 Parent Directory
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.AppleDouble/
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WebApp/
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WebApplicationServer/
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WebPage/
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rast-title.xcf
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1.1 |
12 years |
paarmann |
*** empty log message ***
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check_ncbi.cgi
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1.4 |
12 years |
paarmann |
*** empty log message ***
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get_number_of_external_jobs.pl
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1.7 |
10 years |
wilke |
*** empty log message ***
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RawOrganismGenomeBrowser.pm
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1.2 |
12 years |
paarmann |
*** empty log message ***
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check_rast_genome.pl
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1.2 |
11 years |
wilke |
*** empty log message ***
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compute_job_signature.pl
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1.3 |
8 years |
olson |
Add an explicit 'corrections.disabled' key for those cases where we
don't want a... |
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save_job_signature.pl
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1.1 |
9 years |
olson |
Add job caching support.
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rp_rapid_propagation.pl
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1.21 |
8 years |
olson |
Add kmerDataset selection support.
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rast_v1.cgi
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1.1 |
11 years |
olson |
Add new stuff to mantis support.
Rename the v1 rast frontpage to rast_v1.cgi.
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rp_chunk_sims.pl
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1.5 |
10 years |
olson |
Add support for pulling sims from sims server and submitting only those that don... |
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pull_sims_from_server.pl
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1.1 |
10 years |
olson |
Add support for pulling sims from sims server and submitting only those that don... |
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rp_postproc_sims.pl
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1.9 |
10 years |
olson |
Add support for pulling sims from sims server and submitting only those that don... |
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Table.pm
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1.6 |
11 years |
parrello |
Added TITLE command for Wiki.
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reset_stage.pl
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1.2 |
9 years |
gdpusch |
Added code to remove 'CANCEL' file.
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rp_auto_assign.pl
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1.16 |
8 years |
olson |
Change default link to point to seed-viewer; add metadata for
dynamically pointi... |
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get_nmpdr_group.pl
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1.1 |
12 years |
olson |
Determine NMPDR group name for given genome name.
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rp_glue_contigs.pl
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1.5 |
12 years |
olson |
Don't submit non-TL jobs to the TL queue.
Index attributes after new attributes... |
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rp_CELLO_attribute_generation.pl
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1.2 |
12 years |
olson |
Don't submit non-TL jobs to the TL queue.
Index attributes after new attributes... |
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rp_PFAM_attribute_generation.pl
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1.2 |
12 years |
olson |
Don't submit non-TL jobs to the TL queue.
Index attributes after new attributes... |
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rp_PHOBIUS_attribute_generation.pl
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1.2 |
12 years |
olson |
Don't submit non-TL jobs to the TL queue.
Index attributes after new attributes... |
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rp_compute_peer_sim_pair.pl
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1.1 |
11 years |
olson |
First working versoin of the peer sims code.
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rp_peer_sim_status.pl
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1.2 |
11 years |
olson |
First working versoin of the peer sims code.
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rp_request_peer_sims.pl
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1.2 |
11 years |
olson |
First working versoin of the peer sims code.
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rp_compute_peer_sims.pl
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1.2 |
11 years |
olson |
First working versoin of the peer sims code.
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check_jobs_plasmid.pl
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1.7 |
10 years |
gdpusch |
Fixed call of wrong script instead of `rp_subsystem_coverage_plasmid`
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JobError.pm
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1.7 |
9 years |
gdpusch |
Fixed error email to correct a typo.
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imp_check_tl_sim_status.pl
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1.2 |
12 years |
olson |
Import changes.
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validate_tl_sims.pl
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1.2 |
12 years |
olson |
Import changes.
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SGE.pm
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1.2 |
11 years |
olson |
Inline intialization of SGE environment
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Mantis.pm
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1.5 |
9 years |
olson |
Job management fixes.
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JobUpload.pm
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1.12 |
8 years |
olson |
Limit contig ids to 70 chars on upload.
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JobStage.pm
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1.3 |
11 years |
olson |
More stage methods.
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GeneralJob.pm
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1.1 |
11 years |
olson |
New file for general-purpose wokr dir mgmt for jobs.
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Job48.pm
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1.42 |
9 years |
olson |
Push the GENOME/TAXONOMY/PROJECT files down into the raw genome directory so the... |
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reset-failed-rp.pl
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1.6 |
8 years |
gdpusch |
Reset RP, and also any subsequent stages.
