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link="#0000d4" vlink=purple> <center> <table  cellspacing=2> <tr> <td bgcolor="lightblue"> <b><font size="+3" >The SEED: an Annotation/Analysis Tool Provided by <a href="FIG.html">FIG</a></font></b> <br> [ <a href="http://subsys.info">Subsystem Forum</a> | <a href="../eggs.cgi">Essentiality Data</a> | <a href="tutorials.html">FIG Tutorials</a> | <a href="../p2p/new_seed_update_page.cgi?user=">Peer-to-peer Updates</a> | <a href="../p2p/ch.cgi?user=">(New) Clearinghouse</a> | <a href="../seed_ctl.cgi?user=">SEED Control Panel</a> | <a href="http://www.nmpdr.org/">NMPDR</a> | <a href="http://www-unix.mcs.anl.gov/SEEDWiki/">SEED Wiki</a>] <br> [<a href="http://www.genomesonline.org/">GOLD</a> | <a href="CompleteSeedGenomes.html">"Complete" Genomes in SEED </a> | <a href="http://au.expasy.org/">ExPASy</a> | <a href="http://img.jgi.doe.gov/">IMG</a> | <a href="http://www.genome.jp/kegg/kegg2.html">KEGG</a> | <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a> | <a href="http://www.tigr.org/tigr-scripts/CMR2/CMRGenomes.spl">TIGR cmr</a> | <a href="http://www.pir.uniprot.org/">UniProt</a> | <a href="http://borrelia.ci.uchicago.edu/fogbugz">Report "Bugz"</a>] <br> <br> <td> <img src=seed-logo-green.png alt=seedlogo> </td> </tr> </table> </center> <center> <table border=0 cellpadding=0 cellspacing=0 width=1316 style='border-collapse: collapse;table-layout:fixed'> <col width=140> <col width=257> <col width=140> <col width=195> <col width=114> <col width=470> <col width=53 span=250> <tr height=21>  <td height=21 class=xl24 colspan=2 width=397>Table 1.  Representative TyrA  sequences for 58 cohesion groups  <font class=font5> </font></td>  <td width=140></td>  <td width=195></td>  <td width=114></td>  <td width=470></td> </tr> <tr height=16>  <td height=16 class=xl24></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=36>  <td height=36 class=xl31 width=140>Cohesion group</td>  <td class=xl31 width=257>Source of TyrA sequence</td>  <td class=xl31 width=140>Acronym<font class=font7><sup>a</sup></font></td>  <td class=xl32 width=195>SEED: fig &amp; peg number</td>  <td class=xl32 width=114>gi number<font class=font7><sup>b</sup></font></td>  <td class=xl31 width=470>Taxon group<font class=font7><sup>c</sup></font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-1</td>  <td class=xl37 width=257><a name=Ecar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Erwinia%20carotovora"><span  style='font-style:italic'>Erwinia carotovora</span></a></td>  <td class=xl27 width=140>Ecar</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C218491.3.peg.2590">fig|218491.3.peg.2590</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=50122273">50122273*</a></td>  <td class=xl27 width=470>lower-Gammaproteobacteria (“class”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-2</td>  <td class=xl37 width=257><a name=Pput  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pseudomonas%20putida"><span  style='font-style:italic'>Pseudomonas putida</span></a></td>  <td class=xl27 width=140>Pput</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C160488.1.peg.1756">fig|160488.1.peg.1756</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=26988501">26988501<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-3</td>  <td class=xl39><a name=PSYC  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Psychrobacter%20"><span  style='font-style:italic'>Psychrobacter <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>PSYC</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259536.4.peg.787">fig|259536.4.peg.787</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71038727">71038727<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-4</td>  <td class=xl37 width=257><a name=Xcam  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Xanthomonas%20campestris"><span  style='font-style:italic'>Xanthomonas campestris</span></a></td>  <td class=xl27 width=140>Xcam</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C190485.1.peg.1454">fig|190485.1.peg.1454</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21230932">21230932<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_3proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-5</td>  <td class=xl37 width=257><a name=Aehr  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Alkalilimnicola%20ehrlichei"><span  style='font-style:italic'>Alkalilimnicola ehrlichei</span></a></td>  <td class=xl27 width=140>Aehr</td>  <td class=xl43 width=195>NA</td>  <td class=xl41><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114320089">114320089</a></td>  <td class=xl27 width=470>upper-Gamma_4proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-6</td>  <td class=xl37 width=257><a name=Maqu  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Marinobacter%20aquaeolei"><span  style='font-style:italic'>Marinobacter aquaeolei</span></a></td>  <td class=xl27 width=140>Maqu</td>  <td class=xl43 width=195>NA</td>  <td class=xl40 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77952716">77952716</a></td>  <td class=xl27 width=470>upper-Gamma_5proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-7</td>  <td class=xl37 width=257><a name=Bxen  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Burkholderia%20xenovorans"><span  style='font-style:italic'>Burkholderia xenovorans</span></a></td>  <td class=xl27 width=140>Bxen</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C36873.1.peg.4890">fig|36873.1.peg.4890</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91784814">91784814<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-8</td>  <td class=xl37 width=257><a name=Bper_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bordetella%20pertussis"><span  style='font-style:italic'>Bordetella pertussis</span></a></td>  <td class=xl27 width=140>Bper_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C257313.1.peg.827">fig|257313.1.peg.827</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=33592104">33592104<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-9</td>  <td class=xl37 width=257><a name=Ngon  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Neisseria%20gonorrhoeae"><span  style='font-style:italic'>Neisseria gonorrhoeae</span></a></td>  <td class=xl27 width=140>Ngon</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C242231.4.peg.1532">fig|242231.4.peg.1532</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=59801853">59801853<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_3proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-10</td>  <td class=xl37 width=257><a name=POLA  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Polaromonas%20"><span  style='font-style:italic'>Polaromonas <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>POLA</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C296591.1.peg.2815">fig|296591.1.peg.2815</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91787673">91787673<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_4proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-11</td>  <td class=xl37 width=257><a name=Neur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosomonas%20europaea"><span  style='font-style:italic'>Nitrosomonas europaea</span></a></td>  <td class=xl27 width=140>Neur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C228410.1.peg.323">fig|228410.1.peg.323</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=30248354">30248354<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_5proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-12</td>  <td class=xl37 width=257><a name=Bhen  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bartonella%20henselae"><span  style='font-style:italic'>Bartonella henselae</span></a></td>  <td class=xl27 width=140>Bhen</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C283166.1.peg.1442">fig|283166.1.peg.1442</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=49476273">49476273<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alpha_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-13</td>  <td class=xl37 width=257><a name=Wsuc  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Wolinella%20succinogenes"><span  style='font-style:italic'>Wolinella succinogenes</span></a></td>  <td class=xl27 width=140>Wsuc</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273121.1.peg.325">fig|273121.1.peg.325</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34482497">34482497<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Epsilonproteobacteria (Class)/Flavobacteria (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-14</td>  <td class=xl37 width=257><a name=Gsul  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Geobacter%20%20sulfurreducens"><span  style='font-style:italic'>Geobacter sulfurreducens</span></a></td>  <td class=xl27 width=140>Gsul</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243231.1.peg.2590">fig|243231.1.peg.2590</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=39997701">39997701<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Desulfuromonadales (Order)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-15</td>  <td class=xl39><a name=Ddes  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfovibrio%20%20desulfuricans"><span  style='font-style:italic'>Desulfovibrio desulfuricans</span></a></td>  <td class=xl27 width=140>Ddes</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C207559.3.peg.3693">fig|207559.3.peg.3693</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=78358524">78358524<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Desulfovibrionales (Order)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-16</td>  <td class=xl37 width=257><a name=SYNE_3  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Synechosystis"  target="_blank"><span style='font-style:italic'>Synechocystis <font  class=font9>sp.