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Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 21 21:39:32 2005 UTC (14 years, 10 months ago) by golsen
Branch: MAIN
CVS Tags: HEAD, Root-bobdev_news, caBIG-00-00-00, caBIG-05Apr06-00, caBIG-13Feb06-00, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3, myrast_33, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Branch point for: Branch-bobdev_news
Changes since 1.3: +199 -160 lines
Diff to previous 1.3
Add options to Similarities to override Max expand when asking for FIG IDs.
It gets annoying to have to constantly increase the value, and it is not
predictable how many sims will need to be expanded to get any desired
number of FIG IDs.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 20 22:26:16 2005 UTC (14 years, 10 months ago) by golsen
Branch: MAIN
Changes since 1.2: +75 -57 lines
Diff to previous 1.2
When sorting similarities by percent identity or bit score per position,
include a penalty for very sort sequences, so that they do not randomly
appear much higher in the similaries list than they should.  The current
treatment for this is roughly a two standard deviation penalty.

The original behavior is still available as non-star versions.
The "help" information has been updated (and other aspects clarified
as well).

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 11 01:04:32 2005 UTC (14 years, 10 months ago) by golsen
Branch: MAIN
Changes since 1.1: +61 -44 lines
Diff to previous 1.1
Many new options for similarities

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 10 18:53:52 2005 UTC (14 years, 10 months ago) by golsen
Branch: MAIN
Expanations of the Similarities optons

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

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