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Revision 1.7 - (download) (as text) (annotate)
Thu Jul 26 20:35:49 2007 UTC (12 years, 2 months ago) by disz
Branch: MAIN
CVS Tags: rast_rel_2014_0912, rast_rel_2008_06_18, rast_rel_2008_06_16, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, rast_rel_2008_09_30, rast_rel_2010_0526, rast_rel_2014_0729, rast_rel_2009_05_18, rast_rel_2009_0925, rast_rel_2010_1206, rast_rel_2010_0118, rast_rel_2009_02_05, rast_rel_2011_0119, rast_rel_2008_12_18, rast_rel_2008_10_09, rast_release_2008_09_29, rast_rel_2008_04_23, rast_rel_2008_08_07, rast_rel_2009_07_09, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, rast_rel_2008_10_29, rast_rel_2009_03_26, rast_rel_2008_11_24, HEAD
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<b><font size="+3" >The SEED: an Annotation/Analysis Tool Provided by <a href="FIG.html">FIG</a></font></b>

<br>
[ <a href="http://subsys.info">Subsystem Forum</a> |
<a href="../eggs.cgi">Essentiality Data</a> |
<a href="tutorials.html">FIG Tutorials</a> |
<a href="../p2p/new_seed_update_page.cgi?user=">Peer-to-peer Updates</a> |
<a href="../p2p/ch.cgi?user=">(New) Clearinghouse</a> |

<a href="../seed_ctl.cgi?user=">SEED Control Panel</a> |
<a href="http://www.nmpdr.org/">NMPDR</a> |
<a href="http://www-unix.mcs.anl.gov/SEEDWiki/">SEED Wiki</a>]
<br>
[<a href="http://www.genomesonline.org/">GOLD</a> |
<a href="CompleteSeedGenomes.html">"Complete" Genomes in SEED </a> |
<a href="http://au.expasy.org/">ExPASy</a> |

<a href="http://img.jgi.doe.gov/">IMG</a> |
<a href="http://www.genome.jp/kegg/kegg2.html">KEGG</a> |
<a href="http://www.ncbi.nlm.nih.gov/">NCBI</a> |
<a href="http://www.tigr.org/tigr-scripts/CMR2/CMRGenomes.spl">TIGR cmr</a> |
<a href="http://www.pir.uniprot.org/">UniProt</a> |
<a href="http://borrelia.ci.uchicago.edu/fogbugz">Report "Bugz"</a>]
<br>
<br>
<a href="../Html/tyrASubsystem.html">TyrA Subsystem Homepage</a>
<br>
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<table border=0 cellpadding=0 cellspacing=0 width=1045 style='border-collapse:
 collapse;table-layout:fixed'>
 <col width=83>
 <col width=261>
 <col width=85>
 <col width=167>
 <col width=100>
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 <col width=53 span=250>
 <tr height=21>
  <td height=21 class=xl24 colspan=4 width=596>Table 1.  Sources &amp;
  properties of representative sequences for TyrA cohesion groups <font
  class=font5> </font></td>
  <td width=100></td>
  <td width=349></td>
 </tr>
 <tr height=16>
  <td height=16 class=xl24></td>
  <td></td>
  <td></td>
  <td></td>
  <td></td>
  <td></td>
 </tr>
 <tr height=36>
  <td height=36 class=xl30 width=83>Cohesion group</td>
  <td class=xl30 width=261>Source of TyrA sequence</td>
  <td class=xl30 width=85>Acronym<font class=font7><sup>a</sup></font></td>
  <td class=xl31 width=167>SEED: fig &amp; peg number</td>
  <td class=xl31 width=100>gi number<font class=font7><sup>b</sup></font></td>
  <td class=xl30 width=349>Taxon placement of non-LGT members<font class=font7><sup>c</sup></font></td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-1     <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Erwinia%20carotovora"><span
  style='font-style:italic'>Erwinia carotovora</span></a></td>
<td class=xl27 width=85>Ecar<a name=Ecar></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C218491.3.peg.2590">fig|218491.3.peg.2590</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=50122273">50122273*</a></td>
  <td class=xl27 width=349>lower-Gammaproteobacteria (4 Orders)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-2     <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pseudomonas%20putida"><span
  style='font-style:italic'>Pseudomonas putida</span></a></td>
<td class=xl27 width=85>Pput<a name=Pput></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C160488.1.peg.1756">fig|160488.1.peg.1756</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=26988501">26988501<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>upper-Gamma_1proteobacteria (Pseudomonadaceae
  Family)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-3     <font class=font14>&#945;</font></td>
  <td class=xl37><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Psychrobacter%20"><span
  style='font-style:italic'>Psychrobacter <font class=font9>sp.</font></span></a></td>
<td class=xl27 width=85>PSYC<a name=PSYC></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259536.4.peg.787">fig|259536.4.peg.787</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71038727">71038727<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>upper-Gamma_2proteobacteria (Moraxellaceae Family)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-4     <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Xanthomonas%20campestris"><span
  style='font-style:italic'>Xanthomonas campestris</span></a></td>