</font><font class=font13> </font></span></a></td>  <td class=xl27 width=140>SYNE_3</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1148.1.peg.1391">fig|1148.1.peg.1391</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=16330562">16330562<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Cyanobacteria (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-17</td>  <td class=xl37 width=257><a name=Tfus  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermobifida%20%20fusca"><span  style='font-style:italic'>Thermobifida fusca</span></a></td>  <td class=xl27 width=140>Tfus</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C269800.4.peg.764">fig|269800.4.peg.764</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=72161612">72161612<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Actinobacteridae (Subclass)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-18</td>  <td class=xl37 width=257><a name=Lpla  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Lactobacillus%20plantarum"  target="_blank"><span style='font-style:italic'>Lactobacillus plantarum</span></a></td>  <td class=xl27 width=140>Lpla</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C220668.1.peg.1693">fig|220668.1.peg.1693</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=28271503">28271503<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Bacilli (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-19</td>  <td class=xl37 width=257><a name=Cdif  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20difficile"><span  style='font-style:italic'>Clostridium difficile</span></a></td>  <td class=xl27 width=140>Cdif</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1496.1.peg.2965">fig|1496.1.peg.2965</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=115250885">115250885<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_1 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-20</td>  <td class=xl37 width=257><a name=Cthe_5  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20thermocellum"><span  style='font-style:italic'>Clostridium thermocellum</span></a></td>  <td class=xl27 width=140>Cthe_5</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203119.1.peg.2939">fig|203119.1.peg.2939</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=67874921">67874921<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_2 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-21</td>  <td class=xl37 width=257><a name=Mthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Moorella%20%20thermoacetica"><span  style='font-style:italic'>Moorella thermoacetica</span></a></td>  <td class=xl27 width=140>Mthe_3</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C264732.1.peg.2464">fig|264732.1.peg.2464</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=83590180&amp;dopt=GenPept"  target="_blank">83590180<font class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_3 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-22</td>  <td class=xl37 width=257><a name=Drad  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Deinococcus%20%20radiodurans"><span  style='font-style:italic'>Deinococcus radiodurans</span></a></td>  <td class=xl27 width=140>Drad</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243230.1.peg.1305">fig|243230.1.peg.1305</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6458858">6458858<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Deinococci (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-23</td>  <td class=xl37 width=257><a name=Bthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bacteroides%20%20thetaiotaomicron"><span  style='font-style:italic'>Bacteroides thetaiotaomicron</span></a></td>  <td class=xl27 width=140>Bthe_9</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C226186.1.peg.3931">fig|226186.1.peg.3931</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29341249">29341249<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Bacteroidetes (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-24</td>  <td class=xl37 width=257><a name=Ctep  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chlorobium%20%20tepidum"><span  style='font-style:italic'>Chlorobium tepidum</span></a></td>  <td class=xl27 width=140>Ctep</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C194439.1.peg.84">fig|194439.1.peg.84</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21672925">21672925<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Chlorobia (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-25</td>  <td class=xl37 width=257><a name=Pmio  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Petrotoga%20%20miotherma"><span  style='font-style:italic'>Petrotoga miotherma</span></a></td>  <td class=xl27 width=140>Pmio</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Phylogenetic mixture: Petrotoga (Genus) &amp;<font  class=font6> </font><font class=font5>Dictyoglomi  (Class) </font></td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-26</td>  <td class=xl37 width=257><a name=Cbur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Coxiella%20%20burnetii"><span  style='font-style:italic'>Coxiella burnetii</span></a></td>  <td class=xl27 width=140>Cbur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C227377.1.peg.935">fig|227377.1.peg.935</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29654299">29654299<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: upper-Gammaproteobacteria  (“subclass”) &amp; Sphingobacteria (Class) &amp; Alphaproteobacteria (Class)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-27</td>  <td class=xl37 width=257><a name=Rbal  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodopirellula%20%20baltica"><span  style='font-style:italic'>Rhodopirellula baltica <font class=font9>(</font><font  class=font13>Pirellula </font><font class=font9>sp.)</font></span></a></td>  <td class=xl27 width=140>Rbal</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243090.1.peg.3009">fig|243090.1.peg.3009</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=32473675">32473675<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Planctomycetaceae (Family)  &amp; Myxococcales (Order) &amp; Verrucomicrobia (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-28</td>  <td class=xl37 width=257><a name=Lint_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Leptospira%20%20interrogans"><span  style='font-style:italic'>Leptospira interrogans</span></a></td>  <td class=xl27 width=140>Lint_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C267671.1.peg.2379">fig|267671.1.peg.2379</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=45658293">45658293<font  class=font10>*</font></a></td>  <td class=xl34>Phylogenetic mixture: Spirochaetes (Phylum) &amp;  Fibrobacteres (Phylum) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-29</td>  <td class=xl37 width=257><a name=Deth  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dehalococcoides%20%20ethenogenes"><span  style='font-style:italic'>Dehalococcoides ethenogenes </span></a></td>  <td class=xl27 width=140>Deth</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243164.3.peg.722">fig|243164.3.peg.722</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=57234714">57234714<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Chloroflexi (Phylum) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-30</td>  <td class=xl37 width=257><a name=2Rrub_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodospirillum%20rubrum"  target="_blank"><span style='font-style:italic'>Rhodospirillum rubrum</span></a></td>  <td class=xl27 width=140>2Rrub_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1085.1.peg.3401">fig|1085.1.peg.3401</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=83592308">83592308<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alpha_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-31</td>  <td class=xl37 width=257><a name=Gobs  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Gemmata%20%20obscuriglobus"><span  style='font-style:italic'>Gemmata obscuriglobus</span></a></td>  <td class=xl27 width=140>Gobs</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Planctomyceteceae (Family)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Afer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Acidithiobacillus%20%20ferrooxidans"><span  style='font-style:italic'>Acidithiobacillus ferrooxidans</span></a></td>  <td class=xl27 width=140>Afer_4</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>upper-Gammaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Aaeo  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Aquifex%20%20aeolicus"><span  style='font-style:italic'>Aquifex aeolicus</span></a></td>  <td class=xl27 width=140>Aaeo</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224324.1.peg.1217">fig|224324.1.peg.1217</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15606822">15606822<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Aquificae (Phylum) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=AZOA  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Azoarcus%20%20"><span  style='font-style:italic'>Azoarcus <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>AZOA</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C76114.4.peg.1423">fig|76114.4.peg.1423</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=56475924">56475924<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Cvio  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chromobacterium%20%20violaceum"><span  style='font-style:italic'>Chromobacterium violaceum</span></a></td>  <td class=xl27 width=140>Cvio</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243365.1.peg.3407">fig|243365.1.peg.3407</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34498862">34498862<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Daro  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dechloromonas%20%20aromatica"><span  style='font-style:italic'>Dechloromonas aromatica</span></a></td>  <td class=xl27 width=140>Daro</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C159087.4.peg.933">fig|159087.4.peg.933</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71906873">71906873<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Dhaf  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfitobacterium%20%20hafniense"><span  style='font-style:italic'>Desulfitobacterium hafniense</span></a></td>  <td class=xl27 width=140>Dhaf</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C49338.1.peg.2227">fig|49338.1.peg.2227</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=89334457">89334457<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia<font class=font6> </font><font  class=font5>(“subclass”) orphan</font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=MAGN_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Magnetococcus%20%20"><span  style='font-style:italic'>Magnetococcus <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>MAGN_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C156889.1.peg.1669">fig|156889.1.peg.1669</a></td>  <td class=xl42>NA</td>  <td class=xl27 width=470>Unclassified Proteobacteria orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mfla  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylobacillus%20%20flagellatus"><span  style='font-style:italic'>Methylobacillus flagellatus</span></a></td>  <td class=xl27 width=140>Mfla_5</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C265072.1.peg.206">fig|265072.1.peg.206</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91775427">91775427<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mcap_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylococcus%20%20capsulatus"><span  style='font-style:italic'>Methylococcus capsulatus</span></a></td>  <td class=xl27 width=140>Mcap_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243233.4.peg.782">fig|243233.4.peg.782</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=53804254">53804254<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mdeg  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Microbulbifer%20%20degradans"><span  style='font-style:italic'>Microbulbifer degradans</span></a></td>  <td class=xl27 width=140>Mdeg</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203122.1.peg.1111">fig|203122.1.peg.1111</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=90021791">90021791<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Noce  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosococcus%20%20oceani"><span  style='font-style:italic'>Nitrosococcus oceani</span></a></td>  <td class=xl27 width=140>Noce</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C323261.3.peg.7">fig|323261.3.peg.7</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77163714">77163714<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Pubi  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pelagibacter%20%20ubique"><span  style='font-style:italic'>Pelagibacter ubique<font class=font11><sup>d</sup></font></span></a></td>  <td class=xl27 width=140>Pubi</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C335992.3.peg.1115">fig|335992.3.peg.1115</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71082920">71082920<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alphaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl39><a name=Sthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Symbiobacterium%20%20thermophilum"><span  style='font-style:italic'>Symbiobacterium thermophilum</span></a></td>  <td class=xl27 width=140>Sthe</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292459.1.peg.1361">fig|292459.1.peg.1361</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=51856245">51856245<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Actinobacteria (Class) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Sfum  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophobacter%20%20fumaroxidans"><span  style='font-style:italic'>Syntrophobacter fumaroxidans</span></a></td>  <td class=xl27 width=140>Sfum_1</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71548230">71548230<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Syntrophobacterales<font class=font6> </font><font  class=font5>(Order) orphan</font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Swol  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophomonas%20%20wolfei"><span  style='font-style:italic'>Syntrophomonas wolfei</span></a></td>  <td class=xl27 width=140>Swol_1</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114566874">114566874<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tcom  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermodesulfobacterium%20%20commune"><span  style='font-style:italic'>Thermodesulfobacterium commune</span></a></td>  <td class=xl27 width=140>Tcom</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Thermodesulfobacteria (Phylum) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tmar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermotoga%20%20maritima"><span  style='font-style:italic'>Thermotoga maritima</span></a></td>  <td class=xl27 width=140>Tmar</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243274.1.peg.339">fig|243274.1.peg.339</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15643112">15643112<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Thermotogae (Genus) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tden  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thiobacillus%20%20denitrificans"><span  style='font-style:italic'>Thiobacillus denitrificans</span></a></td>  <td class=xl27 width=140>Tden</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292415.3.peg.543">fig|292415.3.peg.543</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=74316971">74316971<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-80</td>  <td class=xl37 width=257><a name=Mbur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanococcoides%20%20burtonii"><span  style='font-style:italic'>Methanococcoides burtonii</span></a></td>  <td class=xl27 width=140>Mbur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259564.1.peg.2246">fig|259564.1.peg.2246</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91773934">91773934<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Euryarchaea (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-81</td>  <td class=xl37 width=257><a name=Hmar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Haloarcula%20%20marismortui"><span  style='font-style:italic'>Haloarcula marismortui</span></a></td>  <td class=xl27 width=140>Hmar_2</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C272569.1.peg.498">fig|272569.1.peg.498</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=55377389">55377389<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Halobacteria (Class) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-82</td>  <td class=xl37 width=257><a name=Faci   href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Ferroplasma%20%20acidarmanus"><span  style='font-style:italic'>Ferroplasma acidarmanus</span></a></td>  <td class=xl27 width=140>Faci_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C97393.1.peg.324">fig|97393.1.peg.324</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=68141176">68141176<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Thermoplasmata (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-83</td>  <td class=xl37 width=257><a name=Mhun  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanospirillum%20%20hungatei"><span  style='font-style:italic'>Methanospirillum hungatei</span></a></td>  <td class=xl27 width=140>Mhun</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=88602324">88602324<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Methanomicrobia (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-84</td>  <td class=xl37 width=257><a name=Ssol  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Sulfolobus%20%20solfataricus"><span  style='font-style:italic'>Sulfolobus solfataricus</span></a></td>  <td class=xl27 width=140>Ssol</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273057.1.peg.273">fig|273057.1.peg.273</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15897245">15897245<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Sulfolobales (Order)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-85</td>  <td class=xl37 width=257><a name=Paer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pyrobaculum%20%20aerophilum"><span  style='font-style:italic'>Pyrobaculum aerophilum</span></a></td>  <td class=xl27 width=140>Paer_2</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C178306.1.peg.1339">fig|178306.1.peg.1339</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=18312982">18312982<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Thermoprotei (Class) &amp;  Thermococcaceae (Family)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-86</td>  <td class=xl37 width=257><a name=Aful  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Archaeoglobus%20%20fulgidus"><span  style='font-style:italic'>Archaeoglobus fulgidus</span></a></td>  <td class=xl27 width=140>Aful_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224325.1.peg.224">fig|224325.1.peg.224</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=11497843">11497843<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Archaeoglobi (Class) &amp;  Nanoarchaeota     (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-95</td>  <td class=xl37 width=257><a name=1Atha  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Arabidopsis%20%20thaliana"><span  style='font-style:italic'>Arabidopsis thaliana</span></a></td>  <td class=xl27 width=140>1Atha</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C3702.1.peg.1877">fig|3702.1.peg.1877</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15218283">15218283<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Viridiplantae (Kingdom)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-98</td>  <td class=xl37 width=257><a name=Scer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Saccharomyces%20%20cerevisiae"><span  style='font-style:italic'>Saccharomyces cerevisiae</span></a></td>  <td class=xl27 width=140>Scer</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C4932.3.peg.431">fig|4932.3.peg.431</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6319643">6319643<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Fungi (Kingdom)</td> </tr> <tr height=21>  <td height=21 class=xl28><sup></sup></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr class=xl33 height=21>  <td colspan=6 height=21 class=xl47><sup>a</sup><font class=font5>Organism  acronyms consist of four letters:  the first letter of the genus name  followed by the first three letters of the species name.  If  underscore/number designations follow the acronym  </font></td> </tr> <tr class=xl33 height=21>  <td colspan=6 height=21 class=xl44>    proper, these are used to distinguish  potential ambiguities as implemented at AroPath.   Multiple TyrA species in a  single organism are distinguished by numbers preceding the acronym.    . </td> </tr> <tr height=21>  <td colspan=4 height=21 class=xl48><a  href="http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html)">     http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html)</a></td>  <td></td>  <td></td> </tr> <tr height=21>  <td height=21 class=xl30></td>  <td class=xl36></td>  <td class=xl36></td>  <td class=xl36></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=5 height=21 class=xl46><sup>b</sup><font class=font5>Gene  identification number. A red asterisk indicates that sequencing of the genome  is essentially complete.