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Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Sat Aug 13 21:36:45 2011 UTC (8 years, 3 months ago) by golsen
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_2, mgrast_version_3_2, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.13: +38 -27 lines
Diff to previous 1.13
Add fraction identity filter for paralogs.
Improve handling of links to the proteins in the tree.

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Sat Aug 13 18:28:09 2011 UTC (8 years, 3 months ago) by golsen
Branch: MAIN
Changes since 1.12: +2 -2 lines
Diff to previous 1.12
Change protein.cgi links to have Target=_blank

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Sat Feb 19 21:51:07 2011 UTC (8 years, 8 months ago) by golsen
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, myrast_rel40
Changes since 1.11: +2 -2 lines
Diff to previous 1.11
Change default tree program to clustalw.

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Tue Jul 7 22:14:22 2009 UTC (10 years, 4 months ago) by golsen
Branch: MAIN
CVS Tags: myrast_33, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.10: +85 -53 lines
Diff to previous 1.10
Improved tree printer-plot graphics. Total redesign.

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Wed Jul 1 00:23:36 2009 UTC (10 years, 4 months ago) by golsen
Branch: MAIN
Changes since 1.9: +4 -2 lines
Diff to previous 1.9
Further tweeking of printerplot tree formats (particularly in fid_checked).

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Wed Jul 1 00:08:52 2009 UTC (10 years, 4 months ago) by golsen
Branch: MAIN
Changes since 1.8: +88 -45 lines
Diff to previous 1.8
Modifications to support line-drawing character set in tree printer plots.

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Sun Jun 28 21:48:24 2009 UTC (10 years, 4 months ago) by golsen
Branch: MAIN
Changes since 1.7: +19 -26 lines
Diff to previous 1.7
Fix bugs in mechanism for adding genomes.

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Sun Jun 28 03:28:49 2009 UTC (10 years, 4 months ago) by golsen
Branch: MAIN
Changes since 1.6: +3 -3 lines
Diff to previous 1.6
Try to fix a cgi paramater name issue.

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Sun Jun 28 02:05:34 2009 UTC (10 years, 4 months ago) by golsen
Branch: MAIN
Changes since 1.5: +372 -56 lines
Diff to previous 1.5
Add role and genome edit abilities, and fix the protein page links to
sense the present or not of the SeedViewer.

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Sat Jun 27 18:56:26 2009 UTC (10 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +53 -11 lines
Diff to previous 1.4
for Gary

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Fri Jun 26 00:06:26 2009 UTC (10 years, 4 months ago) by golsen
Branch: MAIN
Changes since 1.3: +219 -67 lines
Diff to previous 1.3
New super duper ala Peter T. Hooper paralog resolution interface.

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Thu Jun 25 18:48:28 2009 UTC (10 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +4 -4 lines
Diff to previous 1.2
second cut

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Thu Jun 25 18:43:16 2009 UTC (10 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +117 -1 lines
Diff to previous 1.1
first cut

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Thu Jun 25 18:19:16 2009 UTC (10 years, 4 months ago) by overbeek
Branch: MAIN
dummy for Danniela

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