<td class=xl27 width=85>Xcam<a name=Xcam></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C190485.1.peg.1454">fig|190485.1.peg.1454</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21230932">21230932<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>upper-Gamma_3proteobacteria (Xanthomonadaceae
  Family)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-5     <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Alkalilimnicola%20ehrlichei"><span
  style='font-style:italic'>Alkalilimnicola ehrlichei</span></a></td>
<td class=xl27 width=85>Aehr<a name=Aehr></a></td>
  <td class=xl34><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%187272.6.peg.896">fig|187272.6.peg.896</a></td>
  <td class=xl39><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114320089">114320089</a></td>
  <td class=xl27 width=349>upper-Gamma_4proteobacteria (Chromatiales Order)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-6     <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Marinobacter%20aquaeolei"><span
  style='font-style:italic'>Marinobacter aquaeolei</span></a></td>
<td class=xl27 width=85>Maqu<a name=Maqu></a></td>
  <td class=xl42 width=167>NA</td>
  <td class=xl38 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77952716">77952716</a></td>
  <td class=xl27 width=349>upper-Gamma_5proteobacteria (2 Orders)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-7     <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Burkholderia%20xenovorans"><span
  style='font-style:italic'>Burkholderia xenovorans</span></a></td>
<td class=xl27 width=85>Bxen<a name=Bxen></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C36873.1.peg.4890">fig|36873.1.peg.4890</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91784814">91784814<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Beta_1proteobacteria (Burkholderiaceae Family)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-8     <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bordetella%20pertussis"><span
  style='font-style:italic'>Bordetella pertussis</span></a></td>
<td class=xl27 width=85>Bper_1<a name=Bper_1></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C257313.1.peg.827">fig|257313.1.peg.827</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=33592104">33592104<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Beta_2proteobacteria (Alcaligenaceae Family)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-9     <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Neisseria%20gonorrhoeae"><span
  style='font-style:italic'>Neisseria gonorrhoeae</span></a></td>
<td class=xl27 width=85>Ngon<a name=Ngon></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C242231.4.peg.1532">fig|242231.4.peg.1532</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=59801853">59801853<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Beta_3proteobacteria (Neisseriaceae Family)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-10   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Polaromonas%20"><span
  style='font-style:italic'>Polaromonas <font class=font9>sp.</font></span></a></td>
<td class=xl27 width=85>POLA<a name=POLA></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C296591.1.peg.2815">fig|296591.1.peg.2815</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91787673">91787673<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Beta_4proteobacteria (Comamonadaceae Family)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-11   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosomonas%20europaea"><span
  style='font-style:italic'>Nitrosomonas europaea</span></a></td>
<td class=xl27 width=85>Neur<a name=Neur></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C228410.1.peg.323">fig|228410.1.peg.323</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=30248354">30248354<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Beta_5proteobacteria (Nitrosomonadaceae Family)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-12   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bartonella%20henselae"><span
  style='font-style:italic'>Bartonella henselae</span></a></td>
<td class=xl27 width=85>Bhen<a name=Bhen></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C283166.1.peg.1442">fig|283166.1.peg.1442</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=49476273">49476273<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Alpha_1proteobacteria (Most Orders)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-13   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Wolinella%20succinogenes"><span
  style='font-style:italic'>Wolinella succinogenes</span></a></td>
<td class=xl27 width=85>Wsuc<a name=Wsuc></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273121.1.peg.325">fig|273121.1.peg.325</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34482497">34482497<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Flavobacteria Class</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-14   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Geobacter%20%20sulfurreducens"><span
  style='font-style:italic'>Geobacter sulfurreducens</span></a></td>
