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Revision 1.17 - (view) (download) (annotate) - [select for diffs]
Tue Sep 27 22:00:19 2011 UTC (8 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_2, mgrast_version_3_2, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.16: +18 -424 lines
Diff to previous 1.16
Move inline code out of anno_server.cgi to ANNO.pm (well the code was already moved; remove
the inline invocations).
Add tests.

Revision 1.16 - (view) (download) (annotate) - [select for diffs]
Thu Oct 28 19:12:56 2010 UTC (9 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, myrast_33, myrast_rel40, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.15: +66 -0 lines
Diff to previous 1.15
kmer dataset querying changes

Revision 1.15 - (view) (download) (annotate) - [select for diffs]
Mon Sep 20 16:34:05 2010 UTC (9 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0928
Changes since 1.14: +2 -1 lines
Diff to previous 1.14
Add -determineFamily and -returnFamilySims to allowed arguments list for assign_function_to_prot

Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Thu Aug 26 22:03:32 2010 UTC (9 years, 6 months ago) by parrello
Branch: MAIN
Changes since 1.13: +1 -16 lines
Diff to previous 1.13
Updates for the excel stuff.

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Wed Aug 25 15:48:47 2010 UTC (9 years, 6 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2010_0827
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
Added support for small DNA function service.

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Thu Jun 3 15:30:49 2010 UTC (9 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.11: +2 -2 lines
Diff to previous 1.11
fix end-of-service bug

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Fri Apr 16 21:37:09 2010 UTC (9 years, 10 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
Push down default max requests.

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Wed Apr 14 20:52:22 2010 UTC (9 years, 10 months ago) by olson
Branch: MAIN
Changes since 1.9: +3 -1 lines
Diff to previous 1.9
use the blast db that goes with the selected release

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Thu Mar 25 16:04:56 2010 UTC (9 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.8: +38 -15 lines
Diff to previous 1.8
Updates for glimmer training and special-protein finder.

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Mon Mar 1 21:09:41 2010 UTC (9 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.7: +0 -1 lines
Diff to previous 1.7
wup, remove debugging die.

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Mon Mar 1 20:58:56 2010 UTC (9 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.6: +82 -6 lines
Diff to previous 1.6
Support multiple datasets.

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Fri Feb 19 17:39:57 2010 UTC (10 years ago) by olson
Branch: MAIN
Changes since 1.5: +3 -1 lines
Diff to previous 1.5
Change to make protein assignment return all ids even with -assignToAll not set; so we can tell
explicitly what IDs did not get assignments.

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Tue Dec 22 21:16:19 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0118
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
fix corner case on -assignToAll

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Fri Dec 18 16:53:24 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.3: +7 -7 lines
Diff to previous 1.3
remove debugging

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Fri Dec 11 20:49:27 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.2: +4 -8 lines
Diff to previous 1.2
Add support for using ServerThing to redirect any non-locally-handled functions to ANNO.pm

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Thu Dec 10 22:45:53 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.1: +4 -1 lines
Diff to previous 1.1
clear PERL5LIB before running trna finder

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Thu Dec 10 19:38:35 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
annotation support server

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