[Bio] / FigWebPages / ask_sequences.html Repository:
ViewVC logotype

View of /FigWebPages/ask_sequences.html

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.1 - (download) (as text) (annotate)
Thu May 14 14:53:09 2009 UTC (10 years, 5 months ago) by dsouza
Branch: MAIN
CVS Tags: rast_rel_2009_05_18, rast_rel_2014_0912, rast_rel_2010_0928, rast_rel_2009_0925, rast_rel_2010_0827, rast_rel_2014_0729, rast_rel_2009_07_09, myrast_33, rast_rel_2011_0928, rast_rel_2010_0526, rast_rel_2010_1206, rast_rel_2010_0118, rast_rel_2011_0119, HEAD
Supplementary material for Evolutionary Cohesion Group Analysis of Aspartokinase paper with Roy Jensen

<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html><head>
<meta http-equiv="content-type" content="text/html; charset=ISO-8859-1">

    <title>Cohesion Group Sequences</title>
    

    <link rel="stylesheet" type="text/css" href="ask_TabView.css">
    
    <link rel="stylesheet" type="text/css" href="ask_default.css">
    
    <link rel="stylesheet" type="text/css" href="ask_commonviewer.css">
    
    <link rel="stylesheet" type="text/css" href="ask_seedviewer.css">
    
   
    <script type="text/javascript" src="ask_TabView.js"></script>
    
    <script type="text/javascript" src="ask_fade.js"></script>
    
    <script type="text/javascript" src="ask_FilterSelect.js"></script>
    
    <meta name="HTML_PATH" content="./Html">
    
    <meta name="robots" content="noindex,nofollow">
    
</head>
<body>

<div id="header">
  <span id="logo">
  <a href="http://www.theseed.org/"><img src="ask_seed-logo-green.png" alt="The SEED" height="95"></a>
  </span>
  <p>
  <span id="title">
  <a href="http://www.theseed.org/"><img src="ask_seed-theseed-title.png" alt="The SEED Viewer"></a>
  </span>
  </p>
  <p>Cohesion-Group Approach for Evolutionary Analysis of Aspartokinase</p>
</div>

<div id="topbar">
  <table style="width: 100%; border-spacing: 0px;">
    <tbody><tr>
      <td style="padding: 0px; width: 100%;">
	
	  <div id="menu">
	<ul id="nav">

		<li><div><a href="ask_tables.html">&raquo;Tables</a></div>
		<ul>
			<li><a href="ask_dynamic.html">Dynamic table with all sequences</a></li>
			<li><a href="ask_representatives.html">Representative sequences</a></li>
		</ul>
		</li>

		<li><div><a href="ask_trees.html">&raquo;Trees</a></div>
		<ul>
			<li><a href="ask_big_tree.nwk">All Sequences (Newick)</a></li>
			<li><a href="ask_big_tree.pdf">All Sequences (PDF)</a></li>
			<li><a href="ask_big_tree.nwk">Cohesion Group Representatives (Newick)</a></li>
			<li><a href="ask_representatives.pdf">Cohesion Group Representatives (PDF)</a></li>
			<li><a href="ask_representatives.nwk">Indel group &#945; (Newick)</a></li>
			<li><a href="ask_alpha_tree.pdf">Indel group &#945; (PDF)</a></li>
			<li><a href="ask_beta.nwk">Indel group &#946; (Newick)</a></li>
			<li><a href="ask_beta_tree.pdf">Indel group &#946; (PDF)</a></li>
		</ul>

		</li>
		<li><div><a href="ask_sequences.html">&raquo;Sequences</a></div>
		</li>

		<li><div><a href="ask_links.html">&raquo;Links</a></div>
		<ul>
			<li><a href="http://www.theseed.org/wiki/Main_Page">The SEED</a></li>
			<li><a href="http://aropath.lanl.gov/">AroPath</a></li>
		</ul>
		</li>