<td class=xl27 width=85>Gsul<a name=Gsul></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243231.1.peg.2590">fig|243231.1.peg.2590</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=39997701">39997701<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Delta_1proteobacteria (Desulfuromonadales Order)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-15   <font class=font15>&#946;</font></td>
  <td class=xl37><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfovibrio%20%20desulfuricans"><span
  style='font-style:italic'>Desulfovibrio desulfuricans</span></a></td>
<td class=xl27 width=85>Ddes<a name=Ddes></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C207559.3.peg.3693">fig|207559.3.peg.3693</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=78358524">78358524<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Delta_2proteobacteria (Desulfovibrionales Order)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-16   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Synechosystis"
  target="_blank"><span style='font-style:italic'>Synechocystis <font
  class=font9>sp.</font><font class=font13> </font></span></a></td>
<td class=xl27 width=85>SYNE_3<a name=SYNE_3></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1148.1.peg.1391">fig|1148.1.peg.1391</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=16330562">16330562<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Cyanobacteria Phylum</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-17   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermobifida%20%20fusca"><span
  style='font-style:italic'>Thermobifida fusca</span></a></td>
<td class=xl27 width=85>Tfus<a name=Tfus></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C269800.4.peg.764">fig|269800.4.peg.764</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=72161612">72161612<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Actinobacteridae Subclass</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-18   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Lactobacillus%20plantarum"
  target="_blank"><span style='font-style:italic'>Lactobacillus plantarum</span></a></td>
<td class=xl27 width=85>Lpla<a name=Lpla></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C220668.1.peg.1693">fig|220668.1.peg.1693</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=28271503">28271503<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Bacilli Class</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-19   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20difficile"><span
  style='font-style:italic'>Clostridium difficile</span></a></td>
<td class=xl27 width=85>Cdif<a name=Cdif></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1496.1.peg.2965">fig|1496.1.peg.2965</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=115250885">115250885<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Clostridia_1 (Clostridiales Order)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-20   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20thermocellum"><span
  style='font-style:italic'>Clostridium thermocellum</span></a></td>
<td class=xl27 width=85>Cthe_5<a name=Cthe_5></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203119.1.peg.2939">fig|203119.1.peg.2939</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=67874921">67874921<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Clostridia_2 (2 Orders)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-21   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Moorella%20%20thermoacetica"><span
  style='font-style:italic'>Moorella thermoacetica</span></a></td>
<td class=xl27 width=85>Mthe_3<a name=Mthe_3></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C264732.1.peg.2464">fig|264732.1.peg.2464</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=83590180&amp;dopt=GenPept"
  target="_blank">83590180<font class=font10>*</font></a></td>
  <td class=xl27 width=349>Clostridia_3 (2 Orders)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-22   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Deinococcus%20%20radiodurans"><span
  style='font-style:italic'>Deinococcus radiodurans</span></a></td>
<td class=xl27 width=85>Drad<a name=Drad></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243230.1.peg.1305">fig|243230.1.peg.1305</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6458858">6458858<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Deinococci Class</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-23   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bacteroides%20%20thetaiotaomicron"><span
  style='font-style:italic'>Bacteroides thetaiotaomicron</span></a></td>
<td class=xl27 width=85>Bthe_9<a name=Bthe_9></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C226186.1.peg.3931">fig|226186.1.peg.3931</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29341249">29341249<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Bacteroidetes Class</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-24   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chlorobium%20%20tepidum"><span
