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Revision 1.52 - (view) (download) (annotate) - [select for diffs]
Tue Apr 29 08:17:23 2008 UTC (11 years, 11 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, myrast_33, rast_2008_0924, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_release_2008_09_29
Changes since 1.51: +1 -1 lines
Diff to previous 1.51 , to selected 1.3
Changed to use new NMPDR mode protocol.

Revision 1.51 - (view) (download) (annotate) - [select for diffs]
Sun Feb 25 14:31:59 2007 UTC (13 years, 1 month ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.50: +1 -1 lines
Diff to previous 1.50 , to selected 1.3
fix bug on sims_cutoff in sigs.cgi

Revision 1.50 - (view) (download) (annotate) - [select for diffs]
Thu Jan 11 23:35:13 2007 UTC (13 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.49: +13 -5 lines
Diff to previous 1.49 , to selected 1.3
minor cosmetic changes

Revision 1.49 - (view) (download) (annotate) - [select for diffs]
Wed Dec 13 16:36:36 2006 UTC (13 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.48: +6 -2 lines
Diff to previous 1.48 , to selected 1.3
add support for FIGV in sigs.cgi

Revision 1.48 - (view) (download) (annotate) - [select for diffs]
Thu Oct 19 17:50:54 2006 UTC (13 years, 5 months ago) by redwards
Branch: MAIN
Changes since 1.47: +1 -0 lines
Diff to previous 1.47 , to selected 1.3
adding environmental samples as an hidden option

Revision 1.47 - (view) (download) (annotate) - [select for diffs]
Wed Oct 18 05:26:24 2006 UTC (13 years, 5 months ago) by parrello
Branch: MAIN
Changes since 1.46: +6 -3 lines
Diff to previous 1.46 , to selected 1.3
Added links to the subsystem page when subsystems are shown.

Revision 1.46 - (view) (download) (annotate) - [select for diffs]
Tue Oct 3 03:00:10 2006 UTC (13 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.45: +1 -1 lines
Diff to previous 1.45 , to selected 1.3
Converted to the even newer tracing.

Revision 1.45 - (view) (download) (annotate) - [select for diffs]
Mon Oct 2 03:06:10 2006 UTC (13 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.44: +11 -12 lines
Diff to previous 1.44 , to selected 1.3
Changed to use the new tracing system.

Revision 1.44 - (view) (download) (annotate) - [select for diffs]
Tue Sep 19 19:29:59 2006 UTC (13 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.43: +1 -1 lines
Diff to previous 1.43 , to selected 1.3
*** empty log message ***

Revision 1.43 - (view) (download) (annotate) - [select for diffs]
Tue Sep 19 19:28:21 2006 UTC (13 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.42: +1 -0 lines
Diff to previous 1.42 , to selected 1.3
Added CGI parameter tracing.

Revision 1.42 - (view) (download) (annotate) - [select for diffs]
Tue Sep 19 18:49:30 2006 UTC (13 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.41: +21 -12 lines
Diff to previous 1.41 , to selected 1.3
allow sigs.cgi to use BBHs under SEED

Revision 1.41 - (view) (download) (annotate) - [select for diffs]
Sat Aug 26 17:37:50 2006 UTC (13 years, 7 months ago) by parrello
Branch: MAIN
Changes since 1.40: +113 -89 lines
Diff to previous 1.40 , to selected 1.3
Rearranged page to make it easier to navigate.

Revision 1.40 - (view) (download) (annotate) - [select for diffs]
Mon Aug 14 04:57:29 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.39: +13 -5 lines
Diff to previous 1.39 , to selected 1.3
Updated some tracing.

Revision 1.39 - (view) (download) (annotate) - [select for diffs]
Thu Jul 20 05:37:45 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.38: +3 -3 lines
Diff to previous 1.38 , to selected 1.3
*** empty log message ***

Revision 1.38 - (view) (download) (annotate) - [select for diffs]
Thu Jul 20 05:17:11 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.37: +1 -0 lines
Diff to previous 1.37 , to selected 1.3
*** empty log message ***

Revision 1.37 - (view) (download) (annotate) - [select for diffs]
Thu Jul 20 05:13:15 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.36: +1 -1 lines
Diff to previous 1.36 , to selected 1.3
Fixed a bad template URL.

Revision 1.36 - (view) (download) (annotate) - [select for diffs]
Thu Jul 20 05:03:39 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.35: +158 -158 lines
Diff to previous 1.35 , to selected 1.3
Fixed a use statement.

Revision 1.35 - (view) (download) (annotate) - [select for diffs]
Thu Jul 20 04:58:43 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.34: +8 -1 lines
Diff to previous 1.34 , to selected 1.3
Converted to use a template for Sprout.

Revision 1.34 - (view) (download) (annotate) - [select for diffs]
Thu Jul 20 04:36:58 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.33: +1 -1 lines
Diff to previous 1.33 , to selected 1.3
Fixed the bbh signature. (deja vu)

Revision 1.33 - (view) (download) (annotate) - [select for diffs]
Thu Jul 20 03:51:24 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.32: +1 -1 lines
Diff to previous 1.32 , to selected 1.3
Fixed improper signature on the bbhs call.

Revision 1.32 - (view) (download) (annotate) - [select for diffs]
Wed Jul 19 21:38:07 2006 UTC (13 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +2 -3 lines
Diff to previous 1.31 , to selected 1.3
fix bad bug in sigs.cgi

Revision 1.31 - (view) (download) (annotate) - [select for diffs]
Wed Jul 19 20:26:41 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.30: +1 -0 lines
Diff to previous 1.30 , to selected 1.3
*** empty log message ***

Revision 1.30 - (view) (download) (annotate) - [select for diffs]
Wed Jul 19 20:23:08 2006 UTC (13 years, 8 months ago) by parrello
Branch: MAIN
Changes since 1.29: +1 -1 lines
Diff to previous 1.29 , to selected 1.3
Added tracing.

