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Revision 1.4 - (view) (download)
| 1 : | mkubal | 1.1 | use FIG; |
| 2 : | my $fig = new FIG; | ||
| 3 : | use HTML; | ||
| 4 : | use CGI; | ||
| 5 : | |||
| 6 : | my $cgi = new CGI; | ||
| 7 : | my $html = []; | ||
| 8 : | |||
| 9 : | if($cgi->param('genome') && $cgi->param('attribute') && $cgi->param('value')) | ||
| 10 : | { | ||
| 11 : | |||
| 12 : | push (@$html, "<TITLE>Connect Pegs with Attributes to Subsystems</TITLE>"); | ||
| 13 : | |||
| 14 : | my $genome_string = $cgi->param('genome'); | ||
| 15 : | mkubal | 1.2 | my @string_parts = split(", ",$genome_string); |
| 16 : | mkubal | 1.1 | my $genome = $string_parts[1]; |
| 17 : | my $att_param = $cgi->param('attribute'); | ||
| 18 : | my $value_param = $cgi->param('value'); | ||
| 19 : | |||
| 20 : | my @pegs = $fig->pegs_of($genome); | ||
| 21 : | my %list_of_ss; | ||
| 22 : | foreach my $peg (@pegs) { | ||
| 23 : | next unless (my @attr=$fig->get_attributes($peg)); | ||
| 24 : | foreach my $attr (@attr) { | ||
| 25 : | next unless (defined $attr); | ||
| 26 : | my ($gotpeg, $tag, $val, $link)=@$attr; | ||
| 27 : | $tag = uc($tag); | ||
| 28 : | next unless ($tag eq $att_param); | ||
| 29 : | next unless($val eq $value_param); | ||
| 30 : | my @subsystems = $fig->subsystems_for_peg($peg); | ||
| 31 : | foreach my $ss (@subsystems) | ||
| 32 : | { | ||
| 33 : | my $ss_name = $ss->[0]; | ||
| 34 : | $list_of_ss{$ss_name} = "1"; | ||
| 35 : | } | ||
| 36 : | } | ||
| 37 : | } | ||
| 38 : | my @list = keys(%list_of_ss); | ||
| 39 : | |||
| 40 : | olson | 1.4 | my $prefix = &FIG::cgi_url() . "/subsys.cgi?user=&ssa_name="; |
| 41 : | mkubal | 1.1 | my $suffix = "&request=show_ssa"; |
| 42 : | push(@$html,"<TABLE>"); | ||
| 43 : | foreach my $s (@list) | ||
| 44 : | { | ||
| 45 : | my $url = "<a href='$prefix.$s.$suffix'>$s</a>"; | ||
| 46 : | push(@$html,"<TR><TD>$url</TD></TR>"); | ||
| 47 : | |||
| 48 : | } | ||
| 49 : | push(@$html,"</TABLE>"); | ||
| 50 : | &HTML::show_page($cgi,$html); | ||
| 51 : | } | ||
| 52 : | |||
| 53 : | else{ | ||
| 54 : | |||
| 55 : | mkubal | 1.3 | $html = []; |
| 56 : | push @$html, "<TITLE>Connect Pegs with Attributes to Subsystems</TITLE>"; | ||
| 57 : | mkubal | 1.1 | |
| 58 : | mkubal | 1.3 | push(@$html,$cgi->start_form(-action => "ma2sub.cgi", -method => 'post')); |
| 59 : | mkubal | 1.1 | |
| 60 : | |||
| 61 : | mkubal | 1.3 | my @gs_list; |
| 62 : | my @genomes = $fig->genomes('complete'); | ||
| 63 : | foreach $g (@genomes){ | ||
| 64 : | my $gs = $fig->genus_species($g); | ||
| 65 : | push(@gs_list, $gs.", ".$g); | ||
| 66 : | } | ||
| 67 : | |||
| 68 : | @gs_list2 =sort {uc($a) cmp uc($b)} @gs_list; | ||
| 69 : | push(@$html, | ||
| 70 : | $cgi->h3("select genome"), | ||
| 71 : | $cgi->scrolling_list(-name => 'genome', | ||
| 72 : | mkubal | 1.1 | -values => [@gs_list2], |
| 73 : | -size => 10, | ||
| 74 : | -multiple => 1 | ||
| 75 : | ), | ||
| 76 : | mkubal | 1.3 | $cgi->hr |
| 77 : | ); | ||
| 78 : | |||
| 79 : | #my $opt=$fig->get_keys("peg"); # all the peg tags | ||
| 80 : | #my @options=sort {uc($a) cmp uc($b)} keys %$opt; | ||
| 81 : | #unshift(@options, undef); | ||
| 82 : | @options =("microarray_sigmaB_regulon","pH_75_vs_55"); | ||
| 83 : | push(@$html,$cgi->h3("select experiment"), $cgi->popup_menu(-name => 'attribute', -values=>\@options), $cgi->br, $cgi->hr); | ||
| 84 : | mkubal | 1.1 | |
| 85 : | mkubal | 1.3 | @options2 = ("up regulated","down regulated"); |
| 86 : | push(@$html,$cgi->h3("select value"), $cgi->popup_menu(-name => 'value', -values=>\@options2), $cgi->br,$cgi->hr); | ||
| 87 : | mkubal | 1.1 | |
| 88 : | mkubal | 1.3 | push(@$html,$cgi->submit('find subsystems'), $cgi->end_form); |
| 89 : | mkubal | 1.1 | |
| 90 : | mkubal | 1.3 | &HTML::show_page($cgi,$html); |
| 91 : | mkubal | 1.1 | |
| 92 : | olson | 1.4 | } |
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