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Revision 1.4 - (download) (annotate)
Thu Sep 28 22:59:05 2006 UTC (13 years, 1 month ago) by redwards
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.3: +1 -1 lines
fixing broken links on map pages that refered fig ids to KEGG

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#

use FIG;
my $fig = new FIG;

use HTML;
use strict;
use GenoGraphics;
use CGI;
my $cgi = new CGI;

if (0)
{
    print $cgi->header;
    my @params = $cgi->param;
    print "<pre>\n";
    foreach $_ (@params)
    {
	print "$_\t:",join(",",$cgi->param($_)),":\n";
    }
    exit;
}

my(@output,@ecs_hit,@table);

my $map = $cgi->param('map');
my $org = $cgi->param('org');
@ecs_hit = ();
@table = ();

if ($org)
{
    my @ecs = $fig->map_to_ecs($map);
    my $user = $cgi->param('user');
    if (! $user) { $user = "" }
    my $hits = $fig->seqs_with_roles_in_genomes([$org],[@ecs],$user);
    if ($hits = $hits->{$org})
    {
	@ecs_hit = keys(%$hits);
	my $col_hdrs = ["EC","name","genes"];
	my $tab         = [];
	my($x,$ec);
	foreach $ec (sort @ecs_hit)
	{
	    if ($x = $hits->{$ec})
	    {
		push(@$tab,[$ec,$fig->ec_name($ec),join(",",map { &HTML::fid_link($cgi,$_->[0],1,0,1) } @$x)]);
	    }
	}
	my $gs = $fig->genus_species($org);
	@table = &HTML::make_table($col_hdrs,$tab,"Relevant Sequences for $gs");
	push(@table,$cgi->hr);
    }
}

my $url = "http://www.genome.ad.jp/dbget-bin/show_pathway?$map" . join("",map { "+" . $_ } @ecs_hit);
@output = &HTML::get_html($url,"get",[]);
    
my $i;
for ($i=0; ($i < @output) && ($output[$i] !~ /\<body\>/i); $i++) {}
if ($i == @output)
{
    for ($i=0; ($i < @output) && ($output[$i] !~ /\<html\>/i); $i++) {}
    if ($i == @output)
    {
	$i = -1;
    }
}

splice(@output,$i+1,0,@table);
# &HTML::show_page($cgi,\@output);
print @output;

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