More stage methods.
Makefile  1.28  11 years  mkubal  v2
Mantis.pm  1.4  11 years  olson  Add links into the page dumper in the notes.
RawOrganismGenomeBrowser.pm  1.2  12 years  paarmann  *** empty log message ***
SGE.pm  1.1  12 years  olson  new files
SeedExport.pm  1.11  11 years  olson  Fix exports.
Table.pm  1.6  11 years  parrello  Added TITLE command for Wiki.
TeragridCompute.pm  1.1  12 years  olson  new files
check_jobs.pl  1.55  11 years  olson  Fix bug in check_jobs Job48 checks $FIG_Config::meta_use_db before createing Gen...
check_jobs_ross.pl  1.1  11 years  overbeek  this is a hacked check_jobs for the ross RAST
check_ncbi.cgi  1.4  12 years  paarmann  *** empty log message ***
check_rast_genome.pl  1.2  11 years  wilke  *** empty log message ***
copy-raw-genome.pl  1.2  12 years  olson  use FIG_Config for jobs direcotry(backend)
crc64.py  1.1  11 years  mkubal  new
create_import_job.pl  1.5  11 years  olson  Rollup of import changes.
find-genomes-not-in-seed.pl  1.3  12 years  olson  move email support to Job48 remove stopligth status make quality_check set up co...
get_nmpdr_group.pl  1.1  11 years  olson  Determine NMPDR group name for given genome name.
get_number_of_external_jobs.pl  1.6  11 years  wilke  *** empty log message ***
imp_build_nr.pl  1.3  12 years  olson  Updates to the Teach stuff. Small mod to build_nr to support condtional setting ...
imp_check_tl_sim_status.pl  1.2  12 years  olson  Import changes.
imp_finish_tl_sims.pl  1.6  11 years  olson  lingering fixes for timelogic stuff for the import pipeline.
imp_merge_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_prepare_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_process_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_salvage.pl  1.4  11 years  olson  fix bad salvage bug
imp_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_submit_tl_sims.pl  1.2  11 years  olson  Rollup of import changes.
import_pipeline.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
migrate_job.pl  1.2  12 years  olson  add -new option that assigns a new job number to the migrated job.
rast-title.xcf  1.1  12 years  paarmann  *** empty log message ***
rast_v1.cgi  1.1  11 years  olson  Add new stuff to mantis support. Rename the v1 rast frontpage to rast_v1.cgi.
reset-failed-rp.pl  1.1  11 years  olson  Add reset-failed-rp which will fix a job which RP broke for.
reset_stage.pl  1.1  12 years  olson  Add reset_stage.
rp_CELLO_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_CELLO_search.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_HMM_PFAM_search_on_timelogic.pl  1.1  12 years  mkubal  v1
rp_PFAM_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_PHOBIUS_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_PHOBIUS_search.pl  1.4  11 years  mkubal  new url
rp_PSORT_attribute_generation.pl  1.1  11 years  mkubal  for new RAST genomes
rp_auto_assign.pl  1.6  11 years  olson  Use -orgdir option to auto_assign in order to use indexed sims.
rp_chunk_sims.pl  1.3  12 years  olson  Rollup of RAST->SEED import stuff.
rp_compute_bbhs.pl  1.2  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_compute_crc64_for_pegs_in_genome.pl  1.2  11 years  mkubal  for new RAST genomes
rp_compute_pchs.pl  1.4  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_compute_sims.pl  1.2  12 years  olson  updates to 48 code
rp_correction.pl  1.6  11 years  olson  add -meta=metafile to the invoked processing scripts.
rp_critica.pl  1.4  12 years  olson  set up envirnment for critica perl
rp_gen_teach_sims.pl  1.1  12 years  olson  Updates to the Teach stuff. Small mod to build_nr to support condtional setting ...
rp_genome_phenotype_attribute_generation.pl  1.1  11 years  mkubal  for new RAST genomes
rp_glimmer.pl  1.4  12 years  olson  add the FIG bin and external bin dirs to the path so that run_glimmer2 can find ...
rp_glue_contigs.pl  1.5  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_index_attributes.pl  1.4  12 years  olson  allow a second argument to be passed & ignored
rp_interpro_computed_attribute_generation.pl  1.1  11 years  mkubal  new
rp_interpro_download_attribute_generation.pl  1.1  11 years  mkubal  new
rp_lustre_finish.pl  1.1  11 years  olson  Support lustre work directory.
rp_make_CELLO_attributes.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_make_PFAM_HMM_derived_attributes.pl  1.3  12 years  mkubal  writes to rp/genome/attributes dir
rp_make_PHOBIUS_attributes.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_make_PSORT_attributes.pl  1.3  11 years  mkubal  handles possible multilocation pegs
rp_make_genome_phenotype_attributes.pl  1.2  11 years  mkubal  v2
rp_make_interpro_computed_attributes.pl  1.1  11 years  mkubal  new
rp_make_interpro_download_attributes.pl  1.1  11 years  mkubal  new
rp_make_mw_and_pi_attributes.pl  1.5  11 years  mkubal  SeqStat lib fix
rp_make_similar_to_human_attributes.pl  1.2  11 years  mkubal  v2
rp_mw_and_pi_attribute_generation.pl  1.1  11 years  mkubal  new
rp_postproc_sims.pl  1.7  11 years  olson  Use FIG::find_fig_executable() to determine the proper path for index_sims_File....
rp_quality_check.pl  1.12  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_rapid_propagation.pl  1.9  11 years  olson  fix typo
rp_run_PSORT_on_genome.pl  1.1  11 years  mkubal  for new RAST genomes
rp_run_blast_against_human.pl  1.2  11 years  mkubal  v2
rp_scenarios.pl  1.7  12 years  mkubal  production RAST version
rp_similar_to_human_attribute_generation.pl  1.1  11 years  mkubal  for new RAST genomes
rp_submit_genome_to_iprscan_on_biocluster.pl  1.1  11 years  mkubal  new
rp_write_exports.pl  1.3  11 years  olson  Create contig btrees if not already there; this HUGEly accelerates download crea...
validate_tl_sims.pl  1.2  12 years  olson  Import changes.

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