  style='font-style:italic'>Chlorobium tepidum</span></a></td>
<td class=xl27 width=85>Ctep<a name=Ctep></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C194439.1.peg.84">fig|194439.1.peg.84</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21672925">21672925<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Chlorobia Class</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-25   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Petrotoga%20%20miotherma"><span
  style='font-style:italic'>Petrotoga miotherma</span></a></td>
<td class=xl27 width=85>Pmio<a name=Pmio></a></td>
  <td class=xl41 width=167>NA</td>
  <td class=xl27 width=100>NA</td>
  <td class=xl45>Unresolved phylogenetic mixture</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-26   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Coxiella%20%20burnetii"><span
  style='font-style:italic'>Coxiella burnetii</span></a></td>
<td class=xl27 width=85>Cbur<a name=Cbur></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C227377.1.peg.935">fig|227377.1.peg.935</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29654299">29654299<font
  class=font10>*</font></a></td>
  <td class=xl40>Unresolved phylogenetic mixture</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-27   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodopirellula%20%20baltica"><span
  style='font-style:italic'>Rhodopirellula baltica <font class=font9>(</font><font
  class=font13>Pirellula </font><font class=font9>sp.)</font></span></a></td>
<td class=xl27 width=85>Rbal<a name=Rbal></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243090.1.peg.3009">fig|243090.1.peg.3009</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=32473675">32473675<font
  class=font10>*</font></a></td>
  <td class=xl46>Unresolved phylogenetic mixture</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-28   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Leptospira%20%20interrogans"><span
  style='font-style:italic'>Leptospira interrogans</span></a></td>
<td class=xl27 width=85>Lint_1<a name=Lint_1></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C267671.1.peg.2379">fig|267671.1.peg.2379</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=45658293">45658293<font
  class=font10>*</font></a></td>
  <td class=xl40>Unresolved phylogenetic mixture</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-29  <font class=font16> </font><font
  class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dehalococcoides%20%20ethenogenes"><span
  style='font-style:italic'>Dehalococcoides ethenogenes </span></a></td>
<td class=xl27 width=85>Deth<a name=Deth></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243164.3.peg.722">fig|243164.3.peg.722</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=57234714">57234714<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Chloroflexi Phylum </td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-30   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodospirillum%20rubrum"
  target="_blank"><span style='font-style:italic'>Rhodospirillum rubrum</span></a></td>
<td class=xl27 width=85>2Rrub_1<a name=2Rrub_1></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1085.1.peg.3401">fig|1085.1.peg.3401</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=83592308">83592308<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Alpha_2proteobacteria (2 Orders)</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-31   <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Gemmata%20%20obscuriglobus"><span
  style='font-style:italic'>Gemmata obscuriglobus</span></a></td>
<td class=xl27 width=85>Gobs<a name=Gobs></a></td>
  <td class=xl41 width=167>NA</td>
  <td class=xl27 width=100>NA</td>
  <td class=xl27 width=349>Planctomyceteceae Family</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Acidithiobacillus%20%20ferrooxidans"><span
  style='font-style:italic'>Acidithiobacillus ferrooxidans</span></a></td>
<td class=xl27 width=85>Afer_4<a name=Afer_4></a></td>
  <td class=xl41 width=167>NA</td>
  <td class=xl27 width=100>NA</td>
  <td class=xl27 width=349>upper-Gammaproteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Aquifex%20%20aeolicus"><span
  style='font-style:italic'>Aquifex aeolicus</span></a></td>
<td class=xl27 width=85>Aaeo<a name=Aaeo></a></td>
  <td class=xl36><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224324.1.peg.1217">fig|224324.1.peg.1217</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15606822">15606822<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Aquificae orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Azoarcus%20%20"><span
  style='font-style:italic'>Azoarcus <font class=font9>sp.</font></span></a></td>
<td class=xl27 width=85>AZOA<a name=AZOA></a></td>