Revision 1.29 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 21:36:54 2006 UTC (13 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.28: +6 -6 lines
Diff to previous 1.28 , to selected 1.3
fix to sigs.cgi

Revision 1.28 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 20:06:38 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.27: +12 -6 lines
Diff to previous 1.27 , to selected 1.3
Tweaked tracing. Changed back to bbhs.

Revision 1.27 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 06:40:30 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.26: +3 -3 lines
Diff to previous 1.26 , to selected 1.3
Turned off tracing.

Revision 1.26 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 06:35:49 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.25: +1 -1 lines
Diff to previous 1.25 , to selected 1.3
*** empty log message ***

Revision 1.25 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 06:30:53 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.24: +0 -1 lines
Diff to previous 1.24 , to selected 1.3
Removed a warning trace.

Revision 1.24 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 06:10:14 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.23: +1 -3 lines
Diff to previous 1.23 , to selected 1.3
Converted from bbhs to sims.

Revision 1.23 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 06:04:12 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.22: +3 -2 lines
Diff to previous 1.22 , to selected 1.3
More tracing

Revision 1.22 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 05:47:23 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.21: +0 -3 lines
Diff to previous 1.21 , to selected 1.3
*** empty log message ***

Revision 1.21 - (view) (download) (annotate) - [select for diffs]
Wed Jul 12 05:31:07 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.20: +2 -2 lines
Diff to previous 1.20 , to selected 1.3
More tracing

Revision 1.20 - (view) (download) (annotate) - [select for diffs]
Mon Jul 10 21:29:17 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.19: +13 -4 lines
Diff to previous 1.19 , to selected 1.3
Added on-page tracing.

Revision 1.19 - (view) (download) (annotate) - [select for diffs]
Wed Jun 28 22:09:37 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.18: +2 -2 lines
Diff to previous 1.18 , to selected 1.3
*** empty log message ***

Revision 1.18 - (view) (download) (annotate) - [select for diffs]
Wed Jun 28 22:05:02 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.17: +1 -1 lines
Diff to previous 1.17 , to selected 1.3
*** empty log message ***

Revision 1.17 - (view) (download) (annotate) - [select for diffs]
Wed Jun 28 21:48:38 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.16: +7 -8 lines
Diff to previous 1.16 , to selected 1.3
Converted from sims to bbhs.

Revision 1.16 - (view) (download) (annotate) - [select for diffs]
Wed Jun 28 21:32:24 2006 UTC (13 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.15: +4 -2 lines
Diff to previous 1.15 , to selected 1.3
added tracing

Revision 1.15 - (view) (download) (annotate) - [select for diffs]
Mon Jan 30 22:00:15 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.14: +40 -12 lines
Diff to previous 1.14 , to selected 1.3
fixes to sigs.cgi for Leslie

Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Mon Dec 5 19:12:12 2005 UTC (14 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.13: +17 -0 lines
Diff to previous 1.13 , to selected 1.3
add license words

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Wed Sep 21 14:36:45 2005 UTC (14 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.12: +1 -4 lines
Diff to previous 1.12 , to selected 1.3
Remove the eval code wrapping around the "use sproutfig", since that logic is now
within SproutFIG.pm.

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Wed Sep 21 13:04:49 2005 UTC (14 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.11: +4 -1 lines
Diff to previous 1.11 , to selected 1.3
make Sprout optional in sigs.cgi

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Mon Sep 19 03:08:59 2005 UTC (14 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10 , to selected 1.3
fixes in BBH generation

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Sun Sep 18 14:27:13 2005 UTC (14 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +3 -1 lines
Diff to previous 1.9 , to selected 1.3
fix display_subsys.cgi

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Fri Sep 9 13:28:58 2005 UTC (14 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +24 -12 lines
Diff to previous 1.8 , to selected 1.3
upgrade sigs.cgi to run under Sprout

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Mon Feb 14 16:17:19 2005 UTC (15 years, 1 month ago) by overbeek
Branch: MAIN
CVS Tags: Root-bobdev_news, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.7: +17 -5 lines
Diff to previous 1.7 , to selected 1.3
minor addition to sigs.cgi

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Sat Apr 10 22:29:51 2004 UTC (16 years ago) by overbeek
Branch: MAIN
Changes since 1.6: +2 -1 lines
Diff to previous 1.6 , to selected 1.3
support similarity threshhold for computing intersections and signatures

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Thu Apr 8 16:38:05 2004 UTC (16 years ago) by overbeek
Branch: MAIN
Changes since 1.5: +99 -12 lines
Diff to previous 1.5 , to selected 1.3
support translation generation of new assignments

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Fri Feb 20 14:34:56 2004 UTC (16 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4 , to selected 1.3
fix expansion parm bug

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Sat Feb 7 02:11:18 2004 UTC (16 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +2 -0 lines
Diff to previous 1.3
fix minor bug in sigs.cgi

Revision 1.3 - (view) (download) (annotate) - [selected]
Fri Jan 2 20:30:27 2004 UTC (16 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +1 -1 lines
Diff to previous 1.2
use literal for complete

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Fri Jan 2 20:22:28 2004 UTC (16 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1 , to selected 1.3
pom.cgi and sig.cgi should consider only complete genomes

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Mon Dec 1 16:57:09 2003 UTC (16 years, 4 months ago) by efrank
Branch: MAIN
Branch point for: initial
Diff to selected 1.3
Initial revision

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