</font></td>  <td></td> </tr> <tr height=21>  <td height=21 class=xl29><sup></sup></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl46><sup>c</sup><font class=font5>An attempt  is made to describe each cohesion group at the hierarchical level at which  all organisms having the sequence occupy the same taxon.      NCBI’s taxonomy  page is used as a  </font></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    resource for this.  Typically,  cohesion groups gather at about the level of Class, but wide deviations occur  in either direction (see text).  In our treatment, Gammaptoteobacteria can be</td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    thought of as the equivalent of a  Superclass, with lower-Gammaproteobacteria and upper-Gammaproteobacteria  being elevatd to the taxon level of Class.  The designation “subclass” </td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    indicates cohesion groups that  partition within a formal class.   Thus, for example, the Betaproteobacteria  (a formal class) partition into five cohesion groups which do not correspond  </td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    to formal taxon subdivisions.  For  detailed information the organism names are hyper-linked to the Taxonomy  Browser at NCBI.</td> </tr> <tr height=21>  <td height=21 class=xl35></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl46><sup>d</sup><font class=font8>Pelagibacter  ubique</font><font class=font5> is labeled as Candidatus </font><font  class=font8>Pelagibacter ubique</font><font class=font5> in many databases  (“Candidatus” refers to an organism that cannot be maintained in a culture  collection)  preceding </font></td> </tr> <tr height=21>  <td colspan=2 height=21 class=xl44>    the genus/species designation.</td>  <td class=xl33></td>  <td class=xl33></td>  <td class=xl33></td>  <td class=xl33></td> </tr> </table> </body> </html>  
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358    </head>
359    
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361    <center>
362    <table  cellspacing=2>
363    <tr>
364    <td bgcolor="lightblue">
365    <b><font size="+3" >The SEED: an Annotation/Analysis Tool Provided by <a href="FIG.html">FIG</a></font></b>
366    
367    <br>
368    [ <a href="http://subsys.info">Subsystem Forum</a> |
369    <a href="../eggs.cgi">Essentiality Data</a> |
370    <a href="tutorials.html">FIG Tutorials</a> |
371    <a href="../p2p/new_seed_update_page.cgi?user=">Peer-to-peer Updates</a> |
372    <a href="../p2p/ch.cgi?user=">(New) Clearinghouse</a> |
373    
374    <a href="../seed_ctl.cgi?user=">SEED Control Panel</a> |
375    <a href="http://www.nmpdr.org/">NMPDR</a> |
376    <a href="http://www-unix.mcs.anl.gov/SEEDWiki/">SEED Wiki</a>]
377    <br>
378    [<a href="http://www.genomesonline.org/">GOLD</a> |
379    <a href="CompleteSeedGenomes.html">"Complete" Genomes in SEED </a> |
380    <a href="http://au.expasy.org/">ExPASy</a> |
381    
382    <a href="http://img.jgi.doe.gov/">IMG</a> |
383    <a href="http://www.genome.jp/kegg/kegg2.html">KEGG</a> |
384    <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a> |
385    <a href="http://www.tigr.org/tigr-scripts/CMR2/CMRGenomes.spl">TIGR cmr</a> |
386    <a href="http://www.pir.uniprot.org/">UniProt</a> |
387    <a href="http://borrelia.ci.uchicago.edu/fogbugz">Report "Bugz"</a>]
388    <br>
389    <br>
390    <a href="../Html/tyrASubsystem.html">TyrA Subsystem Homepage</a>
391    <br>
392    <td>
393    <img src=seed-logo-green.png alt=seedlogo>
394    </td>
395    </tr>
396    </table>
397    </center>
398    
399    
400    <table border=0 cellpadding=0 cellspacing=0 width=1045 style='border-collapse:
401     collapse;table-layout:fixed'>
402     <col width=83>
403     <col width=261>
404     <col width=85>
405     <col width=167>
406     <col width=100>
407     <col width=349>
408     <col width=53 span=250>
409     <tr height=21>
410      <td height=21 class=xl24 colspan=4 width=596>Table 1.  Sources &amp;
411      properties of representative sequences for TyrA cohesion groups <font
412      class=font5> </font></td>
413      <td width=100></td>
414      <td width=349></td>
415     </tr>
416     <tr height=16>
417      <td height=16 class=xl24></td>
418      <td></td>
419      <td></td>
420      <td></td>
421      <td></td>
422      <td></td>
423     </tr>
424     <tr height=36>
425      <td height=36 class=xl30 width=83>Cohesion group</td>
426      <td class=xl30 width=261>Source of TyrA sequence</td>
427      <td class=xl30 width=85>Acronym<font class=font7><sup>a</sup></font></td>
428      <td class=xl31 width=167>SEED: fig &amp; peg number</td>
429      <td class=xl31 width=100>gi number<font class=font7><sup>b</sup></font></td>
430      <td class=xl30 width=349>Taxon placement of non-LGT members<font class=font7><sup>c</sup></font></td>
431     </tr>
432     <tr height=21>
433      <td height=21 class=xl25 width=83>TyrCG-1     <font class=font15>&#946;</font></td>
434      <td class=xl35 width=261><a
435      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Erwinia%20carotovora"><span
436      style='font-style:italic'>Erwinia carotovora</span></a></td>
437    <td class=xl27 width=85>Ecar<a name=Ecar></a></td>
438      <td class=xl26 width=167><a
439      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C218491.3.peg.2590">fig|218491.3.peg.2590</a></td>
440      <td class=xl26 width=100><a
441      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=50122273">50122273*</a></td>
442      <td class=xl27 width=349>lower-Gammaproteobacteria (4 Orders)</td>
443     </tr>
444     <tr height=21>
445      <td height=21 class=xl25 width=83>TyrCG-2     <font class=font14>&#945;</font></td>
446      <td class=xl35 width=261><a
447      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pseudomonas%20putida"><span
448      style='font-style:italic'>Pseudomonas putida</span></a></td>
449    <td class=xl27 width=85>Pput<a name=Pput></a></td>
450      <td class=xl26 width=167><a
451      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C160488.1.peg.1756">fig|160488.1.peg.1756</a></td>
452      <td class=xl26 width=100><a
453      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=26988501">26988501<font
454      class=font10>*</font></a></td>
455      <td class=xl27 width=349>upper-Gamma_1proteobacteria (Pseudomonadaceae
456      Family)</td>
457     </tr>
458     <tr height=21>
459      <td height=21 class=xl25 width=83>TyrCG-3     <font class=font14>&#945;</font></td>
460      <td class=xl37><a
461      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Psychrobacter%20"><span
462      style='font-style:italic'>Psychrobacter <font class=font9>sp.</font></span></a></td>
463    <td class=xl27 width=85>PSYC<a name=PSYC></a></td>
464      <td class=xl26 width=167><a
465      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259536.4.peg.787">fig|259536.4.peg.787</a></td>
466      <td class=xl26 width=100><a
467      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71038727">71038727<font
468      class=font10>*</font></a></td>
469      <td class=xl27 width=349>upper-Gamma_2proteobacteria (Moraxellaceae Family)</td>
470     </tr>
471     <tr height=21>
472      <td height=21 class=xl25 width=83>TyrCG-4     <font class=font15>&#946;</font></td>
473      <td class=xl35 width=261><a
474      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Xanthomonas%20campestris"><span
475      style='font-style:italic'>Xanthomonas campestris</span></a></td>
476    <td class=xl27 width=85>Xcam<a name=Xcam></a></td>
477      <td class=xl26 width=167><a
478      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C190485.1.peg.1454">fig|190485.1.peg.1454</a></td>
479      <td class=xl26 width=100><a
480      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21230932">21230932<font
481      class=font10>*</font></a></td>
482      <td class=xl27 width=349>upper-Gamma_3proteobacteria (Xanthomonadaceae
483      Family)</td>
484     </tr>
485     <tr height=21>
486      <td height=21 class=xl25 width=83>TyrCG-5     <font class=font14>&#945;</font></td>
487      <td class=xl35 width=261><a
488      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Alkalilimnicola%20ehrlichei"><span
489      style='font-style:italic'>Alkalilimnicola ehrlichei</span></a></td>
490    <td class=xl27 width=85>Aehr<a name=Aehr></a></td>
491      <td class=xl34><a
492      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%187272.6.peg.896">fig|187272.6.peg.896</a></td>
493      <td class=xl39><a
494      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114320089">114320089</a></td>
495      <td class=xl27 width=349>upper-Gamma_4proteobacteria (Chromatiales Order)</td>
496     </tr>
497     <tr height=21>
498      <td height=21 class=xl25 width=83>TyrCG-6     <font class=font14>&#945;</font></td>
499      <td class=xl35 width=261><a
500      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Marinobacter%20aquaeolei"><span
501      style='font-style:italic'>Marinobacter aquaeolei</span></a></td>
502    <td class=xl27 width=85>Maqu<a name=Maqu></a></td>
503      <td class=xl42 width=167>NA</td>
504      <td class=xl38 width=100><a
505      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77952716">77952716</a></td>
506      <td class=xl27 width=349>upper-Gamma_5proteobacteria (2 Orders)</td>
507     </tr>
508     <tr height=21>
509      <td height=21 class=xl25 width=83>TyrCG-7     <font class=font14>&#945;</font></td>
510      <td class=xl35 width=261><a
511      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Burkholderia%20xenovorans"><span
512      style='font-style:italic'>Burkholderia xenovorans</span></a></td>
513    <td class=xl27 width=85>Bxen<a name=Bxen></a></td>
514      <td class=xl26 width=167><a
515      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C36873.1.peg.4890">fig|36873.1.peg.4890</a></td>
516      <td class=xl26 width=100><a
517      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91784814">91784814<font
518      class=font10>*</font></a></td>
519      <td class=xl27 width=349>Beta_1proteobacteria (Burkholderiaceae Family)</td>
520     </tr>
521     <tr height=21>
522      <td height=21 class=xl25 width=83>TyrCG-8     <font class=font14>&#945;</font></td>
523      <td class=xl35 width=261><a
524      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bordetella%20pertussis"><span
525      style='font-style:italic'>Bordetella pertussis</span></a></td>
526    <td class=xl27 width=85>Bper_1<a name=Bper_1></a></td>
