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Revision 1.17 - (view) (download) (annotate) - [select for diffs]
Sat Aug 23 23:39:22 2008 UTC (11 years, 2 months ago) by golsen
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.16: +5 -12 lines
Diff to previous 1.16
Move writing of assignment annotation from a case-by-case basis (and it
was missing in several key places) to the FIG::assign_function.

Modify the code in each of the calling locations to not make duplicate
annotations.

At the same time, remove (most) of the instances of making different
calls to assign_function depending on the user name.  assign_function
treats everyone as master (but writes an annotation with the real user
name).

Revision 1.16 - (view) (download) (annotate) - [select for diffs]
Thu Apr 17 18:32:19 2008 UTC (11 years, 7 months ago) by disz
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07
Changes since 1.15: +20 -7 lines
Diff to previous 1.15
Display subsystems on hover

Revision 1.15 - (view) (download) (annotate) - [select for diffs]
Tue Mar 25 17:31:54 2008 UTC (11 years, 7 months ago) by disz
Branch: MAIN
Changes since 1.14: +69 -7 lines
Diff to previous 1.14
Additions for the JAVA tree based annotations

Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Mon Mar 10 21:51:29 2008 UTC (11 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +7 -8 lines
Diff to previous 1.13
weed out deleted PEGs from tree based annotation

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Mon Mar 10 21:41:01 2008 UTC (11 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +8 -0 lines
Diff to previous 1.12
weed out deleted PEGs from tree based annotation

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Fri Sep 7 21:06:04 2007 UTC (12 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.11: +39 -1 lines
Diff to previous 1.11
allow resetting trees in processing alignments/trees

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Wed Aug 8 18:55:52 2007 UTC (12 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
strip comments when collapsing trees

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Wed Aug 8 18:43:37 2007 UTC (12 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +1 -0 lines
Diff to previous 1.9
strip comments when collapsing trees

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Wed Jul 18 02:18:24 2007 UTC (12 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +5 -1 lines
Diff to previous 1.8
show in subsystems for tree-based annotation

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Sun Jul 15 16:22:31 2007 UTC (12 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +58 -0 lines
Diff to previous 1.7
support displaying alignments dueing tree-based annotation

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Sun Jul 15 04:08:16 2007 UTC (12 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +27 -16 lines
Diff to previous 1.6
allow acces to alignment library from protein page

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Wed Jan 11 02:55:44 2006 UTC (13 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.5: +126 -6 lines
Diff to previous 1.5
fixes to assign_using

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Mon Dec 5 19:12:11 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.4: +17 -0 lines
Diff to previous 1.4
add license words

Revision 1.2.2.1 - (view) (download) (annotate) - [select for diffs]
Mon Jun 27 15:26:45 2005 UTC (14 years, 4 months ago) by olson
Branch: Branch-bobdev_news
CVS Tags: merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3
Changes since 1.2: +76 -72 lines
Diff to previous 1.2 , to next main 1.17
Merged from trunk.

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Sun Jun 19 14:03:43 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Changes since 1.3: +1 -1 lines
Diff to previous 1.3
minor fix to rerooting in assign_using_tree.cgi

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Sun Jun 19 13:06:21 2005 UTC (14 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +75 -71 lines
Diff to previous 1.2
fix to assign_using_tree.cgi - check for tree before parsing

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Tue May 10 12:03:39 2005 UTC (14 years, 6 months ago) by overbeek
Branch: MAIN
CVS Tags: Root-bobdev_news
Branch point for: Branch-bobdev_news
Changes since 1.1: +54 -35 lines
Diff to previous 1.1
fixes to using trees under subsystems

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Tue Nov 16 03:29:35 2004 UTC (15 years ago) by overbeek
Branch: MAIN
add assign_using_tree and fix overlays in pinned regions

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