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File Rev. Age Author Last log entry
 Parent Directory        
SeedComponents/        
WebApplicationComponents/        
tests/        
COPYING.TXT  1.1  14 years  olson  add license file
DocDirectory.cgi  1.6  14 years  olson  add license words
FigSQL.cgi  1.1  14 years  parrello  New script used by the FIG query form.
FormDisplay.cgi  1.2  14 years  olson  add license words
HOPSS.cgi  1.8  14 years  olson  add license words
Makefile  1.12  14 years  olson  add license words
README  1.1.1.1  16 years  efrank   import
SetObject.cgi  1.14  14 years  parrello  Converted to allow specification of a subsystem for which a subsystem object wou...
SetPassword.cgi  1.4  14 years  olson  add license words
ShowPage.cgi  1.2  14 years  olson  add license words
SimBlockDisplay.cgi  1.4  14 years  parrello  Updated to use new Tracer utilities for scripts.
SimBlockForm.cgi  1.4  13 years  parrello  Changed to sort genome IDs by group.
SimBlockPattern.cgi  1.4  14 years  parrello  Updated to use new Tracer utilities for scripts.
SimPieces.cgi  1.2  14 years  parrello  Updated to display the block name instead of the ID in the piece list.
SproutGet.cgi  1.7  14 years  parrello  Updated to use new Tracer utilities for scripts.
SproutScript.cgi  1.11  14 years  parrello  Converted to allow specification of a subsystem for which a subsystem object wou...
SproutTest.cgi  1.9  14 years  olson  add license words
TestForms.cgi  1.3  14 years  parrello  Enhanced to get a list of FIG tables and put them in the new FIG query form.
add_links.cgi  1.2  14 years  olson  add license words
align_DNA.cgi  1.5  14 years  olson  add license words
array2sub.cgi  1.14  14 years  olson  add license words
assign_using_tree.cgi  1.6  14 years  overbeek  fixes to assign_using
assignments.cgi  1.15  14 years  olson  add license words
att2sub.cgi  1.6  14 years  olson  add license words
check_anno.cgi  1.2  13 years  overbeek  fix numbers on chedck_anno.cgi
check_int_anno.cgi  1.3  13 years  overbeek  $/ fixes
check_subsys.cgi  1.11  14 years  overbeek  fixes to deleted_features, replace_features_with, etc
chromosomal_clusters.cgi  1.59  14 years  overbeek  RAE:Adding boxes to paste ids in if nothing is provided
cluster_service.cgi  1.4  14 years  olson  add license words
cluster_stage.cgi  1.4  14 years  olson  add license words
cluster_xmlrpc.cgi  1.2  14 years  olson  add license words
conflicted_pegs.cgi  1.2  14 years  olson  add license words
consistent_sets.cgi  1.3  14 years  olson  add license words
construct.cgi  1.3  14 years  olson  add license words
correspondence.cgi  1.2  14 years  olson  add license words
cv.cgi  1.16  14 years  olson  add license words
das.cgi  1.15  14 years  olson  add license words
display_subsys.cgi  1.11  14 years  parrello  Fixed so that Sprout is used for the data when SPROUT=1 is specified in the URL....
extend_subsys.cgi  1.11  14 years  olson  add license words
feature.cgi  1.6  14 years  olson  add license words
fid_checked.cgi  1.34  14 years  olson  add license words
fusions.cgi  1.2  14 years  olson  add license words
genome_statistics.cgi  1.39  13 years  disz  sorted table by taxonomy
genomebrowser.cgi  1.6  14 years  olson  add license words
get_map_image.cgi  1.4  14 years  olson  add license words
header  1.1.1.1  16 years  efrank   import
homologs_in_clusters.cgi  1.9  14 years  olson  add license words
index.cgi  1.101  13 years  overbeek  RAE: Swtiched to using SQL Count for the number of contigs
kernel.cgi  1.15  14 years  olson  add license words
kernel_xmlrpc.cgi  1.11  14 years  efrank   'by_raw_alias' => $wrapper->wrap_array_return("by_raw_alias"), 'fin...