527      <td class=xl26 width=167><a
528      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C257313.1.peg.827">fig|257313.1.peg.827</a></td>
529      <td class=xl26 width=100><a
530      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=33592104">33592104<font
531      class=font10>*</font></a></td>
532      <td class=xl27 width=349>Beta_2proteobacteria (Alcaligenaceae Family)</td>
533     </tr>
534     <tr height=21>
535      <td height=21 class=xl25 width=83>TyrCG-9     <font class=font14>&#945;</font></td>
536      <td class=xl35 width=261><a
537      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Neisseria%20gonorrhoeae"><span
538      style='font-style:italic'>Neisseria gonorrhoeae</span></a></td>
539    <td class=xl27 width=85>Ngon<a name=Ngon></a></td>
540      <td class=xl26 width=167><a
541      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C242231.4.peg.1532">fig|242231.4.peg.1532</a></td>
542      <td class=xl26 width=100><a
543      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=59801853">59801853<font
544      class=font10>*</font></a></td>
545      <td class=xl27 width=349>Beta_3proteobacteria (Neisseriaceae Family)</td>
546     </tr>
547     <tr height=21>
548      <td height=21 class=xl25 width=83>TyrCG-10   <font class=font14>&#945;</font></td>
549      <td class=xl35 width=261><a
550      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Polaromonas%20"><span
551      style='font-style:italic'>Polaromonas <font class=font9>sp.</font></span></a></td>
552    <td class=xl27 width=85>POLA<a name=POLA></a></td>
553      <td class=xl26 width=167><a
554      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C296591.1.peg.2815">fig|296591.1.peg.2815</a></td>
555      <td class=xl26 width=100><a
556      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91787673">91787673<font
557      class=font10>*</font></a></td>
558      <td class=xl27 width=349>Beta_4proteobacteria (Comamonadaceae Family)</td>
559     </tr>
560     <tr height=21>
561      <td height=21 class=xl25 width=83>TyrCG-11   <font class=font14>&#945;</font></td>
562      <td class=xl35 width=261><a
563      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosomonas%20europaea"><span
564      style='font-style:italic'>Nitrosomonas europaea</span></a></td>
565    <td class=xl27 width=85>Neur<a name=Neur></a></td>
566      <td class=xl26 width=167><a
567      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C228410.1.peg.323">fig|228410.1.peg.323</a></td>
568      <td class=xl26 width=100><a
569      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=30248354">30248354<font
570      class=font10>*</font></a></td>
571      <td class=xl27 width=349>Beta_5proteobacteria (Nitrosomonadaceae Family)</td>
572     </tr>
573     <tr height=21>
574      <td height=21 class=xl25 width=83>TyrCG-12   <font class=font14>&#945;</font></td>
575      <td class=xl35 width=261><a
576      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bartonella%20henselae"><span
577      style='font-style:italic'>Bartonella henselae</span></a></td>
578    <td class=xl27 width=85>Bhen<a name=Bhen></a></td>
579      <td class=xl26 width=167><a
580      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C283166.1.peg.1442">fig|283166.1.peg.1442</a></td>
581      <td class=xl26 width=100><a
582      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=49476273">49476273<font
583      class=font10>*</font></a></td>
584      <td class=xl27 width=349>Alpha_1proteobacteria (Most Orders)</td>
585     </tr>
586     <tr height=21>
587      <td height=21 class=xl25 width=83>TyrCG-13   <font class=font14>&#945;</font></td>
588      <td class=xl35 width=261><a
589      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Wolinella%20succinogenes"><span
590      style='font-style:italic'>Wolinella succinogenes</span></a></td>
591    <td class=xl27 width=85>Wsuc<a name=Wsuc></a></td>
592      <td class=xl26 width=167><a
593      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273121.1.peg.325">fig|273121.1.peg.325</a></td>
594      <td class=xl26 width=100><a
595      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34482497">34482497<font
596      class=font10>*</font></a></td>
597      <td class=xl27 width=349>Flavobacteria Class</td>
598     </tr>
599     <tr height=21>
600      <td height=21 class=xl25 width=83>TyrCG-14   <font class=font14>&#945;</font></td>
601      <td class=xl35 width=261><a
602      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Geobacter%20%20sulfurreducens"><span
603      style='font-style:italic'>Geobacter sulfurreducens</span></a></td>
604    <td class=xl27 width=85>Gsul<a name=Gsul></a></td>
605      <td class=xl26 width=167><a
606      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243231.1.peg.2590">fig|243231.1.peg.2590</a></td>
607      <td class=xl26 width=100><a
608      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=39997701">39997701<font
609      class=font10>*</font></a></td>
610      <td class=xl27 width=349>Delta_1proteobacteria (Desulfuromonadales Order)</td>
611     </tr>
612     <tr height=21>
613      <td height=21 class=xl25 width=83>TyrCG-15   <font class=font15>&#946;</font></td>
614      <td class=xl37><a
615      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfovibrio%20%20desulfuricans"><span
616      style='font-style:italic'>Desulfovibrio desulfuricans</span></a></td>
617    <td class=xl27 width=85>Ddes<a name=Ddes></a></td>
618      <td class=xl26 width=167><a
619      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C207559.3.peg.3693">fig|207559.3.peg.3693</a></td>
620      <td class=xl26 width=100><a
621      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=78358524">78358524<font
622      class=font10>*</font></a></td>
623      <td class=xl27 width=349>Delta_2proteobacteria (Desulfovibrionales Order)</td>
624     </tr>
625     <tr height=21>
626      <td height=21 class=xl25 width=83>TyrCG-16   <font class=font14>&#945;</font></td>
627      <td class=xl35 width=261><a
628      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Synechosystis"
629      target="_blank"><span style='font-style:italic'>Synechocystis <font
630      class=font9>sp.</font><font class=font13> </font></span></a></td>
631    <td class=xl27 width=85>SYNE_3<a name=SYNE_3></a></td>
632      <td class=xl26 width=167><a
633      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1148.1.peg.1391">fig|1148.1.peg.1391</a></td>
634      <td class=xl26 width=100><a
635      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=16330562">16330562<font
636      class=font10>*</font></a></td>
637      <td class=xl27 width=349>Cyanobacteria Phylum</td>
638     </tr>
639     <tr height=21>
640      <td height=21 class=xl25 width=83>TyrCG-17   <font class=font14>&#945;</font></td>
641      <td class=xl35 width=261><a
642      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermobifida%20%20fusca"><span
643      style='font-style:italic'>Thermobifida fusca</span></a></td>
644    <td class=xl27 width=85>Tfus<a name=Tfus></a></td>
645      <td class=xl26 width=167><a
646      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C269800.4.peg.764">fig|269800.4.peg.764</a></td>
647      <td class=xl26 width=100><a
648      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=72161612">72161612<font
649      class=font10>*</font></a></td>
650      <td class=xl27 width=349>Actinobacteridae Subclass</td>
651     </tr>
652     <tr height=21>
653      <td height=21 class=xl25 width=83>TyrCG-18   <font class=font14>&#945;</font></td>
654      <td class=xl35 width=261><a
655      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Lactobacillus%20plantarum"
656      target="_blank"><span style='font-style:italic'>Lactobacillus plantarum</span></a></td>
657    <td class=xl27 width=85>Lpla<a name=Lpla></a></td>
658      <td class=xl26 width=167><a
659      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C220668.1.peg.1693">fig|220668.1.peg.1693</a></td>
660      <td class=xl26 width=100><a
661      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=28271503">28271503<font
662      class=font10>*</font></a></td>
663      <td class=xl27 width=349>Bacilli Class</td>
664     </tr>
665     <tr height=21>
666      <td height=21 class=xl25 width=83>TyrCG-19   <font class=font14>&#945;</font></td>
667      <td class=xl35 width=261><a
668      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20difficile"><span
669      style='font-style:italic'>Clostridium difficile</span></a></td>
670    <td class=xl27 width=85>Cdif<a name=Cdif></a></td>
671      <td class=xl26 width=167><a
672      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1496.1.peg.2965">fig|1496.1.peg.2965</a></td>
673      <td class=xl26 width=100><a
674      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=115250885">115250885<font
675      class=font10>*</font></a></td>
676      <td class=xl27 width=349>Clostridia_1 (Clostridiales Order)</td>
677     </tr>
678     <tr height=21>
679      <td height=21 class=xl25 width=83>TyrCG-20   <font class=font14>&#945;</font></td>
680      <td class=xl35 width=261><a
681      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20thermocellum"><span
682      style='font-style:italic'>Clostridium thermocellum</span></a></td>
683    <td class=xl27 width=85>Cthe_5<a name=Cthe_5></a></td>
684      <td class=xl26 width=167><a
685      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203119.1.peg.2939">fig|203119.1.peg.2939</a></td>
686      <td class=xl26 width=100><a
687      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=67874921">67874921<font
688      class=font10>*</font></a></td>
689      <td class=xl27 width=349>Clostridia_2 (2 Orders)</td>
690     </tr>
691     <tr height=21>
692      <td height=21 class=xl25 width=83>TyrCG-21   <font class=font14>&#945;</font></td>
693      <td class=xl35 width=261><a
694      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Moorella%20%20thermoacetica"><span
695      style='font-style:italic'>Moorella thermoacetica</span></a></td>
696    <td class=xl27 width=85>Mthe_3<a name=Mthe_3></a></td>
697      <td class=xl26 width=167><a
698      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C264732.1.peg.2464">fig|264732.1.peg.2464</a></td>
699      <td class=xl26 width=100><a
700      href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=83590180&amp;dopt=GenPept"
701      target="_blank">83590180<font class=font10>*</font></a></td>
702      <td class=xl27 width=349>Clostridia_3 (2 Orders)</td>
