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Revision 1.3 - (download) (annotate)
Mon Dec 5 19:12:12 2005 UTC (14 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.2: +17 -0 lines
add license words

# -*- perl -*-
#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#


use FIG;
my $fig = new FIG;

use CGI;
my $cgi = new CGI;
use HTML;


if (0)
{
    my $VAR1;
    eval(join("",`cat /tmp/consistent_sets`));
    $cgi = $VAR1;
#   print STDERR &Dumper($cgi);
}

if (0)
{
    print $cgi->header;
    my @params = $cgi->param;
    print "<pre>\n";
    foreach $_ (@params)
    {
	print "$_\t:",join(",",$cgi->param($_)),":\n";
    }

    if (0)
    {
	if (open(TMP,">/tmp/consistent_sets"))
	{
	    print TMP &Dumper($cgi);
	    close(TMP);
	}
    }
    exit;
}

my $html = [];

my $user = $cgi->param('user');
my $sets = $cgi->param('sets');
my $n    = $cgi->param('n');

if (! $user)
{
    print $cgi->header,$cgi->h1('You need to specify a user'),"\n";
    exit;
}

if ((! $sets) || (! -s $sets))
{
    print $cgi->header,$cgi->h1('You need to specify a complete path to the file containing sets'),"\n";
    exit;
}

if (! $n)
{
    $n = 20;
}

open(SETS,"<$sets") || die "could not open $sets";

my %funcs;
my $peg_sets = [];

my $tot = 0;
while ( defined($_ = <SETS>))
{
    chomp;
    my @pegs = split(/\t/,$_);
    undef %funcs;

    my $peg;
    foreach $peg (@pegs)
    {
        my $func = $fig->function_of($peg);
        $funcs{$func}++;
    }

    if (keys(%funcs) > 1)
    {
        $tot++;
        if (@$peg_sets < $n)
        {
            push(@$peg_sets,[@pegs]);
        }
    }
}
push(@$html,$cgi->h1("$tot sets left to process\n"));
push(@$html,&HTML::html_for_assignments($fig,$user,$peg_sets));
&HTML::show_page($cgi,$html);

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