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Index of /FortyEight

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File Rev. Age Author Last log entry
 Parent Directory        
.AppleDouble/        
WebApp/        
WebApplicationServer/        
WebPage/        
rp_make_similar_to_human_attributes.pl  1.2  11 years  mkubal  v2
rp_run_blast_against_human.pl  1.2  11 years  mkubal  v2
rp_make_PHOBIUS_attributes.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_run_PSORT_on_genome.pl  1.1  11 years  mkubal  for new RAST genomes
rp_make_interpro_computed_attributes.pl  1.1  12 years  mkubal  new
rp_CELLO_search.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_genome_phenotype_attribute_generation.pl  1.1  11 years  mkubal  for new RAST genomes
rp_PHOBIUS_search.pl  1.4  12 years  mkubal  new url
ClusterStage.pm  1.3  12 years  mkubal  removed high priority form args
rp_submit_genome_to_iprscan_on_biocluster.pl  1.1  12 years  mkubal  new
rp_make_genome_phenotype_attributes.pl  1.2  11 years  mkubal  v2
rp_make_PSORT_attributes.pl  1.2  11 years  mkubal  v2
crc64.py  1.1  12 years  mkubal  new
rp_similar_to_human_attribute_generation.pl  1.1  11 years  mkubal  for new RAST genomes
Makefile  1.28  11 years  mkubal  v2
rp_make_CELLO_attributes.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_interpro_computed_attribute_generation.pl  1.1  12 years  mkubal  new
rp_mw_and_pi_attribute_generation.pl  1.1  12 years  mkubal  new
rp_compute_crc64_for_pegs_in_genome.pl  1.2  11 years  mkubal  for new RAST genomes
rp_make_mw_and_pi_attributes.pl  1.5  11 years  mkubal  SeqStat lib fix
rp_make_interpro_download_attributes.pl  1.1  12 years  mkubal  new
rp_interpro_download_attribute_generation.pl  1.1  12 years  mkubal  new
rp_make_PFAM_HMM_derived_attributes.pl  1.3  12 years  mkubal  writes to rp/genome/attributes dir
rp_PSORT_attribute_generation.pl  1.1  11 years  mkubal  for new RAST genomes
rp_HMM_PFAM_search_on_timelogic.pl  1.1  12 years  mkubal  v1
rp_scenarios.pl  1.7  12 years  mkubal  production RAST version
imp_check_tl_sim_status.pl  1.2  12 years  olson  Import changes.
SeedExport.pm  1.11  12 years  olson  Fix exports.
Mantis.pm  1.4  12 years  olson  Add links into the page dumper in the notes.
create_import_job.pl  1.5  12 years  olson  Rollup of import changes.
rp_quality_check.pl  1.12  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_rapid_propagation.pl  1.9  11 years  olson  fix typo
rp_glue_contigs.pl  1.5  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_compute_pchs.pl  1.4  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
ImportJob.pm  1.1  12 years  olson  new file
check_jobs.pl  1.41  12 years  olson  more userobj method name workarounds
rp_compute_bbhs.pl  1.2  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
imp_prepare_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
rp_index_attributes.pl  1.4  12 years  olson  allow a second argument to be passed & ignored
imp_build_nr.pl  1.3  12 years  olson  Updates to the Teach stuff. Small mod to build_nr to support condtional setting ...
rp_CELLO_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_compute_sims.pl  1.2  13 years  olson  updates to 48 code
reset-failed-rp.pl  1.1  11 years  olson  Add reset-failed-rp which will fix a job which RP broke for.
rp_correction.pl  1.6  11 years  olson  add -meta=metafile to the invoked processing scripts.
rast_v1.cgi  1.1  12 years  olson  Add new stuff to mantis support. Rename the v1 rast frontpage to rast_v1.cgi.
reset_stage.pl  1.1  12 years  olson  Add reset_stage.
migrate_job.pl  1.2  12 years  olson  add -new option that assigns a new job number to the migrated job.
rp_lustre_finish.pl  1.1  12 years  olson  Support lustre work directory.
rp_chunk_sims.pl  1.3  12 years  olson  Rollup of RAST->SEED import stuff.
SGE.pm  1.1  12 years  olson  new files
imp_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
copy-raw-genome.pl  1.2  13 years  olson  use FIG_Config for jobs direcotry(backend)
rp_critica.pl  1.4  12 years  olson  set up envirnment for critica perl
rp_glimmer.pl  1.4  12 years  olson  add the FIG bin and external bin dirs to the path so that run_glimmer2 can find ...
rp_postproc_sims.pl  1.7  11 years  olson  Use FIG::find_fig_executable() to determine the proper path for index_sims_File....
imp_finish_tl_sims.pl  1.6  12 years  olson  lingering fixes for timelogic stuff for the import pipeline.
