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Index of /FortyEight

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File Rev. Age Author Last log entry
 Parent Directory        
.AppleDouble/        
WebApp/        
WebApplicationServer/        
WebPage/        
CheckGenome.pm  1.8  12 years  wilke  find is following symlinks now
ClusterStage.pm  1.3  12 years  mkubal  removed high priority form args
FortyEight.pm  1.4  12 years  paarmann  fixed text
FortyEight.tmpl  1.3  13 years  paarmann  added js for tooltip
ImportJob.pm  1.1  12 years  olson  new file
Job48.pm  1.29  12 years  olson  account for spurious changes in PPO API.
JobError.pm  1.4  12 years  olson  Rework error reporting.
JobStage.pm  1.2  12 years  olson  add openfile method
Makefile  1.27  12 years  olson  Add reset-failed-rp which will fix a job which RP broke for.
Mantis.pm  1.4  12 years  olson  Add links into the page dumper in the notes.
RawOrganismGenomeBrowser.pm  1.2  13 years  paarmann  *** empty log message ***
SGE.pm  1.1  12 years  olson  new files
SeedExport.pm  1.11  12 years  olson  Fix exports.
Table.pm  1.6  12 years  parrello  Added TITLE command for Wiki.
TeragridCompute.pm  1.1  12 years  olson  new files
check_jobs.pl  1.41  12 years  olson  more userobj method name workarounds
check_jobs_ross.pl  1.1  12 years  overbeek  this is a hacked check_jobs for the ross RAST
check_ncbi.cgi  1.4  13 years  paarmann  *** empty log message ***
check_rast_genome.pl  1.2  12 years  wilke  *** empty log message ***
copy-raw-genome.pl  1.2  13 years  olson  use FIG_Config for jobs direcotry(backend)
crc64.py  1.1  12 years  mkubal  new
create_import_job.pl  1.5  12 years  olson  Rollup of import changes.
find-genomes-not-in-seed.pl  1.3  13 years  olson  move email support to Job48 remove stopligth status make quality_check set up co...
get_nmpdr_group.pl  1.1  12 years  olson  Determine NMPDR group name for given genome name.
get_number_of_external_jobs.pl  1.6  12 years  wilke  *** empty log message ***
imp_build_nr.pl  1.3  12 years  olson  Updates to the Teach stuff. Small mod to build_nr to support condtional setting ...
imp_check_tl_sim_status.pl  1.2  12 years  olson  Import changes.
imp_finish_tl_sims.pl  1.6  12 years  olson  lingering fixes for timelogic stuff for the import pipeline.
imp_merge_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_prepare_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_process_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_salvage.pl  1.4  12 years  olson  fix bad salvage bug
imp_sims.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
imp_submit_tl_sims.pl  1.2  12 years  olson  Rollup of import changes.
import_pipeline.pl  1.1  12 years  olson  Rollup of RAST->SEED import stuff.
migrate_job.pl  1.2  13 years  olson  add -new option that assigns a new job number to the migrated job.
rast-title.xcf  1.1  12 years  paarmann  *** empty log message ***
rast_v1.cgi  1.1  12 years  olson  Add new stuff to mantis support. Rename the v1 rast frontpage to rast_v1.cgi.
reset-failed-rp.pl  1.1  12 years  olson  Add reset-failed-rp which will fix a job which RP broke for.
reset_stage.pl  1.1  12 years  olson  Add reset_stage.
rp_CELLO_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_CELLO_search.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_HMM_PFAM_search_on_timelogic.pl  1.1  12 years  mkubal  v1
rp_PFAM_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_PHOBIUS_attribute_generation.pl  1.2  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_PHOBIUS_search.pl  1.4  12 years  mkubal  new url
rp_auto_assign.pl  1.5  12 years  olson  fix compile errors
rp_chunk_sims.pl  1.3  12 years  olson  Rollup of RAST->SEED import stuff.
rp_compute_bbhs.pl  1.2  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_compute_crc64_for_pegs_in_genome.pl  1.1  12 years  mkubal  new
rp_compute_pchs.pl  1.4  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_compute_sims.pl  1.2  13 years  olson  updates to 48 code
rp_correction.pl  1.5  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_critica.pl  1.4  12 years  olson  set up envirnment for critica perl
rp_gen_teach_sims.pl  1.1  12 years  olson  Updates to the Teach stuff. Small mod to build_nr to support condtional setting ...
rp_glimmer.pl  1.4  12 years  olson  add the FIG bin and external bin dirs to the path so that run_glimmer2 can find ...