703     </tr>
704     <tr height=21>
705      <td height=21 class=xl25 width=83>TyrCG-22   <font class=font14>&#945;</font></td>
706      <td class=xl35 width=261><a
707      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Deinococcus%20%20radiodurans"><span
708      style='font-style:italic'>Deinococcus radiodurans</span></a></td>
709    <td class=xl27 width=85>Drad<a name=Drad></a></td>
710      <td class=xl26 width=167><a
711      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243230.1.peg.1305">fig|243230.1.peg.1305</a></td>
712      <td class=xl26 width=100><a
713      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6458858">6458858<font
714      class=font10>*</font></a></td>
715      <td class=xl27 width=349>Deinococci Class</td>
716     </tr>
717     <tr height=21>
718      <td height=21 class=xl25 width=83>TyrCG-23   <font class=font15>&#946;</font></td>
719      <td class=xl35 width=261><a
720      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bacteroides%20%20thetaiotaomicron"><span
721      style='font-style:italic'>Bacteroides thetaiotaomicron</span></a></td>
722    <td class=xl27 width=85>Bthe_9<a name=Bthe_9></a></td>
723      <td class=xl26 width=167><a
724      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C226186.1.peg.3931">fig|226186.1.peg.3931</a></td>
725      <td class=xl26 width=100><a
726      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29341249">29341249<font
727      class=font10>*</font></a></td>
728      <td class=xl27 width=349>Bacteroidetes Class</td>
729     </tr>
730     <tr height=21>
731      <td height=21 class=xl25 width=83>TyrCG-24   <font class=font14>&#945;</font></td>
732      <td class=xl35 width=261><a
733      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chlorobium%20%20tepidum"><span
734      style='font-style:italic'>Chlorobium tepidum</span></a></td>
735    <td class=xl27 width=85>Ctep<a name=Ctep></a></td>
736      <td class=xl26 width=167><a
737      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C194439.1.peg.84">fig|194439.1.peg.84</a></td>
738      <td class=xl26 width=100><a
739      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21672925">21672925<font
740      class=font10>*</font></a></td>
741      <td class=xl27 width=349>Chlorobia Class</td>
742     </tr>
743     <tr height=21>
744      <td height=21 class=xl25 width=83>TyrCG-25   <font class=font14>&#945;</font></td>
745      <td class=xl35 width=261><a
746      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Petrotoga%20%20miotherma"><span
747      style='font-style:italic'>Petrotoga miotherma</span></a></td>
748    <td class=xl27 width=85>Pmio<a name=Pmio></a></td>
749      <td class=xl41 width=167>NA</td>
750      <td class=xl27 width=100>NA</td>
751      <td class=xl45>Unresolved phylogenetic mixture</td>
752     </tr>
753     <tr height=21>
754      <td height=21 class=xl25 width=83>TyrCG-26   <font class=font15>&#946;</font></td>
755      <td class=xl35 width=261><a
756      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Coxiella%20%20burnetii"><span
757      style='font-style:italic'>Coxiella burnetii</span></a></td>
758    <td class=xl27 width=85>Cbur<a name=Cbur></a></td>
759      <td class=xl26 width=167><a
760      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C227377.1.peg.935">fig|227377.1.peg.935</a></td>
761      <td class=xl26 width=100><a
762      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29654299">29654299<font
763      class=font10>*</font></a></td>
764      <td class=xl40>Unresolved phylogenetic mixture</td>
765     </tr>
766     <tr height=21>
767      <td height=21 class=xl25 width=83>TyrCG-27   <font class=font14>&#945;</font></td>
768      <td class=xl35 width=261><a
769      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodopirellula%20%20baltica"><span
770      style='font-style:italic'>Rhodopirellula baltica <font class=font9>(</font><font
771      class=font13>Pirellula </font><font class=font9>sp.)</font></span></a></td>
772    <td class=xl27 width=85>Rbal<a name=Rbal></a></td>
773      <td class=xl26 width=167><a
774      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243090.1.peg.3009">fig|243090.1.peg.3009</a></td>
775      <td class=xl26 width=100><a
776      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=32473675">32473675<font
777      class=font10>*</font></a></td>
778      <td class=xl46>Unresolved phylogenetic mixture</td>
779     </tr>
780     <tr height=21>
781      <td height=21 class=xl25 width=83>TyrCG-28   <font class=font14>&#945;</font></td>
782      <td class=xl35 width=261><a
783      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Leptospira%20%20interrogans"><span
784      style='font-style:italic'>Leptospira interrogans</span></a></td>
785    <td class=xl27 width=85>Lint_1<a name=Lint_1></a></td>
786      <td class=xl26 width=167><a
787      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C267671.1.peg.2379">fig|267671.1.peg.2379</a></td>
788      <td class=xl26 width=100><a
789      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=45658293">45658293<font
790      class=font10>*</font></a></td>
791      <td class=xl40>Unresolved phylogenetic mixture</td>
792     </tr>
793     <tr height=21>
794      <td height=21 class=xl25 width=83>TyrCG-29  <font class=font16> </font><font
795      class=font15>&#946;</font></td>
796      <td class=xl35 width=261><a
797      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dehalococcoides%20%20ethenogenes"><span
798      style='font-style:italic'>Dehalococcoides ethenogenes </span></a></td>
799    <td class=xl27 width=85>Deth<a name=Deth></a></td>
800      <td class=xl26 width=167><a
801      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243164.3.peg.722">fig|243164.3.peg.722</a></td>
802      <td class=xl26 width=100><a
803      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=57234714">57234714<font
804      class=font10>*</font></a></td>
805      <td class=xl27 width=349>Chloroflexi Phylum </td>
806     </tr>
807     <tr height=21>
808      <td height=21 class=xl25 width=83>TyrCG-30   <font class=font15>&#946;</font></td>
809      <td class=xl35 width=261><a
810      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodospirillum%20rubrum"
811      target="_blank"><span style='font-style:italic'>Rhodospirillum rubrum</span></a></td>
812    <td class=xl27 width=85>2Rrub_1<a name=2Rrub_1></a></td>
813      <td class=xl26 width=167><a
814      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1085.1.peg.3401">fig|1085.1.peg.3401</a></td>
815      <td class=xl26 width=100><a
816      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=83592308">83592308<font
817      class=font10>*</font></a></td>
818      <td class=xl27 width=349>Alpha_2proteobacteria (2 Orders)</td>
819     </tr>
820     <tr height=21>
821      <td height=21 class=xl25 width=83>TyrCG-31   <font class=font14>&#945;</font></td>
822      <td class=xl35 width=261><a
823      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Gemmata%20%20obscuriglobus"><span
824      style='font-style:italic'>Gemmata obscuriglobus</span></a></td>
825    <td class=xl27 width=85>Gobs<a name=Gobs></a></td>
826      <td class=xl41 width=167>NA</td>
827      <td class=xl27 width=100>NA</td>
828      <td class=xl27 width=349>Planctomyceteceae Family</td>
829     </tr>
830     <tr height=21>
831      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
832      <td class=xl35 width=261><a
833      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Acidithiobacillus%20%20ferrooxidans"><span
834      style='font-style:italic'>Acidithiobacillus ferrooxidans</span></a></td>
835    <td class=xl27 width=85>Afer_4<a name=Afer_4></a></td>
836      <td class=xl41 width=167>NA</td>
837      <td class=xl27 width=100>NA</td>
838      <td class=xl27 width=349>upper-Gammaproteobacteria orphan</td>
839     </tr>
840     <tr height=21>
841      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
842      <td class=xl35 width=261><a
843      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Aquifex%20%20aeolicus"><span
844      style='font-style:italic'>Aquifex aeolicus</span></a></td>
845    <td class=xl27 width=85>Aaeo<a name=Aaeo></a></td>
846      <td class=xl36><a
847      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224324.1.peg.1217">fig|224324.1.peg.1217</a></td>
848      <td class=xl26 width=100><a
849      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15606822">15606822<font
850      class=font10>*</font></a></td>
851      <td class=xl27 width=349>Aquificae orphan</td>
852     </tr>
853     <tr height=21>
854      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
855      <td class=xl35 width=261><a
856      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Azoarcus%20%20"><span
857      style='font-style:italic'>Azoarcus <font class=font9>sp.</font></span></a></td>
858    <td class=xl27 width=85>AZOA<a name=AZOA></a></td>
859      <td class=xl36><a
860      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C76114.4.peg.1423">fig|76114.4.peg.1423</a></td>
861      <td class=xl26 width=100><a
862      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=56475924">56475924<font
863      class=font10>*</font></a></td>
864      <td class=xl27 width=349>Betaproteobacteria orphan</td>
865     </tr>
866     <tr height=21>
867      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
868      <td class=xl35 width=261><a
869      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chromobacterium%20%20violaceum"><span
870      style='font-style:italic'>Chromobacterium violaceum</span></a></td>
871    <td class=xl27 width=85>Cvio<a name=Cvio></a></td>
872      <td class=xl26 width=167><a
873      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243365.1.peg.3407">fig|243365.1.peg.3407</a></td>
874      <td class=xl26 width=100><a
875      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34498862">34498862<font
876      class=font10>*</font></a></td>
877      <td class=xl27 width=349>Betaproteobacteria orphan</td>
878     </tr>
879     <tr height=21>
880      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
881      <td class=xl35 width=261><a
882      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dechloromonas%20%20aromatica"><span
883      style='font-style:italic'>Dechloromonas aromatica</span></a></td>
884    <td class=xl27 width=85>Daro<a name=Daro></a></td>
885      <td class=xl26 width=167><a
