[Bio] / FigWebServices / proteinfamilies.cgi Repository:
ViewVC logotype

Log of /FigWebServices/proteinfamilies.cgi

Parent Directory Parent Directory


Links to HEAD: (view) (download) (annotate)
Links to mgrast_dev_02222011: (view) (download) (annotate)
Sticky Tag:

Revision 1.48 - (view) (download) (annotate) - [select for diffs]
Thu Aug 7 18:13:25 2008 UTC (11 years, 7 months ago) by arodri7
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.47: +6 -4 lines
Diff to previous 1.47
redirect to new FIGfam page

Revision 1.47 - (view) (download) (annotate) - [select for diffs]
Fri Jan 27 20:30:38 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00, mgrast_rel_2008_0806, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21
Changes since 1.46: +1 -1 lines
Diff to previous 1.46
RAE: Changes to Protein Families

Revision 1.46 - (view) (download) (annotate) - [select for diffs]
Fri Jan 27 20:28:00 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.45: +1 -1 lines
Diff to previous 1.45
RAE: Changes to Protein Families

Revision 1.45 - (view) (download) (annotate) - [select for diffs]
Fri Jan 27 20:24:55 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.44: +26 -2 lines
Diff to previous 1.44
RAE: Changes to Protein Families

Revision 1.44 - (view) (download) (annotate) - [select for diffs]
Fri Jan 27 05:05:36 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.43: +6 -3 lines
Diff to previous 1.43
RAE: protein family update

Revision 1.43 - (view) (download) (annotate) - [select for diffs]
Wed Jan 25 04:12:20 2006 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.42: +110 -8 lines
Diff to previous 1.42
RAE: Updating proteinfamilies

Revision 1.42 - (view) (download) (annotate) - [select for diffs]
Mon Jan 2 23:58:49 2006 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.41: +3 -6 lines
Diff to previous 1.41
RAE: Adding statistics to protein families

Revision 1.41 - (view) (download) (annotate) - [select for diffs]
Wed Dec 21 23:51:50 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.40: +69 -7 lines
Diff to previous 1.40
RAE: Adding statistics to protein families

Revision 1.40 - (view) (download) (annotate) - [select for diffs]
Wed Dec 21 19:14:13 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.39: +7 -4 lines
Diff to previous 1.39
RAE: Protein Families interface and construction

Revision 1.39 - (view) (download) (annotate) - [select for diffs]
Thu Dec 15 22:03:26 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.38: +7 -7 lines
Diff to previous 1.38
RAE: adding class to tables

Revision 1.38 - (view) (download) (annotate) - [select for diffs]
Thu Dec 15 20:48:04 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.37: +14 -10 lines
Diff to previous 1.37
RAE: proteinfamilies.cgi links

Revision 1.37 - (view) (download) (annotate) - [select for diffs]
Wed Dec 14 06:25:49 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.36: +12 -7 lines
Diff to previous 1.36
RAE: Protein family updates

Revision 1.36 - (view) (download) (annotate) - [select for diffs]
Sat Dec 10 23:05:58 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.35: +158 -310 lines
Diff to previous 1.35
RAE: extending protein families

Revision 1.35 - (view) (download) (annotate) - [select for diffs]
Tue Dec 6 08:24:02 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.34: +7 -3 lines
Diff to previous 1.34
adding combine function

Revision 1.34 - (view) (download) (annotate) - [select for diffs]
Tue Dec 6 06:57:17 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.33: +119 -28 lines
Diff to previous 1.33
Updating protein families

Revision 1.33 - (view) (download) (annotate) - [select for diffs]
Mon Dec 5 19:12:12 2005 UTC (14 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.32: +17 -0 lines
Diff to previous 1.32
add license words

Revision 1.32 - (view) (download) (annotate) - [select for diffs]
Mon Nov 28 04:31:07 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.31: +189 -47 lines
Diff to previous 1.31
updating protein families

Revision 1.31 - (view) (download) (annotate) - [select for diffs]
Sun Nov 27 19:49:53 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.30: +11 -4 lines
Diff to previous 1.30
adding score

Revision 1.30 - (view) (download) (annotate) - [select for diffs]
Wed Nov 23 22:45:46 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.29: +20 -8 lines
Diff to previous 1.29
correcting cog links

Revision 1.29 - (view) (download) (annotate) - [select for diffs]
Wed Nov 23 21:11:01 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.28: +1 -1 lines
Diff to previous 1.28
changing a color

Revision 1.28 - (view) (download) (annotate) - [select for diffs]
Wed Nov 23 21:06:01 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.27: +1 -0 lines
Diff to previous 1.27
changing a color

Revision 1.27 - (view) (download) (annotate) - [select for diffs]
Wed Nov 23 20:34:59 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.26: +168 -436 lines
Diff to previous 1.26
major changes to attributes and protein families. There are changes to several modules to deal with new attributes database, and simultaneous updates to protein families

Revision 1.26 - (view) (download) (annotate) - [select for diffs]
Tue Oct 25 17:41:32 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.25: +25 -10 lines
Diff to previous 1.25
more more more proteinfamily stuff