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imp_prepare_sims.pl
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1.1 |
12 years |
olson |
Rollup of RAST->SEED import stuff.
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imp_sims.pl
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1.1 |
12 years |
olson |
Rollup of RAST->SEED import stuff.
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imp_process_sims.pl
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1.1 |
12 years |
olson |
Rollup of RAST->SEED import stuff.
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imp_merge_sims.pl
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1.1 |
12 years |
olson |
Rollup of RAST->SEED import stuff.
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import_pipeline.pl
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1.1 |
12 years |
olson |
Rollup of RAST->SEED import stuff.
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create_import_job.pl
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1.5 |
12 years |
olson |
Rollup of import changes.
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imp_submit_tl_sims.pl
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1.2 |
12 years |
olson |
Rollup of import changes.
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batch_rast.pl
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1.12 |
8 years |
olson |
Safety mods.
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rp_make_mw_and_pi_attributes.pl
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1.5 |
11 years |
mkubal |
SeqStat lib fix
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rp_write_spreadsheets.pl
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1.1 |
8 years |
olson |
Spreadsheet export, new script for dumping queue data.
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Makefile
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1.38 |
8 years |
olson |
Spreadsheet export, new script for dumping queue data.
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dump-rast-data.pl
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1.1 |
8 years |
olson |
Spreadsheet export, new script for dumping queue data.
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rp_write_exports.pl
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1.11 |
8 years |
olson |
Spreadsheet export, new script for dumping queue data.
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rp_lustre_finish.pl
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1.1 |
11 years |
olson |
Support lustre work directory.
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imp_build_nr.pl
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1.3 |
12 years |
olson |
Updates to the Teach stuff. Small mod to build_nr to support condtional setting ... |
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rp_gen_teach_sims.pl
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1.1 |
12 years |
olson |
Updates to the Teach stuff. Small mod to build_nr to support condtional setting ... |
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rp_correction.pl
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1.6 |
11 years |
olson |
add -meta=metafile to the invoked processing scripts.
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migrate_job.pl
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1.2 |
12 years |
olson |
add -new option that assigns a new job number to the migrated job.
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rp_submit_sims.pl
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1.2 |
10 years |
olson |
add hook to set sge priorities based on metadata value.
(ported from check_jobs... |
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rp_glimmer.pl
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1.4 |
12 years |
olson |
add the FIG bin and external bin dirs to the path so that run_glimmer2 can find ... |
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FortyEight.tmpl
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1.3 |
12 years |
paarmann |
added js for tooltip
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rp_subsystem_coverage_plasmid.pl
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1.1 |
10 years |
arodri7 |
added subsystem coverage after auto assign
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rp_index_attributes.pl
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1.4 |
12 years |
olson |
allow a second argument to be passed & ignored
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rp_quality_check.pl
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1.13 |
10 years |
olson |
commit of random stuff from bob dir
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CheckGenome.pm
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1.8 |
12 years |
wilke |
find is following symlinks now
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imp_salvage.pl
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1.4 |
12 years |
olson |
fix bad salvage bug
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SeedExport.pm
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1.13 |
9 years |
olson |
fix case bug
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FortyEight.pm
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1.4 |
12 years |
paarmann |
fixed text
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find-orphaned-jobs.pl
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1.2 |
8 years |
olson |
fixes
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rp_run_PSORT_on_genome.pl
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1.1 |
11 years |
mkubal |
for new RAST genomes
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rp_genome_phenotype_attribute_generation.pl
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1.1 |
11 years |
mkubal |
for new RAST genomes
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rp_similar_to_human_attribute_generation.pl
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1.1 |
11 years |
mkubal |
for new RAST genomes
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rp_compute_crc64_for_pegs_in_genome.pl
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1.2 |
11 years |
mkubal |
for new RAST genomes
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rp_PSORT_attribute_generation.pl
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1.1 |
11 years |
mkubal |
for new RAST genomes
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check_jobs.pl
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1.80 |
8 years |
olson |
force to compute.q
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rp_make_PSORT_attributes.pl
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1.3 |
11 years |
mkubal |
handles possible multilocation pegs
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imp_finish_tl_sims.pl
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1.6 |
11 years |
olson |
lingering fixes for timelogic stuff for the import pipeline.