886      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C159087.4.peg.933">fig|159087.4.peg.933</a></td>
887      <td class=xl26 width=100><a
888      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71906873">71906873<font
889      class=font10>*</font></a></td>
890      <td class=xl27 width=349>Betaproteobacteria orphan</td>
891     </tr>
892     <tr height=21>
893      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
894      <td class=xl35 width=261><a
895      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfitobacterium%20%20hafniense"><span
896      style='font-style:italic'>Desulfitobacterium hafniense</span></a></td>
897    <td class=xl27 width=85>Dhaf<a name=Dhaf></a></td>
898      <td class=xl26 width=167><a
899      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C49338.1.peg.2227">fig|49338.1.peg.2227</a></td>
900      <td class=xl26 width=100><a
901      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=89334457">89334457<font
902      class=font10>*</font></a></td>
903      <td class=xl27 width=349>Clostridia<font class=font6> </font><font
904      class=font5>orphan</font></td>
905     </tr>
906     <tr height=21>
907      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
908      <td class=xl35 width=261><a
909      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Magnetococcus%20%20"><span
910      style='font-style:italic'>Magnetococcus <font class=font9>sp.</font></span></a></td>
911    <td class=xl27 width=85>MAGN_1<a name=MAGN_1></a></td>
912      <td class=xl26 width=167><a
913      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C156889.1.peg.1669">fig|156889.1.peg.1669</a></td>
914      <td class=xl40>NA</td>
915      <td class=xl27 width=349>Unclassified Proteobacteria orphan</td>
916     </tr>
917     <tr height=21>
918      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
919      <td class=xl35 width=261><a
920      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylobacillus%20%20flagellatus"><span
921      style='font-style:italic'>Methylobacillus flagellatus</span></a></td>
922    <td class=xl27 width=85>Mfla_5<a name=Mfla_5></a></td>
923      <td class=xl26 width=167><a
924      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C265072.1.peg.206">fig|265072.1.peg.206</a></td>
925      <td class=xl26 width=100><a
926      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91775427">91775427<font
927      class=font10>*</font></a></td>
928      <td class=xl27 width=349>Betaproteobacteria orphan</td>
929     </tr>
930     <tr height=21>
931      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
932      <td class=xl35 width=261><a
933      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylococcus%20%20capsulatus"><span
934      style='font-style:italic'>Methylococcus capsulatus</span></a></td>
935    <td class=xl27 width=85>Mcap_1<a name=Mcap_1></a></td>
936      <td class=xl26 width=167><a
937      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243233.4.peg.782">fig|243233.4.peg.782</a></td>
938      <td class=xl26 width=100><a
939      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=53804254">53804254<font
940      class=font10>*</font></a></td>
941      <td class=xl27 width=349>upper-Gamma Proteobacteria orphan</td>
942     </tr>
943     <tr height=21>
944      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
945      <td class=xl35 width=261><a
946      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Microbulbifer%20%20degradans"><span
947      style='font-style:italic'>Microbulbifer degradans</span></a></td>
948    <td class=xl27 width=85>Mdeg<a name=Mdeg></a></td>
949      <td class=xl26 width=167><a
950      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203122.1.peg.1111">fig|203122.1.peg.1111</a></td>
951      <td class=xl26 width=100><a
952      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=90021791">90021791<font
953      class=font10>*</font></a></td>
954      <td class=xl27 width=349>upper-Gamma Proteobacteria orphan</td>
955     </tr>
956     <tr height=21>
957      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
958      <td class=xl35 width=261><a
959      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosococcus%20%20oceani"><span
960      style='font-style:italic'>Nitrosococcus oceani</span></a></td>
961    <td class=xl27 width=85>Noce<a name=Noce></a></td>
962      <td class=xl36><a
963      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C323261.3.peg.7">fig|323261.3.peg.7</a></td>
964      <td class=xl26 width=100><a
965      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77163714">77163714<font
966      class=font10>*</font></a></td>
967      <td class=xl27 width=349>upper-Gamma Proteobacteria orphan</td>
968     </tr>
969     <tr height=21>
970      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
971      <td class=xl35 width=261><a
972      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pelagibacter%20%20ubique"><span
973      style='font-style:italic'>Pelagibacter ubique<font class=font11><sup>d</sup></font></span></a></td>
974    <td class=xl27 width=85>Pubi<a name=Pubi></a></td>
975      <td class=xl26 width=167><a
976      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C335992.3.peg.1115">fig|335992.3.peg.1115</a></td>
977      <td class=xl26 width=100><a
978      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71082920">71082920<font
979      class=font10>*</font></a></td>
980      <td class=xl27 width=349>Alphaproteobacteria orphan</td>
981     </tr>
982     <tr height=21>
983      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
984      <td class=xl37><a
985      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Symbiobacterium%20%20thermophilum"><span
986      style='font-style:italic'>Symbiobacterium thermophilum</span></a></td>
987    <td class=xl27 width=85>Sthe<a name=Sthe></a></td>
988      <td class=xl26 width=167><a
989      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292459.1.peg.1361">fig|292459.1.peg.1361</a></td>
990      <td class=xl26 width=100><a
991      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=51856245">51856245<font
992      class=font10>*</font></a></td>
993      <td class=xl27 width=349>Firmicutes orphan</td>
994     </tr>
995     <tr height=21>
996      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font15>&#946;</font></td>
997      <td class=xl35 width=261><a
998      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophobacter%20%20fumaroxidans"><span
999      style='font-style:italic'>Syntrophobacter fumaroxidans</span></a></td>
1000    <td class=xl27 width=85>Sfum_1<a name=Sfum_1></a></td>
1001      <td class=xl36><a
1002      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%335543.6.peg.3883">fig|335543.6.peg.3883</a></td>
1003      <td class=xl26 width=100><a
1004      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71548230">71548230<font
1005      class=font10>*</font></a></td>
1006      <td class=xl27 width=349>Syntrophobacterales<font class=font6> </font><font
1007      class=font5>orphan</font></td>
1008     </tr>
1009     <tr height=21>
1010      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
1011      <td class=xl35 width=261><a
1012      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophomonas%20%20wolfei"><span
1013      style='font-style:italic'>Syntrophomonas wolfei</span></a></td>
1014    <td class=xl27 width=85>Swol_1<a name=Swol_1></a></td>
1015      <td class=xl42 width=167>NA</td>
1016      <td class=xl26 width=100><a
1017      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114566874">114566874<font
1018      class=font10>*</font></a></td>
1019      <td class=xl27 width=349>Clostridia orphan</td>
1020     </tr>
1021     <tr height=21>
1022      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font15>&#946;</font></td>
1023      <td class=xl35 width=261><a
1024      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermodesulfobacterium%20%20commune"><span
1025      style='font-style:italic'>Thermodesulfobacterium commune</span></a></td>
1026    <td class=xl27 width=85>Tcom<a name=Tcom></a></td>
1027      <td class=xl41 width=167>NA</td>
1028      <td class=xl27 width=100>NA</td>
1029      <td class=xl27 width=349>Thermodesulfobacteria orphan</td>
1030     </tr>
1031     <tr height=21>
1032      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
1033      <td class=xl35 width=261><a
1034      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermotoga%20%20maritima"><span
1035      style='font-style:italic'>Thermotoga maritima</span></a></td>
1036    <td class=xl27 width=85>Tmar<a name=Tmar></a></td>
1037      <td class=xl26 width=167><a
1038      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243274.1.peg.339">fig|243274.1.peg.339</a></td>
1039      <td class=xl26 width=100><a
1040      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15643112">15643112<font
1041      class=font10>*</font></a></td>
1042      <td class=xl27 width=349>Thermotogae orphan</td>
1043     </tr>
1044     <tr height=21>
1045      <td height=21 class=xl25 width=83>TyrCG-O    <font class=font14>&#945;</font></td>
1046      <td class=xl35 width=261><a
1047      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thiobacillus%20%20denitrificans"><span
1048      style='font-style:italic'>Thiobacillus denitrificans</span></a></td>
1049    <td class=xl27 width=85>Tden<a name=Tden></a></td>
1050      <td class=xl26 width=167><a
1051      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292415.3.peg.543">fig|292415.3.peg.543</a></td>
1052      <td class=xl26 width=100><a
1053      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=74316971">74316971<font
1054      class=font10>*</font></a></td>
1055      <td class=xl27 width=349>Betaproteobacteria orphan</td>
1056     </tr>
1057     <tr height=21>
1058      <td height=21 class=xl25 width=83>TyrCG-80   <font class=font15>&#946;</font></td>
1059      <td class=xl35 width=261><a
1060      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanococcoides%20%20burtonii"><span
1061      style='font-style:italic'>Methanococcoides burtonii</span></a></td>
1062    <td class=xl27 width=85>Mbur<a name=Mbur></a></td>
1063      <td class=xl26 width=167><a
1064      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259564.1.peg.2246">fig|259564.1.peg.2246</a></td>
1065      <td class=xl26 width=100><a
1066      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91773934">91773934<font
1067      class=font10>*</font></a></td>
1068      <td class=xl27 width=349>Euryarchaea Phylum</td>