rp_glue_contigs.pl  1.5  12 years  olson  Don't submit non-TL jobs to the TL queue. Index attributes after new attributes...
rp_index_attributes.pl  1.4  12 years  olson  allow a second argument to be passed & ignored
rp_interpro_computed_attribute_generation.pl  1.1  12 years  mkubal  new
rp_interpro_download_attribute_generation.pl  1.1  12 years  mkubal  new
rp_lustre_finish.pl  1.1  12 years  olson  Support lustre work directory.
rp_make_CELLO_attributes.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_make_PFAM_HMM_derived_attributes.pl  1.3  12 years  mkubal  writes to rp/genome/attributes dir
rp_make_PHOBIUS_attributes.pl  1.3  12 years  mkubal  writes/reads to /rp/genome
rp_make_interpro_computed_attributes.pl  1.1  12 years  mkubal  new
rp_make_interpro_download_attributes.pl  1.1  12 years  mkubal  new
rp_make_mw_and_pi_attributes.pl  1.1  12 years  mkubal  new
rp_mw_and_pi_attribute_generation.pl  1.1  12 years  mkubal  new
rp_postproc_sims.pl  1.6  12 years  olson  fix bad sims expansion bug.
rp_quality_check.pl  1.12  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_rapid_propagation.pl  1.7  12 years  olson  Disable contig splitting, quality check, and correction when keep_genecalls is e...
rp_scenarios.pl  1.7  12 years  mkubal  production RAST version
rp_submit_genome_to_iprscan_on_biocluster.pl  1.1  12 years  mkubal  new
rp_write_exports.pl  1.3  12 years  olson  Create contig btrees if not already there; this HUGEly accelerates download crea...
validate_tl_sims.pl  1.2  12 years  olson  Import changes.
GeneralJob.pm (dead) No revisions exist on rast_rel_2008_04_23
JobUpload.pm (dead) No revisions exist on rast_rel_2008_04_23
PipelineUtils.pm (dead) No revisions exist on rast_rel_2008_04_23
batch_rast.pl (dead) No revisions exist on rast_rel_2008_04_23
boot_rast_servers.pl (dead) No revisions exist on rast_rel_2008_04_23
check_jobs_plasmid.pl (dead) No revisions exist on rast_rel_2008_04_23
cluster.cgi (dead) No revisions exist on rast_rel_2008_04_23
compute_job_signature.pl (dead) No revisions exist on rast_rel_2008_04_23
dump-rast-data.pl (dead) No revisions exist on rast_rel_2008_04_23
find-orphaned-jobs.pl (dead) No revisions exist on rast_rel_2008_04_23
index48.cgi (dead) No revisions exist on rast_rel_2008_04_23
job-status.cgi (dead) No revisions exist on rast_rel_2008_04_23
pull_sims_from_database.pl (dead) No revisions exist on rast_rel_2008_04_23
pull_sims_from_server.pl (dead) No revisions exist on rast_rel_2008_04_23
rast.cgi (dead) No revisions exist on rast_rel_2008_04_23
rastq.pl (dead) No revisions exist on rast_rel_2008_04_23
replicate_job.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_PSORT_attribute_generation.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_compute_peer_sim_pair.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_compute_peer_sims.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_genome_phenotype_attribute_generation.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_make_PSORT_attributes.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_make_genome_phenotype_attributes.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_make_similar_to_human_attributes.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_peer_sim_status.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_preprocess_sims.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_rapid_propagation_classic.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_rapid_propagation_patric.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_rapid_propagation_plasmid.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_rapid_propagation_rasttk.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_request_peer_sims.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_run_PSORT_on_genome.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_run_blast_against_human.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_similar_to_human_attribute_generation.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_submit_sims.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_subsystem_coverage_plasmid.pl (dead) No revisions exist on rast_rel_2008_04_23
rp_write_spreadsheets.pl (dead) No revisions exist on rast_rel_2008_04_23
save_job_signature.pl (dead) No revisions exist on rast_rel_2008_04_23
send_job_completion_email.pl (dead) No revisions exist on rast_rel_2008_04_23
show_import_list.pl (dead) No revisions exist on rast_rel_2008_04_23
shutdown_rast_servers.pl (dead) No revisions exist on rast_rel_2008_04_23
standalone-sims.pl (dead) No revisions exist on rast_rel_2008_04_23
user-upload-report.pl (dead) No revisions exist on rast_rel_2008_04_23

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