Revision 1.25 - (view) (download) (annotate) - [select for diffs]
Tue Oct 25 15:17:47 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.24: +7 -1 lines
Diff to previous 1.24
correcting reversing famlies

Revision 1.24 - (view) (download) (annotate) - [select for diffs]
Tue Oct 25 14:54:26 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.23: +1 -3 lines
Diff to previous 1.23
pf was right, forgot to load ext ids! Correcting again

Revision 1.23 - (view) (download) (annotate) - [select for diffs]
Tue Oct 25 14:50:24 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.22: +6 -4 lines
Diff to previous 1.22
protein families again

Revision 1.22 - (view) (download) (annotate) - [select for diffs]
Tue Oct 25 14:20:20 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.21: +203 -41 lines
Diff to previous 1.21
All new proteinfamilies

Revision 1.21 - (view) (download) (annotate) - [select for diffs]
Sat Oct 22 17:43:49 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.20: +223 -3 lines
Diff to previous 1.20
changing the format of attribute_keys

Revision 1.20 - (view) (download) (annotate) - [select for diffs]
Wed Oct 12 21:03:16 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.19: +2 -2 lines
Diff to previous 1.19
Broad minor fixes to make the SEED use relative paths throughout.

(The motivation this is to fully enable hiding the actual location of a running SEED system behind a web proxy so that things like NMPDR protein page references can be made stable across multiple releases).

This involved things like the following:

Changing $cgi->url() to $cgi->url(-relative => 1)
Changing $cgi->self_url() to $cgi->url(-relative => 1, -query => 1, -path_info => 1)

Changing the definition of FIG::cgi_url() to return "." (this may break something, but I haven't found it yet).

Revision 1.19 - (view) (download) (annotate) - [select for diffs]
Thu Oct 6 22:44:02 2005 UTC (14 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.18: +26 -7 lines
Diff to previous 1.18
adding more functions with external ids

Revision 1.18 - (view) (download) (annotate) - [select for diffs]
Wed Oct 5 21:09:20 2005 UTC (14 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.17: +51 -21 lines
Diff to previous 1.17
adding more differentiations

Revision 1.17 - (view) (download) (annotate) - [select for diffs]
Wed Oct 5 15:48:22 2005 UTC (14 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.16: +137 -6 lines
Diff to previous 1.16
differentiating sets

Revision 1.16 - (view) (download) (annotate) - [select for diffs]
Mon Oct 3 23:22:48 2005 UTC (14 years, 6 months ago) by redwards
Branch: MAIN
Changes since 1.15: +5 -0 lines
Diff to previous 1.15
adding cids and merges to proteinfamilies.cgi

Revision 1.15 - (view) (download) (annotate) - [select for diffs]
Mon Oct 3 22:50:46 2005 UTC (14 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.14: +31 -7 lines
Diff to previous 1.14
Adding cids to table

Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Mon Aug 8 18:43:08 2005 UTC (14 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +43 -2 lines
Diff to previous 1.13
adding fig versus kegg

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Thu Aug 4 20:08:55 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
minor removing button

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Fri Jul 29 15:26:30 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.11: +52 -93 lines
Diff to previous 1.11
upating protein families by rob

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Fri Jul 29 06:29:25 2005 UTC (14 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +114 -291 lines
Diff to previous 1.10
completely reworking

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Thu Jul 14 20:40:22 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.9: +133 -3 lines
Diff to previous 1.9
Protein Families Sort of Works Now. So Dont Touch IT!!!!

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Thu Jul 14 05:16:53 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
Changes to protein families that no sane person should ever view. Pay no attention to me

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Thu Jul 14 05:13:58 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.7: +2 -2 lines
Diff to previous 1.7
Changes to protein families that no sane person should ever view. Pay no attention to me

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Thu Jul 14 05:05:28 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.6: +74 -2 lines
Diff to previous 1.6
Changes to protein families that no sane person should ever view. Pay no attention to me

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Wed Jul 13 04:16:28 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.5: +2 -2 lines
Diff to previous 1.5
Changes to proteinfamilies representations

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Wed Jul 13 03:57:22 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.4: +57 -1 lines
Diff to previous 1.4
putting a line break back in for vv

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Wed Jul 13 01:49:55 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.3: +59 -22 lines
Diff to previous 1.3
minor changes to subsys_vectors to allow complete genomes

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Tue Jul 12 14:34:15 2005 UTC (14 years, 8 months ago) by redwards
Branch: MAIN
CVS Tags: merge-trunktag-bodev_news-3
Changes since 1.2: +16 -14 lines
Diff to previous 1.2
Changing attributes and modifying protein.cgi with show/hides

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Fri Jul 1 02:09:16 2005 UTC (14 years, 9 months ago) by redwards
Branch: MAIN
Changes since 1.1: +140 -145 lines
Diff to previous 1.1
Changed proteinfamilies.cgi

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Wed Jun 29 00:28:01 2005 UTC (14 years, 9 months ago) by redwards
Branch: MAIN
CVS Tags: merge-trunktag-bobdev_news-2
Branch point for: Branch-bobdev_news
Initial release of proteinfamilies.cgi into the wild

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3