1069     </tr>
1070     <tr height=21>
1071      <td height=21 class=xl25 width=83>TyrCG-81   <font class=font15>&#946;</font></td>
1072      <td class=xl35 width=261><a
1073      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Haloarcula%20%20marismortui"><span
1074      style='font-style:italic'>Haloarcula marismortui</span></a></td>
1075    <td class=xl27 width=85>Hmar_2<a name=Hmar_2></a></td>
1076      <td class=xl26 width=167><a
1077      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C272569.1.peg.498">fig|272569.1.peg.498</a></td>
1078      <td class=xl26 width=100><a
1079      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=55377389">55377389<font
1080      class=font10>*</font></a></td>
1081      <td class=xl27 width=349>Halobacteria Class </td>
1082     </tr>
1083     <tr height=21>
1084      <td height=21 class=xl25 width=83>TyrCG-82   <font class=font15>&#946;</font></td>
1085      <td class=xl35 width=261><a
1086      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Ferroplasma%20%20acidarmanus"><span
1087      style='font-style:italic'>Ferroplasma acidarmanus</span></a></td>
1088    <td class=xl27 width=85>Faci_1<a name=Faci_1></a></td>
1089      <td class=xl26 width=167><a
1090      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C97393.1.peg.324">fig|97393.1.peg.324</a></td>
1091      <td class=xl26 width=100><a
1092      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=68141176">68141176<font
1093      class=font10>*</font></a></td>
1094      <td class=xl27 width=349>Thermoplasmata Class</td>
1095     </tr>
1096     <tr height=21>
1097      <td height=21 class=xl25 width=83>TyrCG-83   <font class=font15>&#946;</font></td>
1098      <td class=xl35 width=261><a
1099      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanospirillum%20%20hungatei"><span
1100      style='font-style:italic'>Methanospirillum hungatei</span></a></td>
1101    <td class=xl27 width=85>Mhun<a name=Mhun></a></td>
1102      <td class=xl36><a
1103      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%323259.5.peg.1087">fig|323259.5.peg.1087</a></td>
1104      <td class=xl26 width=100><a
1105      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=88602324">88602324<font
1106      class=font10>*</font></a></td>
1107      <td class=xl27 width=349>Methanomicrobia Class</td>
1108     </tr>
1109     <tr height=21>
1110      <td height=21 class=xl25 width=83>TyrCG-84   <font class=font15>&#946;</font></td>
1111      <td class=xl35 width=261><a
1112      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Sulfolobus%20%20solfataricus"><span
1113      style='font-style:italic'>Sulfolobus solfataricus</span></a></td>
1114    <td class=xl27 width=85>Ssol<a name=Ssol></a></td>
1115      <td class=xl43 width=167><a
1116      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273057.1.peg.273">fig|273057.1.peg.273</a></td>
1117      <td class=xl26 width=100><a
1118      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15897245">15897245<font
1119      class=font10>*</font></a></td>
1120      <td class=xl27 width=349>Sulfolobales Order</td>
1121     </tr>
1122     <tr height=21>
1123      <td height=21 class=xl25 width=83>TyrCG-85   <font class=font15>&#946;</font></td>
1124      <td class=xl35 width=261><a
1125      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pyrobaculum%20%20aerophilum"><span
1126      style='font-style:italic'>Pyrobaculum aerophilum</span></a></td>
1127    <td class=xl27 width=85>Paer_2<a name=Paer_2></a></td>
1128      <td class=xl26 width=167><a
1129      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C178306.1.peg.1339">fig|178306.1.peg.1339</a></td>
1130      <td class=xl26 width=100><a
1131      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=18312982">18312982<font
1132      class=font10>*</font></a></td>
1133      <td class=xl45>Unresolved phylogenetic mixture</td>
1134     </tr>
1135     <tr height=21>
1136      <td height=21 class=xl25 width=83>TyrCG-86   <font class=font15>&#946;</font></td>
1137      <td class=xl35 width=261><a
1138      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Archaeoglobus%20%20fulgidus"><span
1139      style='font-style:italic'>Archaeoglobus fulgidus</span></a></td>
1140    <td class=xl27 width=85>Aful_1<a name=Aful_1></a></td>
1141      <td class=xl26 width=167><a
1142      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224325.1.peg.224">fig|224325.1.peg.224</a></td>
1143      <td class=xl26 width=100><a
1144      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=11497843">11497843<font
1145      class=font10>*</font></a></td>
1146      <td class=xl40>Unresolved phylogenetic mixture</td>
1147     </tr>
1148     <tr height=21>
1149      <td height=21 class=xl25 width=83>TyrCG-95   <font class=font15>&#946;</font></td>
1150      <td class=xl35 width=261><a
1151      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Arabidopsis%20%20thaliana"><span
1152      style='font-style:italic'>Arabidopsis thaliana</span></a></td>
1153    <td class=xl27 width=85>1Atha<a name=1Atha></a></td>
1154      <td class=xl26 width=167><a
1155      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C3702.1.peg.1877">fig|3702.1.peg.1877</a></td>
1156      <td class=xl26 width=100><a
1157      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15218283">15218283<font
1158      class=font10>*</font></a></td>
1159      <td class=xl27 width=349>Viridiplantae Kingdom</td>
1160     </tr>
1161     <tr height=21>
1162      <td height=21 class=xl25 width=83>TyrCG-98   <font class=font15>&#946;</font></td>
1163      <td class=xl35 width=261><a
1164      href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Saccharomyces%20%20cerevisiae"><span
1165      style='font-style:italic'>Saccharomyces cerevisiae</span></a></td>
1166    <td class=xl27 width=85>Scer<a name=Scer></a></td>
1167      <td class=xl26 width=167><a
1168      href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C4932.3.peg.431">fig|4932.3.peg.431</a></td>
1169      <td class=xl26 width=100><a
1170      href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6319643">6319643<font
1171      class=font10>*</font></a></td>
1172      <td class=xl27 width=349>Fungi Kingdom</td>
1173     </tr>
1174     <tr height=21>
1175      <td colspan=5 height=21 class=xl55>&#945;<font class=font5> for cohesion
1176      groups that belong to the TyrA&#945; sub-homology group as shown in the TyrA CG tree.</font></td>
1177      <td class=xl47 width=120><a
1178      href="../Html/tyrACGTree.html"><span
1179      style='text-decoration:underline;text-underline-style:single'>TyrA tree</span></a></td>
1180      <td class=xl44 width=349></td>
1181     </tr>
1182     <tr height=21>
1183      <td colspan=5 height=21> <font class=font15>&#946;</font><font class=font9> </font><font
1184      class=font5>for cohesion groups that belong to the TyrA&#946; sub-homology
1185      group as shown in the </font><font class=font9> </font><font class=font5>TyrA CG tree.</font></td>
1186      <td class=xl48><a
1187      href="../Html/tyrACGTree.html"><span
1188      style='text-decoration:underline;text-underline-style:single'>TyrA tree</span></a></td>
1189      <td></td>
1190     </tr>
1191     <tr height=21>
1192      <td colspan=4 height=21 class=xl55></td>
1193      <td></td>
1194      <td></td>
1195     </tr>
1196     <tr class=xl32 height=21>
1197      <td colspan=6 height=21 class=xl51><sup>a</sup><font class=font5>Organism
1198      acronyms consist of four letters:  the first letter of the genus name
1199      followed by the first three letters of the species name.  Any
1200      underscore-number designations that follow the acronym
1201    
1202      proper are used to  distinguish
1203      potential ambiguities,  multiple TyrA species  in a single  organism are
1204      distinguished by numbers  preceding the acronym  (as implemented at
1205      <a href="http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html">
1206         AroPath</a>).
1207    </font></td> </tr>
1208     <tr height=21>
1209      <td height=21 class=xl29></td>
1210      <td class=xl34></td>
1211      <td class=xl34></td>
1212      <td class=xl34></td>
1213      <td></td>
1214      <td></td>
1215     </tr>
1216     <tr height=21>
1217      <td colspan=5 height=21 class=xl50><sup>b</sup><font class=font5>Gene
1218      identification number. A red asterisk indicates that sequencing of the genome
1219      is essentially complete.</font></td>
1220      <td></td>
1221     </tr>
1222     <tr height=21>
1223      <td height=21 class=xl28><sup></sup></td>
1224      <td></td>
1225      <td></td>
1226      <td></td>
1227      <td></td>
1228      <td></td>
1229     </tr>
1230     <tr height=21>
1231      <td colspan=6 height=21 class=xl51><sup>c</sup><font class=font5>An  attempt
1232      is made to describe each  cohesion group at the hierarchical  level at which
1233      all organisms  having the sequence  occupy the same taxon.      NCBI’s
1234      taxonomy  page is used as a
1235    
1236      resource for this.  Typically,
1237      cohesion groups gather at about the level of Family or Class,  but wide
1238      deviations occur in either direction (see text).    In our treatment,
1239      Gammaptoteobacteria
1240      are clearly divided into two groups,
1241      with  lower-Gammaproteobacteria and upper-Gammaproteobacteria
1242      being the equivalent of "Superorder" taxon designation.   Thus, for example, the
1243      Betaproteobacteria  (a formal class)
1244      partition into five cohesion groups which do not correspond to formal taxon
1245      subdivisions.  The organism names and gi numbers are hyper-linked to the
1246      Taxonomy Browser at NCBI, the fig/peg
1247      numbers are hyperlinked to Protein Pages at the SEED.
1248     </font></td> </tr>
1249     <tr height=21>
1250      <td height=21 class=xl33></td>
1251      <td></td>
1252      <td></td>
1253      <td></td>
1254      <td></td>
1255      <td></td>
1256     </tr>
1257     <tr height=21>
1258      <td colspan=6 height=21 class=xl50><sup>d</sup><font class=font8>Pelagibacter
1259      ubique</font><font class=font5> is labeled as Candidatus </font><font
1260      class=font8>Pelagibacter ubique</font><font class=font5> in many databases.
1261      (“Candidatus” refers to an organism that cannot be maintained in a culture
1262      collection.)  </font></td>
1263     </tr>
1264    </table>
1265    
1266    </body>
1267    
1268    </html>
1269    

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