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show_import_list.pl
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1.2 |
9 years |
olson |
misc updates
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boot_rast_servers.pl
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1.2 |
9 years |
olson |
mods
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shutdown_rast_servers.pl
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1.1 |
9 years |
olson |
mods from batch rasting
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rp_preprocess_sims.pl
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1.3 |
9 years |
olson |
mods from batch rasting
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rastq.pl
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1.4 |
9 years |
olson |
more rastq fixes
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PipelineUtils.pm
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1.3 |
9 years |
olson |
more rastq fixes
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find-genomes-not-in-seed.pl
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1.3 |
12 years |
olson |
move email support to Job48
remove stopligth status
make quality_check set up co... |
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rp_make_interpro_computed_attributes.pl
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1.1 |
11 years |
mkubal |
new
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rp_submit_genome_to_iprscan_on_biocluster.pl
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1.1 |
11 years |
mkubal |
new
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crc64.py
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1.1 |
11 years |
mkubal |
new
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rp_interpro_computed_attribute_generation.pl
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1.1 |
11 years |
mkubal |
new
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rp_mw_and_pi_attribute_generation.pl
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1.1 |
11 years |
mkubal |
new
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rp_make_interpro_download_attributes.pl
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1.1 |
11 years |
mkubal |
new
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rp_interpro_download_attribute_generation.pl
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1.1 |
11 years |
mkubal |
new
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ImportJob.pm
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1.1 |
12 years |
olson |
new file
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TeragridCompute.pm
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1.1 |
12 years |
olson |
new files
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rp_PHOBIUS_search.pl
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1.4 |
11 years |
mkubal |
new url
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rp_compute_sims.pl
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1.7 |
8 years |
olson |
override fixes
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rp_rapid_propagation_plasmid.pl
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1.1 |
10 years |
arodri7 |
plasmid rast pipeline first version
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rp_scenarios.pl
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1.7 |
12 years |
mkubal |
production RAST version
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send_job_completion_email.pl
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1.2 |
9 years |
olson |
remove debug
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ClusterStage.pm
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1.3 |
12 years |
mkubal |
removed high priority form args
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rp_compute_pchs.pl
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1.5 |
9 years |
olson |
set metadata in_progress
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rp_compute_bbhs.pl
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1.3 |
9 years |
olson |
set metadata in_progress
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rp_critica.pl
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1.4 |
12 years |
olson |
set up envirnment for critica perl
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pull_sims_from_database.pl
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1.2 |
9 years |
olson |
support partial sims paths
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check_jobs_ross.pl
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1.1 |
11 years |
overbeek |
this is a hacked check_jobs for the ross RAST
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replicate_job.pl
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1.2 |
9 years |
olson |
tweaks
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copy-raw-genome.pl
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1.2 |
12 years |
olson |
use FIG_Config for jobs direcotry(backend)
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rp_make_PFAM_HMM_derived_attributes.pl
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1.4 |
10 years |
olson |
use mkdir instead of backticks
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rp_HMM_PFAM_search_on_timelogic.pl
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1.1 |
12 years |
mkubal |
v1
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rp_make_similar_to_human_attributes.pl
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1.2 |
11 years |
mkubal |
v2
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rp_run_blast_against_human.pl
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1.2 |
11 years |
mkubal |
v2
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rp_make_genome_phenotype_attributes.pl
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1.2 |
11 years |
mkubal |
v2
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rp_make_PHOBIUS_attributes.pl
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1.3 |
12 years |
mkubal |
writes/reads to /rp/genome
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rp_CELLO_search.pl
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1.3 |
12 years |
mkubal |
writes/reads to /rp/genome
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rp_make_CELLO_attributes.pl
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1.3 |
12 years |
mkubal |
writes/reads to /rp/genome
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cluster.cgi
(dead)
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No revisions exist on mgrast_release_3_1_2
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index48.cgi
(dead)
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No revisions exist on mgrast_release_3_1_2
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job-status.cgi
(dead)
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No revisions exist on mgrast_release_3_1_2
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rast.cgi
(dead)
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No revisions exist on mgrast_release_3_1_2
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rp_rapid_propagation_classic.pl
(dead)
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No revisions exist on mgrast_release_3_1_2
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rp_rapid_propagation_rasttk.pl
(dead)
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No revisions exist on mgrast_release_3_1_2
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standalone-sims.pl
(dead)
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No revisions exist on mgrast_release_3_1_2
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user-upload-report.pl
(dead)
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No revisions exist on mgrast_release_3_1_2
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