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Revision 1.3 - (download) (annotate)
Mon Dec 5 19:12:12 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.2: +17 -0 lines
add license words

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#

use strict;

use FIG;
my $fig = new FIG;

use HTML;
use Data::Dumper;

use CGI;
my $cgi = new CGI;

use Construct qw(/.*/);

if (0)
{
    my $VAR1;
    eval(join("",`cat /tmp/protein_parms`));
    $cgi = $VAR1;
#   print STDERR &Dumper($cgi);
}

if (0)
{
    print $cgi->header;
    my @params = $cgi->param;
    print "<pre>\n";
    foreach $_ (@params)
    {
	print "$_\t:",join(",",$cgi->param($_)),":\n";
    }

    if (0)
    {
	if (open(TMP,">/tmp/protein_parms"))
	{
	    print TMP &Dumper($cgi);
	    close(TMP);
	}
    }
    exit;
}

my $html = [];

unshift @$html, "<TITLE>subsys constructs</TITLE>\n";

#
# Figure out what subsystem we're in.
#

my $sub_name = $cgi->param('ssa');

if (!defined($sub_name))
{
    push(@$html, $cgi->p, "Subsystem name must be provided\n");
    HTML::show_page($cgi, $html);
    exit;
}

my $sub = $fig->get_subsystem($sub_name);

push(@$html, $cgi->h1($sub->get_name()));
push(@$html, $cgi->a({href => "Html/Constructs.html"},
		     "More information on constructs"),
     $cgi->p);

my (@val);

if ($cgi->param('Update'))
{
    push(@$html, "we've been updated!\n");

    @val = get_constructs_from_form($cgi);
    my $verrs = [];
    if (validate_constructs(\@val, $sub, $verrs))
    {	
	my $constructs_file = "$sub->{dir}/constructs";
	system("cp $constructs_file $constructs_file.bak");
	write_constructs_file(\@val, $constructs_file);
    }
    else
    {
	push(@$html, $cgi->p,
	     "Validation failed");
	push(@$html, "<ul>\n", "<li> ", join("<li>\n", @$verrs), "</ul>\n");
    }
    
    # push(@$html, "<pre>\n", Dumper(\@val), "</pre>\n");
}
else
{
    my $constructs_file = "$sub->{dir}/constructs";

    #
    # Create empty file if it's not already there.
    #

    if (! -f $constructs_file)
    {
	open(my $fh, ">$constructs_file");
	close($fh);
    }
    
    @val = parse_constructs_file($constructs_file, $sub);
 }

push(@$html, $cgi->start_form(-name => "construct_form",
			      -method => 'POST',
			      -action => 'construct.cgi'));

push(@$html, $cgi->hidden(-name => 'ssa', -value => $sub_name));

my $ctable = make_html(\@val, $cgi);
push(@$html, $ctable);

push(@$html, $cgi->submit("Update"));

push(@$html, $cgi->end_form);

HTML::show_page($cgi, $html);

#write_constructs_file(\@val, "/tmp/foo");


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