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Revision 1.50 - (view) (download) (annotate) - [select for diffs]
Mon Dec 5 19:12:12 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: HEAD, caBIG-05Apr06-00, caBIG-13Feb06-00, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.49: +17 -0 lines
Diff to previous 1.49
add license words

Revision 1.49 - (view) (download) (annotate) - [select for diffs]
Sun Jan 23 23:53:16 2005 UTC (14 years, 10 months ago) by golsen
Branch: MAIN
CVS Tags: Root-bobdev_news, caBIG-00-00-00, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.48: +48 -67 lines
Diff to previous 1.48
More adding order options to Pick Organisms to Extend list

Revision 1.48 - (view) (download) (annotate) - [select for diffs]
Sun Jan 23 19:48:56 2005 UTC (14 years, 10 months ago) by golsen
Branch: MAIN
Changes since 1.47: +61 -14 lines
Diff to previous 1.47
Add order options to Pick Organisms to Extend list

Revision 1.47 - (view) (download) (annotate) - [select for diffs]
Fri Dec 17 22:39:46 2004 UTC (14 years, 11 months ago) by mkubal
Branch: MAIN
Changes since 1.46: +27 -7 lines
Diff to previous 1.46
be able to see other ss for roles

Revision 1.46 - (view) (download) (annotate) - [select for diffs]
Wed Dec 1 19:10:08 2004 UTC (14 years, 11 months ago) by mkubal
Branch: MAIN
Changes since 1.45: +7 -5 lines
Diff to previous 1.45
ssa2.cgi with auto-extend for cyanos and NMPDR

Revision 1.45 - (view) (download) (annotate) - [select for diffs]
Sat Nov 13 03:45:44 2004 UTC (15 years ago) by mkubal
Branch: MAIN
Changes since 1.44: +10 -9 lines
Diff to previous 1.44
revised path and NMPDR extend

Revision 1.44 - (view) (download) (annotate) - [select for diffs]
Sat Nov 13 02:57:24 2004 UTC (15 years ago) by mkubal
Branch: MAIN
Changes since 1.43: +204 -2 lines
Diff to previous 1.43
added cyanos and NMPDR extend

Revision 1.43 - (view) (download) (annotate) - [select for diffs]
Wed Sep 1 18:15:45 2004 UTC (15 years, 2 months ago) by mkubal
Branch: MAIN
Changes since 1.42: +8 -1 lines
Diff to previous 1.42
added genome counter to ssa2.cgi

Revision 1.42 - (view) (download) (annotate) - [select for diffs]
Tue Aug 31 14:18:27 2004 UTC (15 years, 2 months ago) by redwards
Branch: MAIN
Changes since 1.41: +2 -2 lines
Diff to previous 1.41
Added the number of contigs in the sequence to the Pick Organisms to Extend with list.
This is an approximate indicator of sequence quality.

Revision 1.41 - (view) (download) (annotate) - [select for diffs]
Tue Aug 31 14:14:55 2004 UTC (15 years, 2 months ago) by redwards
Branch: MAIN
Changes since 1.40: +3 -2 lines
Diff to previous 1.40
Maintains the state of the ignore alternatives checkbox

Revision 1.40 - (view) (download) (annotate) - [select for diffs]
Mon Aug 23 21:46:44 2004 UTC (15 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.39: +2 -1 lines
Diff to previous 1.39
Added javascript buttons for check all/none
Added color for annotations that are not the same as the primary annotations

Revision 1.39 - (view) (download) (annotate) - [select for diffs]
Tue Aug 10 01:10:05 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.38: +12 -2 lines
Diff to previous 1.38
fix colors on ssa2.cgi

Revision 1.38 - (view) (download) (annotate) - [select for diffs]
Mon Aug 9 11:52:36 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.37: +29 -20 lines
Diff to previous 1.37
fixes to ssa2.cgi relating to alternatives

Revision 1.37 - (view) (download) (annotate) - [select for diffs]
Mon Aug 9 04:20:36 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.36: +58 -35 lines
Diff to previous 1.36
handle alternatives on mismatches

Revision 1.36 - (view) (download) (annotate) - [select for diffs]
Sun Aug 8 23:43:27 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.35: +124 -28 lines
Diff to previous 1.35
include alternatives in ssa2.cgi

Revision 1.35 - (view) (download) (annotate) - [select for diffs]
Thu Aug 5 19:01:11 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.34: +1 -1 lines
Diff to previous 1.34
clean out env samples from spreadsheets

Revision 1.34 - (view) (download) (annotate) - [select for diffs]
Wed Aug 4 23:00:05 2004 UTC (15 years, 3 months ago) by gdpusch
Branch: MAIN
Changes since 1.33: +4 -3 lines
Diff to previous 1.33
Fixed invocation of `align_with_clustal`

Revision 1.33 - (view) (download) (annotate) - [select for diffs]
Wed Aug 4 19:42:10 2004 UTC (15 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.32: +1 -1 lines
Diff to previous 1.32
quote argument to rm -rf

Revision 1.32 - (view) (download) (annotate) - [select for diffs]
Wed Aug 4 19:35:04 2004 UTC (15 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +1 -1 lines
Diff to previous 1.31
force peg ids to stack in spreadsheet cells

Revision 1.31 - (view) (download) (annotate) - [select for diffs]
Sun Jul 25 21:48:15 2004 UTC (15 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.30: +17 -35 lines
Diff to previous 1.30
sort links

Revision 1.30 - (view) (download) (annotate) - [select for diffs]
Fri Jul 23 01:33:38 2004 UTC (15 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.29: +1 -1 lines
Diff to previous 1.29
fixed minor bug in ssa2.cgi