  <td class=xl36><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C76114.4.peg.1423">fig|76114.4.peg.1423</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=56475924">56475924<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Betaproteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chromobacterium%20%20violaceum"><span
  style='font-style:italic'>Chromobacterium violaceum</span></a></td>
<td class=xl27 width=85>Cvio<a name=Cvio></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243365.1.peg.3407">fig|243365.1.peg.3407</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34498862">34498862<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Betaproteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dechloromonas%20%20aromatica"><span
  style='font-style:italic'>Dechloromonas aromatica</span></a></td>
<td class=xl27 width=85>Daro<a name=Daro></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C159087.4.peg.933">fig|159087.4.peg.933</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71906873">71906873<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Betaproteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfitobacterium%20%20hafniense"><span
  style='font-style:italic'>Desulfitobacterium hafniense</span></a></td>
<td class=xl27 width=85>Dhaf<a name=Dhaf></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C49338.1.peg.2227">fig|49338.1.peg.2227</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=89334457">89334457<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Clostridia<font class=font6> </font><font
  class=font5>orphan</font></td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Magnetococcus%20%20"><span
  style='font-style:italic'>Magnetococcus <font class=font9>sp.</font></span></a></td>
<td class=xl27 width=85>MAGN_1<a name=MAGN_1></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C156889.1.peg.1669">fig|156889.1.peg.1669</a></td>
  <td class=xl40>NA</td>
  <td class=xl27 width=349>Unclassified Proteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylobacillus%20%20flagellatus"><span
  style='font-style:italic'>Methylobacillus flagellatus</span></a></td>
<td class=xl27 width=85>Mfla_5<a name=Mfla_5></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C265072.1.peg.206">fig|265072.1.peg.206</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91775427">91775427<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Betaproteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylococcus%20%20capsulatus"><span
  style='font-style:italic'>Methylococcus capsulatus</span></a></td>
<td class=xl27 width=85>Mcap_1<a name=Mcap_1></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243233.4.peg.782">fig|243233.4.peg.782</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=53804254">53804254<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>upper-Gamma Proteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Microbulbifer%20%20degradans"><span
  style='font-style:italic'>Microbulbifer degradans</span></a></td>
<td class=xl27 width=85>Mdeg<a name=Mdeg></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203122.1.peg.1111">fig|203122.1.peg.1111</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=90021791">90021791<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>upper-Gamma Proteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosococcus%20%20oceani"><span
  style='font-style:italic'>Nitrosococcus oceani</span></a></td>
<td class=xl27 width=85>Noce<a name=Noce></a></td>
  <td class=xl36><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C323261.3.peg.7">fig|323261.3.peg.7</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77163714">77163714<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>upper-Gamma Proteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pelagibacter%20%20ubique"><span
  style='font-style:italic'>Pelagibacter ubique<font class=font11><sup>d</sup></font></span></a></td>
<td class=xl27 width=85>Pubi<a name=Pubi></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C335992.3.peg.1115">fig|335992.3.peg.1115</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71082920">71082920<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Alphaproteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl37><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Symbiobacterium%20%20thermophilum"><span
  style='font-style:italic'>Symbiobacterium thermophilum</span></a></td>
<td class=xl27 width=85>Sthe<a name=Sthe></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292459.1.peg.1361">fig|292459.1.peg.1361</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=51856245">51856245<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Firmicutes orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophobacter%20%20fumaroxidans"><span
  style='font-style:italic'>Syntrophobacter fumaroxidans</span></a></td>
<td class=xl27 width=85>Sfum_1<a name=Sfum_1></a></td>
  <td class=xl36><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%335543.6.peg.3883">fig|335543.6.peg.3883</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71548230">71548230<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Syntrophobacterales<font class=font6> </font><font