JobError.pm  1.4  12 years  olson  Rework error reporting.
rp_PFAM_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_PHOBIUS_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_gen_teach_sims.pl  1.1  12 years  olson  Updates to the Teach stuff. Small mod to build_nr to support condtional setting ...
validate_tl_sims.pl  1.2  12 years  olson  Import changes.
JobStage.pm  1.2  12 years  olson  add openfile method
imp_process_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_submit_tl_sims.pl  1.2  12 years  olson  Rollup of import changes.
rp_auto_assign.pl  1.5  12 years  olson  fix compile errors
get_nmpdr_group.pl  1.1  12 years  olson  Determine NMPDR group name for given genome name.
find-genomes-not-in-seed.pl  1.3  13 years  olson  move email support to Job48 remove stopligth status make quality_check set up co...
imp_salvage.pl  1.4  12 years  olson  fix bad salvage bug
TeragridCompute.pm  1.1  12 years  olson  new files
rp_write_exports.pl  1.3  12 years  olson  Create contig btrees if not already there; this HUGEly accelerates download crea...
imp_merge_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
import_pipeline.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
check_jobs_ross.pl  1.1  12 years  overbeek  this is a hacked check_jobs for the ross RAST
rast-title.xcf  1.1  12 years  paarmann  *** empty log message ***
check_ncbi.cgi  1.4  12 years  paarmann  *** empty log message ***
RawOrganismGenomeBrowser.pm  1.2  12 years  paarmann  *** empty log message ***
FortyEight.pm  1.4  12 years  paarmann  fixed text
FortyEight.tmpl  1.3  12 years  paarmann  added js for tooltip
Table.pm  1.6  12 years  parrello  Added TITLE command for Wiki.
Job48.pm  1.30  11 years  redwards  correcting the order that the web app is called to stop an annoying error messag...
get_number_of_external_jobs.pl  1.6  12 years  wilke  *** empty log message ***
CheckGenome.pm  1.8  12 years  wilke  find is following symlinks now
check_rast_genome.pl  1.2  12 years  wilke  *** empty log message ***
GeneralJob.pm (dead) No revisions exist on rast_rel_2008_06_18
JobUpload.pm (dead) No revisions exist on rast_rel_2008_06_18
PipelineUtils.pm (dead) No revisions exist on rast_rel_2008_06_18
batch_rast.pl (dead) No revisions exist on rast_rel_2008_06_18
boot_rast_servers.pl (dead) No revisions exist on rast_rel_2008_06_18
check_jobs_plasmid.pl (dead) No revisions exist on rast_rel_2008_06_18
cluster.cgi (dead) No revisions exist on rast_rel_2008_06_18
compute_job_signature.pl (dead) No revisions exist on rast_rel_2008_06_18
dump-rast-data.pl (dead) No revisions exist on rast_rel_2008_06_18
find-orphaned-jobs.pl (dead) No revisions exist on rast_rel_2008_06_18
index48.cgi (dead) No revisions exist on rast_rel_2008_06_18
job-status.cgi (dead) No revisions exist on rast_rel_2008_06_18
pull_sims_from_database.pl (dead) No revisions exist on rast_rel_2008_06_18
pull_sims_from_server.pl (dead) No revisions exist on rast_rel_2008_06_18
rast.cgi (dead) No revisions exist on rast_rel_2008_06_18
rastq.pl (dead) No revisions exist on rast_rel_2008_06_18
replicate_job.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_compute_peer_sim_pair.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_compute_peer_sims.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_peer_sim_status.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_preprocess_sims.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_rapid_propagation_classic.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_rapid_propagation_patric.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_rapid_propagation_plasmid.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_rapid_propagation_rasttk.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_request_peer_sims.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_submit_sims.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_subsystem_coverage_plasmid.pl (dead) No revisions exist on rast_rel_2008_06_18
rp_write_spreadsheets.pl (dead) No revisions exist on rast_rel_2008_06_18
save_job_signature.pl (dead) No revisions exist on rast_rel_2008_06_18
send_job_completion_email.pl (dead) No revisions exist on rast_rel_2008_06_18
show_import_list.pl (dead) No revisions exist on rast_rel_2008_06_18
shutdown_rast_servers.pl (dead) No revisions exist on rast_rel_2008_06_18
standalone-sims.pl (dead) No revisions exist on rast_rel_2008_06_18
user-upload-report.pl (dead) No revisions exist on rast_rel_2008_06_18

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