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revision 1.18, Wed Jun 28 22:05:02 2006 UTC revision 1.19, Wed Jun 28 22:09:37 2006 UTC
# Line 257  Line 257 
257          undef %hits_set1; undef %hits_set2;          undef %hits_set1; undef %hits_set2;
258          $hits_set1{&FIG::genome_of($peg)} = 1;          $hits_set1{&FIG::genome_of($peg)} = 1;
259    
260          foreach $sim ($fig_or_sprout->bbhs($peg) # sims($peg, 1000, $sim_cutoff, "fig"))          foreach $sim ($fig_or_sprout->bbhs($peg)) # sims($peg, 1000, $sim_cutoff, "fig"))
261          {          {
262              $id2          = $sim->[0]; # id2;              $id2          = $sim->[0]; # id2;
263              if ($id2 =~ /^fig\|(\d+\.\d+)/)              if ($id2 =~ /^fig\|(\d+\.\d+)/)

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