Revision 1.29 - (view) (download) (annotate) - [select for diffs]
Fri Jul 23 01:28:31 2004 UTC (15 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.28: +5 -1 lines
Diff to previous 1.28
fix minor errors associated with subsets in subsystems

Revision 1.28 - (view) (download) (annotate) - [select for diffs]
Tue Jul 20 18:20:14 2004 UTC (15 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.27: +3 -0 lines
Diff to previous 1.27
changes to delete subsystem_index entries when a subsystem is deleted

Revision 1.27 - (view) (download) (annotate) - [select for diffs]
Tue Jul 20 01:48:42 2004 UTC (15 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.26: +8 -1 lines
Diff to previous 1.26
add a few comments to the ssa2.cgi script to explain how to copy and merge subsystems

Revision 1.26 - (view) (download) (annotate) - [select for diffs]
Sun Jul 18 22:58:36 2004 UTC (15 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.25: +207 -16 lines
Diff to previous 1.25
handle bug that lost notes for subsystems

Revision 1.25 - (view) (download) (annotate) - [select for diffs]
Sat Jul 17 12:14:37 2004 UTC (15 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.24: +1 -1 lines
Diff to previous 1.24
show subsystems sorted

Revision 1.24 - (view) (download) (annotate) - [select for diffs]
Fri Jul 16 20:41:26 2004 UTC (15 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.23: +30 -40 lines
Diff to previous 1.23
updates to ssa2.cgi and warnings when assignments fail

Revision 1.23 - (view) (download) (annotate) - [select for diffs]
Thu Jul 1 21:27:15 2004 UTC (15 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.22: +1 -1 lines
Diff to previous 1.22
Join fids in spreadsheet with " " instead of "," so web browser
table renderers will split lines when necessary.

Revision 1.22 - (view) (download) (annotate) - [select for diffs]
Tue Jun 29 14:15:57 2004 UTC (15 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.21: +2 -2 lines
Diff to previous 1.21
Fix

Revision 1.21 - (view) (download) (annotate) - [select for diffs]
Mon Jun 28 20:13:34 2004 UTC (15 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.20: +23 -1 lines
Diff to previous 1.20
Add <a name> tags to subsystem spreadsheet.

Revision 1.20 - (view) (download) (annotate) - [select for diffs]
Fri Jun 18 15:57:30 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.19: +0 -2 lines
Diff to previous 1.19
Remove debug warn.

Revision 1.19 - (view) (download) (annotate) - [select for diffs]
Fri Jun 18 14:17:12 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.18: +4 -1 lines
Diff to previous 1.18
Fix bad bug in publish checkbox code.

Revision 1.18 - (view) (download) (annotate) - [select for diffs]
Wed Jun 16 16:52:10 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.17: +1 -0 lines
Diff to previous 1.17
Modifications to fix & finish up the automated subsystem extension.

Revision 1.17 - (view) (download) (annotate) - [select for diffs]
Wed Jun 16 14:07:13 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.16: +65 -2 lines
Diff to previous 1.16
Add support for invoking the Prolog subsystem extension code.

Revision 1.16 - (view) (download) (annotate) - [select for diffs]
Tue Jun 8 21:34:11 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.15: +31 -6 lines
Diff to previous 1.15
add code to do batch assignments

Revision 1.15 - (view) (download) (annotate) - [select for diffs]
Tue Jun 8 20:25:51 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.14: +83 -0 lines
Diff to previous 1.14
add new stuff for show_msising

Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Mon Jun 7 19:11:33 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.13: +2 -1 lines
Diff to previous 1.13
fix delete button

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Tue Jun 1 20:41:11 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.12: +12 -0 lines
Diff to previous 1.12
Add a call to db_sync() on the subsystem after it is written.

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Wed May 26 22:33:56 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.11: +1 -1 lines
Diff to previous 1.11
only allow curator to publish

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Wed May 26 22:32:15 2004 UTC (15 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.10: +6 -0 lines
Diff to previous 1.10
Add ss_export functionality.

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Thu May 20 13:38:37 2004 UTC (15 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.9: +51 -5 lines
Diff to previous 1.9
add "show input to alignment tool" option

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Wed May 19 21:34:23 2004 UTC (15 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +5 -0 lines
Diff to previous 1.8
fixed multiple identical rows in ssa due to import

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Tue May 4 18:19:55 2004 UTC (15 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.7: +72 -11 lines
Diff to previous 1.7
Added publish-to-clearinghouse support.

Reordered columns a bit.

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Mon Apr 26 11:54:25 2004 UTC (15 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +9 -6 lines
Diff to previous 1.6
on refill for ssa2.cgi, there are no bad entries

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Mon Apr 19 11:36:40 2004 UTC (15 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +12 -4 lines
Diff to previous 1.5
fix a bad bug in assignment permissions

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Mon Apr 12 17:39:41 2004 UTC (15 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +4 -2 lines
Diff to previous 1.4
fix ugly bug in ssa2.cgi - failed to pass can_alter flag properly

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Sat Apr 10 00:33:53 2004 UTC (15 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +6 -3 lines
Diff to previous 1.3
fix language in ssa intro

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Fri Apr 9 22:29:30 2004 UTC (15 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +172 -82 lines
Diff to previous 1.2
minimal protection against overwriting

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Fri Apr 2 18:14:45 2004 UTC (15 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +10 -9 lines
Diff to previous 1.1
fixes on ssa.cgi/ssa2.cgi

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Fri Apr 2 18:02:21 2004 UTC (15 years, 7 months ago) by overbeek
Branch: MAIN
add a new version of the spreadsheet software

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