  class=font5>orphan</font></td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophomonas%20%20wolfei"><span
  style='font-style:italic'>Syntrophomonas wolfei</span></a></td>
<td class=xl27 width=85>Swol_1<a name=Swol_1></a></td>
  <td class=xl42 width=167>NA</td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114566874">114566874<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Clostridia orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermodesulfobacterium%20%20commune"><span
  style='font-style:italic'>Thermodesulfobacterium commune</span></a></td>
<td class=xl27 width=85>Tcom<a name=Tcom></a></td>
  <td class=xl41 width=167>NA</td>
  <td class=xl27 width=100>NA</td>
  <td class=xl27 width=349>Thermodesulfobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermotoga%20%20maritima"><span
  style='font-style:italic'>Thermotoga maritima</span></a></td>
<td class=xl27 width=85>Tmar<a name=Tmar></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243274.1.peg.339">fig|243274.1.peg.339</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15643112">15643112<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Thermotogae orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thiobacillus%20%20denitrificans"><span
  style='font-style:italic'>Thiobacillus denitrificans</span></a></td>
<td class=xl27 width=85>Tden<a name=Tden></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292415.3.peg.543">fig|292415.3.peg.543</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=74316971">74316971<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Betaproteobacteria orphan</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-80   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanococcoides%20%20burtonii"><span
  style='font-style:italic'>Methanococcoides burtonii</span></a></td>
<td class=xl27 width=85>Mbur<a name=Mbur></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259564.1.peg.2246">fig|259564.1.peg.2246</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91773934">91773934<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Euryarchaea Phylum</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-81   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Haloarcula%20%20marismortui"><span
  style='font-style:italic'>Haloarcula marismortui</span></a></td>
<td class=xl27 width=85>Hmar_2<a name=Hmar_2></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C272569.1.peg.498">fig|272569.1.peg.498</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=55377389">55377389<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Halobacteria Class </td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-82   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Ferroplasma%20%20acidarmanus"><span
  style='font-style:italic'>Ferroplasma acidarmanus</span></a></td>
<td class=xl27 width=85>Faci_1<a name=Faci_1></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C97393.1.peg.324">fig|97393.1.peg.324</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=68141176">68141176<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Thermoplasmata Class</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-83   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanospirillum%20%20hungatei"><span
  style='font-style:italic'>Methanospirillum hungatei</span></a></td>
<td class=xl27 width=85>Mhun<a name=Mhun></a></td>
  <td class=xl36><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%323259.5.peg.1087">fig|323259.5.peg.1087</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=88602324">88602324<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Methanomicrobia Class</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-84   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Sulfolobus%20%20solfataricus"><span
  style='font-style:italic'>Sulfolobus solfataricus</span></a></td>
<td class=xl27 width=85>Ssol<a name=Ssol></a></td>
  <td class=xl43 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273057.1.peg.273">fig|273057.1.peg.273</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15897245">15897245<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Sulfolobales Order</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-85   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pyrobaculum%20%20aerophilum"><span
  style='font-style:italic'>Pyrobaculum aerophilum</span></a></td>
<td class=xl27 width=85>Paer_2<a name=Paer_2></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C178306.1.peg.1339">fig|178306.1.peg.1339</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=18312982">18312982<font
  class=font10>*</font></a></td>
  <td class=xl45>Unresolved phylogenetic mixture</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-86   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Archaeoglobus%20%20fulgidus"><span
  style='font-style:italic'>Archaeoglobus fulgidus</span></a></td>