legionella_v1.cgi  1.1  13 years  mkubal  tool for legionella ma analysis
local_sim_compute.cgi  1.3  14 years  olson  more fixes to sim compute stuff.
ma2sub.cgi  1.6  14 years  olson  add license words
ma_to_tf.cgi  1.1  14 years  mkubal  new
ma_to_tf_nr.cgi  1.2  13 years  mkubal  with gene table
ma_to_tf_single.cgi  1.1  14 years  mkubal  new
myseed.cgi  1.2  14 years  olson  add license words
organisms.cgi  1.29  14 years  overbeek  RAE: Additions suggested by Sveta
p2p_service.cgi  1.2  14 years  olson  add license words
paint_network.cgi  1.1  14 years  mkubal  for painting ma,flux results, complete genome hybridization exp
pathway.cgi  1.2  14 years  olson  add license words
pir.cgi  1.33  14 years  olson  add license words
pom.cgi  1.19  13 years  overbeek  RAE: Updating POM with new entry page
propose_new_peg.cgi  1.8  14 years  golsen  Fix the endpont of new coding sequences to include the stop codon (when possible...
protein.cgi  1.187  13 years  efrank   # caBIG insists on explicitly displaying the taxon ID rather ...
protein_by_ss.cgi  1.4  14 years  olson  add license words
protein_info.cgi  1.10  14 years  olson  add license words
protein_new.cgi  1.2  14 years  olson  add license words
protein_sets.cgi  1.4  14 years  olson  add license words
protein_sets_2.cgi  1.2  14 years  olson  add license words
protein_sets_by_alias.cgi  1.2  14 years  olson  add license words
proteinfamilies.cgi  1.47  13 years  overbeek  RAE: Changes to Protein Families
rae.cgi  1.4  14 years  olson  add license words
record.cgi  1.4  14 years  olson  add license words
reset_curator.cgi  1.2  14 years  olson  add license words
scopmap_service.cgi  1.4  14 years  olson  add license words
sdk_uniprot_search.cgi  1.7  13 years  mkubal  Gene now Gene Name or Symbol
seed_ctl.cgi  1.10  14 years  olson  add license words
seed_running_perl.fragment  1.1  15 years  olson  Fragment of perl code to be inserted between tool_hdr and actual script of CGI; ...
server_check.cgi  1.3  14 years  olson  add license words
set_variants.cgi  1.3  14 years  olson  add license words
show_kegg_map.cgi  1.3  14 years  olson  add license words
show_local_map.cgi  1.4  14 years  olson  add license words
show_map.cgi  1.3  14 years  olson  add license words
sigs.cgi  1.15  13 years  overbeek  fixes to sigs.cgi for Leslie
ss_export.cgi  1.8  14 years  olson  add license words
ss_scoreboard.cgi  1.9  14 years  olson  add license words
ssa.cgi  1.32  14 years  olson  add license words
ssa2.cgi  1.50  14 years  olson  add license words
start.cgi  1.8  14 years  olson  add license words
status_of_model.cgi  1.5  14 years  olson  add license words
subsys.cgi  1.143  14 years  olson  add explicit path setting
subsys_diagram.cgi  1.7  14 years  olson  add license words
subsys_hope.cgi  1.2  14 years  olson  add license words
subsys_summary.cgi  1.25  14 years  olson  add license words
subsys_vectors.cgi  1.12  14 years  olson  add license words
testGetControlledVocabularyAnnotationsForPegServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetFigIdsForUniprotKbPrimaryAccessionServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetFunctionalRolesByUniprotkbPrimaryAccessionServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetGeneForPegServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetOrganismCollectionServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetOrganismsInSubsystemServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetPegsForControlledVocabularyAnnotationServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetPegsForEnsemblgeneIDServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetPegsForOrganismServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetPegsInNeighborhoodServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetPegsInSubsystemCellServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetSubsystemCollectionServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetSubsystemsHavingOrganismServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
testGetUniprotKbPrimaryAccessionsForFigIdServer.cgi  1.1  13 years  efrank   server side for caBIG related regression tests.
users.cgi  1.2  14 years  olson  add license words
vert_text.cgi  1.2  14 years  olson  add license words

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