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Revision 1.2 - (download) (annotate)
Wed Jun 15 21:03:56 2005 UTC (15 years, 1 month ago) by mkubal
Branch: MAIN
Changes since 1.1: +9 -3 lines
scopmap service

use FIG;
use CGI;
use Net::SMTP;
use File::Temp;
my $cgi = new CGI;

$ENV{PGPORT} = "10000";
$ENV{BLASTMAT} ="/disks/space0/fig/FIGdisk.Nov20/BLASTMAT";
$ENV{PATH}="/disks/space0/fig/FIGdisk.Nov20/env/linux-postgres/bin:/disks/space0/fig/FIGdisk.Nov20/FIG/bin:/disks/space0/fig/FIGdisk.Nov20/bin:/bin:/usr/bin:/usr/local/bin:/opt/bin:/usr/i386-pc-linux-gnu/gcc-bin/3.3.5:/opt/Acrobat5:/usr/X11R6/bin:/opt/blackdown-jdk-1.4.2.01/bin:/opt/blackdown-jdk-1.4.2.01/jre/bin:/usr/qt/3/bin:/usr/kde/3.3/bin:/usr/kde/3.2/bin:/home.old/yqi/prog/ncbi/build:/home.old/yqi/prj_scopmap/bin:/home.old/yqi/prj_scopmap/db/fasta:/home.old/yqi/prj_scopmap/prog/ncbi/data:/disks/space0/fig/FIGdisk.Nov20/BLASTMAT:$ENV{PATH}";

print "Content-type: text/html\r\n\r\n";
print "<HTML>\n";
print "<HEAD><TITLE>Structural Classification Tool!</TITLE></HEAD>\n";
print "<BODY>\n";
print "<H2>SCOPmap Service</H2>\n";
print "<H5><a href='http://www.biomedcentral.com/1471-2105/5/197'>research article on SCOPmap</a></H5>\n";
print "<H5>special thanks to Yuan Qi, Sara Cheek and Nick Grishin for the SCOPmap program and their support</H5>\n";
my @params = $cgi-> param();
if($cgi->param('seq') && $cgi->param('email')){
    my $seq = $cgi->param('seq');
    my $email = $cgi->param('email');
    my $subject = $cgi->param('subject');
    ($fh, $filename) = mkstemp("/disks/space0/fig/Tmp/tmpfileXXXXX");
    `chmod 777 $filename`;		

    #my $seq = "MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVPENTRLFEMVKRKESEYERIGTGLPRPW";
    if (-e "1234_A.fa"){ system "rm 1234_A.fa";}
   
    $seq =~ s/\n//g;
    $seq =~ s/\s//g;	
    print "The results will be sent to $email\n"; 	 
    system "python /disks/space0/fig/Tmp/seq2pdb.py $seq $filename";
    system "perl /disks/space0/fig/Tmp/launcher.pl $filename $email $subject";
    

} else {
	print "<FORM method='POST' action='scopmap_service.cgi'>
		    <h3>Enter email address:</h3>
		    <p><INPUT type='text' name='email'></p>
		    <h3>Enter sequence identifier (protein name, id, etc ...):</h3>	
		    <p><INPUT type='text' name='subject'></p>	
		    <h3>Enter protein sequence:</h3>
		    <p><TEXTAREA rows='20' cols='100' name='seq'> </TEXTAREA></p>
		    <p><INPUT type='submit' value='Launch SCOPmap'></p>
		    <h3>Reset this Form</h3>
		    <p><INPUT type='reset' value='Clear all my input now'></p>
		</FORM>\n";
}

print "</BODY>\n";
print "</HTML>\n";


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