<td class=xl27 width=85>Aful_1<a name=Aful_1></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224325.1.peg.224">fig|224325.1.peg.224</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=11497843">11497843<font
  class=font10>*</font></a></td>
  <td class=xl40>Unresolved phylogenetic mixture</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-95   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Arabidopsis%20%20thaliana"><span
  style='font-style:italic'>Arabidopsis thaliana</span></a></td>
<td class=xl27 width=85>1Atha<a name=1Atha></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C3702.1.peg.1877">fig|3702.1.peg.1877</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15218283">15218283<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Viridiplantae Kingdom</td>
 </tr>
 <tr height=21>
  <td height=21 class=xl25 width=83>TyrCG-98   <font class=font15>&#946;</font></td>
  <td class=xl35 width=261><a
  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Saccharomyces%20%20cerevisiae"><span
  style='font-style:italic'>Saccharomyces cerevisiae</span></a></td>
<td class=xl27 width=85>Scer<a name=Scer></a></td>
  <td class=xl26 width=167><a
  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C4932.3.peg.431">fig|4932.3.peg.431</a></td>
  <td class=xl26 width=100><a
  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6319643">6319643<font
  class=font10>*</font></a></td>
  <td class=xl27 width=349>Fungi Kingdom</td>
 </tr>
 <tr height=21>
  <td colspan=5 height=21 class=xl55>&#945;<font class=font5> for cohesion
  groups that belong to the TyrA&#945; sub-homology group as shown in the TyrA CG tree.</font></td>
  <td class=xl47 width=120><a
  href="../Html/tyrACGTree.html"><span
  style='text-decoration:underline;text-underline-style:single'>TyrA tree</span></a></td>
  <td class=xl44 width=349></td>
 </tr>
 <tr height=21>
  <td colspan=5 height=21> <font class=font15>&#946;</font><font class=font9> </font><font
  class=font5>for cohesion groups that belong to the TyrA&#946; sub-homology
  group as shown in the </font><font class=font9> </font><font class=font5>TyrA CG tree.</font></td>
  <td class=xl48><a
  href="../Html/tyrACGTree.html"><span
  style='text-decoration:underline;text-underline-style:single'>TyrA tree</span></a></td>
  <td></td>
 </tr>
 <tr height=21>
  <td colspan=4 height=21 class=xl55></td>
  <td></td>
  <td></td>
 </tr>
 <tr class=xl32 height=21>
  <td colspan=6 height=21 class=xl51><sup>a</sup><font class=font5>Organism
  acronyms consist of four letters:  the first letter of the genus name
  followed by the first three letters of the species name.  Any
  underscore-number designations that follow the acronym  

  proper are used to  distinguish
  potential ambiguities,  multiple TyrA species  in a single  organism are 
  distinguished by numbers  preceding the acronym  (as implemented at 
  <a href="http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html">
     AroPath</a>).
</font></td> </tr>
 <tr height=21>
  <td height=21 class=xl29></td>
  <td class=xl34></td>
  <td class=xl34></td>
  <td class=xl34></td>
  <td></td>
  <td></td>
 </tr>
 <tr height=21>
  <td colspan=5 height=21 class=xl50><sup>b</sup><font class=font5>Gene
  identification number. A red asterisk indicates that sequencing of the genome
  is essentially complete.</font></td>
  <td></td>
 </tr>
 <tr height=21>
  <td height=21 class=xl28><sup></sup></td>
  <td></td>
  <td></td>
  <td></td>
  <td></td>
  <td></td>
 </tr>
 <tr height=21>
  <td colspan=6 height=21 class=xl51><sup>c</sup><font class=font5>An  attempt 
  is made to describe each  cohesion group at the hierarchical  level at which
  all organisms  having the sequence  occupy the same taxon.      NCBI’s
  taxonomy  page is used as a 

  resource for this.  Typically,
  cohesion groups gather at about the level of Family or Class,  but wide
  deviations occur in either direction (see text).    In our treatment,
  Gammaptoteobacteria 
  are clearly divided into two groups, 
  with  lower-Gammaproteobacteria and upper-Gammaproteobacteria 
  being the equivalent of "Superorder" taxon designation.   Thus, for example, the
  Betaproteobacteria  (a formal class)
  partition into five cohesion groups which do not correspond to formal taxon
  subdivisions.  The organism names and gi numbers are hyper-linked to the
  Taxonomy Browser at NCBI, the fig/peg
  numbers are hyperlinked to Protein Pages at the SEED.
 </font></td> </tr>
 <tr height=21>
  <td height=21 class=xl33></td>
  <td></td>
  <td></td>
  <td></td>
  <td></td>
  <td></td>
 </tr>
 <tr height=21>
  <td colspan=6 height=21 class=xl50><sup>d</sup><font class=font8>Pelagibacter
  ubique</font><font class=font5> is labeled as Candidatus </font><font
  class=font8>Pelagibacter ubique</font><font class=font5> in many databases. 
  (“Candidatus” refers to an organism that cannot be maintained in a culture
  collection.)  </font></td>
 </tr>
</table>

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