      </td>
    </tr>
  </tbody></table>
</div>

<div id="content">
    <div style="margin: 20px; font-size: 13px; text-align: justify; width: 70%;">

		<div><h4>&raquo; Sequence Files</h4></div>
		<ul>

                        <li>All sequences:&nbsp;&nbsp;<a href="ask_cg_all.fasta">fasta</a></li>
                        <li>Cohesion Group Representatives:&nbsp;&nbsp;<a href="ask_cg_representatives.fasta">fasta</a></li>
		</ul>

		<ul>
                        <li>Cohesion Group 1:&nbsp;&nbsp;<a href="ask_CG01.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG01.aln">aln</a></li>
                        <li>Cohesion Group 2:&nbsp;&nbsp;<a href="ask_CG02.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG02.aln">aln</a></li>
                        <li>Cohesion Group 3:&nbsp;&nbsp;<a href="ask_CG03.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG03.aln">aln</a></li>
                        <li>Cohesion Group 4:&nbsp;&nbsp;<a href="ask_CG04.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG04.aln">aln</a></li>
                        <li>Cohesion Group 5:&nbsp;&nbsp;<a href="ask_CG05.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG05.aln">aln</a></li>
                        <li>Cohesion Group 6:&nbsp;&nbsp;<a href="ask_CG06.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG06.aln">aln</a></li>
                        <li>Cohesion Group 7:&nbsp;&nbsp;<a href="ask_CG07.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG07.aln">aln</a></li>
                        <li>Cohesion Group 8:&nbsp;&nbsp;<a href="ask_CG08.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG08.aln">aln</a></li>
                        <li>Cohesion Group 9:&nbsp;&nbsp;<a href="ask_CG09.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG09.aln">aln</a></li>
                        <li>Cohesion Group 10:&nbsp;&nbsp;<a href="ask_CG10.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG10.aln">aln</a></li>
                        <li>Cohesion Group 11:&nbsp;&nbsp;<a href="ask_CG11.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG11.aln">aln</a></li>
                        <li>Cohesion Group 12:&nbsp;&nbsp;<a href="ask_CG12.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG12.aln">aln</a></li>
                        <li>Cohesion Group 13:&nbsp;&nbsp;<a href="ask_CG13.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG13.aln">aln</a></li>
                        <li>Cohesion Group 14:&nbsp;&nbsp;<a href="ask_CG14.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG14.aln">aln</a></li>
                        <li>Cohesion Group 15:&nbsp;&nbsp;<a href="ask_CG15.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG15.aln">aln</a></li>
                        <li>Cohesion Group 16:&nbsp;&nbsp;<a href="ask_CG16.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG16.aln">aln</a></li>
                        <li>Cohesion Group 17:&nbsp;&nbsp;<a href="ask_CG17.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG17.aln">aln</a></li>
                        <li>Cohesion Group 18:&nbsp;&nbsp;<a href="ask_CG18.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG18.aln">aln</a></li>
                        <li>Cohesion Group 19:&nbsp;&nbsp;<a href="ask_CG19.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG19.aln">aln</a></li>
                        <li>Cohesion Group 20:&nbsp;&nbsp;<a href="ask_CG20.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG20.aln">aln</a></li>
                        <li>Cohesion Group 21:&nbsp;&nbsp;<a href="ask_CG21.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG21.aln">aln</a></li>
                        <li>Cohesion Group 22:&nbsp;&nbsp;<a href="ask_CG22.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG22.aln">aln</a></li>
                        <li>Cohesion Group 23:&nbsp;&nbsp;<a href="ask_CG23.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG23.aln">aln</a></li>
                        <li>Cohesion Group 24:&nbsp;&nbsp;<a href="ask_CG24.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG24.aln">aln</a></li>
                        <li>Cohesion Group 25:&nbsp;&nbsp;<a href="ask_CG25.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG25.aln">aln</a></li>
                        <li>Cohesion Group 26:&nbsp;&nbsp;<a href="ask_CG26.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG26.aln">aln</a></li>
                        <li>Cohesion Group 27:&nbsp;&nbsp;<a href="ask_CG27.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG27.aln">aln</a></li>
                        <li>Cohesion Group 28:&nbsp;&nbsp;<a href="ask_CG28.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG28.aln">aln</a></li>
                        <li>Cohesion Group 29:&nbsp;&nbsp;<a href="ask_CG29.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG29.aln">aln</a></li>
                        <li>Cohesion Group 30:&nbsp;&nbsp;<a href="ask_CG30.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG30.aln">aln</a></li>
                        <li>Cohesion Group 31:&nbsp;&nbsp;<a href="ask_CG31.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG31.aln">aln</a></li>
                        <li>Cohesion Group 32:&nbsp;&nbsp;<a href="ask_CG32.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG32.aln">aln</a></li>
                        <li>Cohesion Group 33:&nbsp;&nbsp;<a href="ask_CG33.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG33.aln">aln</a></li>
                        <li>Cohesion Group 34:&nbsp;&nbsp;<a href="ask_CG34.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG34.aln">aln</a></li>
                        <li>Cohesion Group 35:&nbsp;&nbsp;<a href="ask_CG35.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG35.aln">aln</a></li>
                        <li>Cohesion Group 36:&nbsp;&nbsp;<a href="ask_CG36.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG36.aln">aln</a></li>
                        <li>Cohesion Group 37:&nbsp;&nbsp;<a href="ask_CG37.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG37.aln">aln</a></li>
                        <li>Cohesion Group 38:&nbsp;&nbsp;<a href="ask_CG38.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG38.aln">aln</a></li>
                        <li>Cohesion Group 39:&nbsp;&nbsp;<a href="ask_CG39.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG39.aln">aln</a></li>
                        <li>Cohesion Group 40:&nbsp;&nbsp;<a href="ask_CG40.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG40.aln">aln</a></li>
                        <li>Cohesion Group 41:&nbsp;&nbsp;<a href="ask_CG41.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG41.aln">aln</a></li>
                        <li>Cohesion Group 42:&nbsp;&nbsp;<a href="ask_CG42.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG42.aln">aln</a></li>
                        <li>Cohesion Group 43:&nbsp;&nbsp;<a href="ask_CG43.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG43.aln">aln</a></li>
                        <li>Cohesion Group 44:&nbsp;&nbsp;<a href="ask_CG44.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG44.aln">aln</a></li>
                        <li>Cohesion Group 45:&nbsp;&nbsp;<a href="ask_CG45.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG45.aln">aln</a></li>
                        <li>Cohesion Group 46:&nbsp;&nbsp;<a href="ask_CG46.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG46.aln">aln</a></li>
                        <li>Cohesion Group 47:&nbsp;&nbsp;<a href="ask_CG47.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG47.aln">aln</a></li>
                        <li>Cohesion Group 48:&nbsp;&nbsp;<a href="ask_CG48.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG48.aln">aln</a></li>
                        <li>Cohesion Group 49:&nbsp;&nbsp;<a href="ask_CG49.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG49.aln">aln</a></li>
                        <li>Cohesion Group 50:&nbsp;&nbsp;<a href="ask_CG50.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG50.aln">aln</a></li>
                        <li>Cohesion Group 51:&nbsp;&nbsp;<a href="ask_CG51.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG51.aln">aln</a></li>
                        <li>Cohesion Group 52:&nbsp;&nbsp;<a href="ask_CG52.fasta">fasta</a>&nbsp;&nbsp;<a href="ask_CG52.aln">aln</a></li>
                        <li>Orphan sequences:&nbsp;&nbsp;<a href="ask_Orphan.fasta">fasta</a>&nbsp;&nbsp;(listed as Cohesion 'Group' 99 in tables)</li>
		</ul>

</div>
</div>

</body>
</html>

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3