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 {font-size:12.0pt;        font-family:"Times New Roman", serif;        vertical-align:top;} .xl48        {color:#0000D4;        font-size:12.0pt;        font-family:"Times New Roman", serif;        text-align:justify;        vertical-align:top;} .xl49        {color:#0000D4;        font-size:12.0pt;        font-family:"Times New Roman", serif;        vertical-align:top;} --> </style> </head> <body link="#0000d4" vlink=purple> <table border=0 cellpadding=0 cellspacing=0 width=1316 style='border-collapse: collapse;table-layout:fixed'> <col width=140> <col width=257> <col width=140> <col width=195> <col width=114> <col width=470> <col width=53 span=250> <tr height=21>  <td height=21 class=xl24 colspan=2 width=397>Table 1.  Representative TyrA  sequences for 58 cohesion groups  <font class=font5> </font></td>  <td width=140></td>  <td width=195></td>  <td width=114></td>  <td width=470></td> </tr> <tr height=16>  <td height=16 class=xl24></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=36>  <td height=36 class=xl31 width=140>Cohesion group</td>  <td class=xl31 width=257>Source of TyrA sequence</td>  <td class=xl31 width=140>Acronym<font class=font7><sup>a</sup></font></td>  <td class=xl32 width=195>SEED: fig &amp; peg number</td>  <td class=xl32 width=114>gi number<font class=font7><sup>b</sup></font></td>  <td class=xl31 width=470>Taxon group<font class=font7><sup>c</sup></font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-1</td>  <td class=xl37 width=257><a name=Ecar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Erwinia%20carotovora"><span  style='font-style:italic'>Erwinia carotovora</span></a></td>  <td class=xl27 width=140>Ecar</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C218491.3.peg.2590">fig|218491.3.peg.2590</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=50122273">50122273*</a></td>  <td class=xl27 width=470>lower-Gammaproteobacteria (“class”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-2</td>  <td class=xl37 width=257><a name=Pput  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pseudomonas%20putida"><span  style='font-style:italic'>Pseudomonas putida</span></a></td>  <td class=xl27 width=140>Pput</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C160488.1.peg.1756">fig|160488.1.peg.1756</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=26988501">26988501<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-3</td>  <td class=xl39><a name=PSYC  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Psychrobacter%20"><span  style='font-style:italic'>Psychrobacter <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>PSYC</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259536.4.peg.787">fig|259536.4.peg.787</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71038727">71038727<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-4</td>  <td class=xl37 width=257><a name=Xcam  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Xanthomonas%20campestris"><span  style='font-style:italic'>Xanthomonas campestris</span></a></td>  <td class=xl27 width=140>Xcam</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C190485.1.peg.1454">fig|190485.1.peg.1454</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21230932">21230932<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_3proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-5</td>  <td class=xl37 width=257><a name=Aehr  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Alkalilimnicola%20ehrlichei"><span  style='font-style:italic'>Alkalilimnicola ehrlichei</span></a></td>  <td class=xl27 width=140>Aehr</td>  <td class=xl43 width=195>NA</td>  <td class=xl41><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114320089">114320089</a></td>  <td class=xl27 width=470>upper-Gamma_4proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-6</td>  <td class=xl37 width=257><a name=Maqu  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Marinobacter%20aquaeolei"><span  style='font-style:italic'>Marinobacter aquaeolei</span></a></td>  <td class=xl27 width=140>Maqu</td>  <td class=xl43 width=195>NA</td>  <td class=xl40 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77952716">77952716</a></td>  <td class=xl27 width=470>upper-Gamma_5proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-7</td>  <td class=xl37 width=257><a name=Bxen  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Burkholderia%20xenovorans"><span  style='font-style:italic'>Burkholderia xenovorans</span></a></td>  <td class=xl27 width=140>Bxen</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C36873.1.peg.4890">fig|36873.1.peg.4890</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91784814">91784814<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-8</td>  <td class=xl37 width=257><a name=Bper_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bordetella%20pertussis"><span  style='font-style:italic'>Bordetella pertussis</span></a></td>  <td class=xl27 width=140>Bper_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C257313.1.peg.827">fig|257313.1.peg.827</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=33592104">33592104<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-9</td>  <td class=xl37 width=257><a name=Ngon  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Neisseria%20gonorrhoeae"><span  style='font-style:italic'>Neisseria gonorrhoeae</span></a></td>  <td class=xl27 width=140>Ngon</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C242231.4.peg.1532">fig|242231.4.peg.1532</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=59801853">59801853<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_3proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-10</td>  <td class=xl37 width=257><a name=POLA  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Polaromonas%20"><span  style='font-style:italic'>Polaromonas <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>POLA</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C296591.1.peg.2815">fig|296591.1.peg.2815</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91787673">91787673<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_4proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-11</td>  <td class=xl37 width=257><a name=Neur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosomonas%20europaea"><span  style='font-style:italic'>Nitrosomonas europaea</span></a></td>  <td class=xl27 width=140>Neur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C228410.1.peg.323">fig|228410.1.peg.323</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=30248354">30248354<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_5proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-12</td>  <td class=xl37 width=257><a name=Bhen  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bartonella%20henselae"><span  style='font-style:italic'>Bartonella henselae</span></a></td>  <td class=xl27 width=140>Bhen</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C283166.1.peg.1442">fig|283166.1.peg.1442</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=49476273">49476273<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alpha_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-13</td>  <td class=xl37 width=257><a name=Wsuc  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Wolinella%20succinogenes"><span  style='font-style:italic'>Wolinella succinogenes</span></a></td>  <td class=xl27 width=140>Wsuc</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273121.1.peg.325">fig|273121.1.peg.325</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34482497">34482497<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Epsilonproteobacteria (Class)/Flavobacteria (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-14</td>  <td class=xl37 width=257><a name=Gsul  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Geobacter%20%20sulfurreducens"><span  style='font-style:italic'>Geobacter sulfurreducens</span></a></td>  <td class=xl27 width=140>Gsul</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243231.1.peg.2590">fig|243231.1.peg.2590</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=39997701">39997701<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Desulfuromonadales (Order)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-15</td>  <td class=xl39><a name=Ddes  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfovibrio%20%20desulfuricans"><span  style='font-style:italic'>Desulfovibrio desulfuricans</span></a></td>  <td class=xl27 width=140>Ddes</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C207559.3.peg.3693">fig|207559.3.peg.3693</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=78358524">78358524<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Desulfovibrionales (Order)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-16</td>  <td class=xl37 width=257><a name=SYNE_3  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Synechosystis"  target="_blank"><span style='font-style:italic'>Synechocystis <font  class=font9>sp.</font><font class=font13> </font></span></a></td>  <td class=xl27 width=140>SYNE_3</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1148.1.peg.1391">fig|1148.1.peg.1391</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=16330562">16330562<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Cyanobacteria (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-17</td>  <td class=xl37 width=257><a name=Tfus  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermobifida%20%20fusca"><span  style='font-style:italic'>Thermobifida fusca</span></a></td>  <td class=xl27 width=140>Tfus</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C269800.4.peg.764">fig|269800.4.peg.764</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=72161612">72161612<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Actinobacteridae (Subclass)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-18</td>  <td class=xl37 width=257><a name=Lpla  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Lactobacillus%20plantarum"  target="_blank"><span style='font-style:italic'>Lactobacillus plantarum</span></a></td>  <td class=xl27 width=140>Lpla</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C220668.1.peg.1693">fig|220668.1.peg.1693</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=28271503">28271503<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Bacilli (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-19</td>  <td class=xl37 width=257><a name=Cdif  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20difficile"><span  style='font-style:italic'>Clostridium difficile</span></a></td>  <td class=xl27 width=140>Cdif</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1496.1.peg.2965">fig|1496.1.peg.2965</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=115250885">115250885<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_1 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-20</td>  <td class=xl37 width=257><a name=Cthe_5  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20thermocellum"><span  style='font-style:italic'>Clostridium thermocellum</span></a></td>  <td class=xl27 width=140>Cthe_5</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203119.1.peg.2939">fig|203119.1.peg.2939</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=67874921">67874921<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_2 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-21</td>  <td class=xl37 width=257><a name=Mthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Moorella%20%20thermoacetica"><span  style='font-style:italic'>Moorella thermoacetica</span></a></td>  <td class=xl27 width=140>Mthe_3</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C264732.1.peg.2464">fig|264732.1.peg.2464</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=83590180&amp;dopt=GenPept"  target="_blank">83590180<font class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_3 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-22</td>  <td class=xl37 width=257><a name=Drad  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Deinococcus%20%20radiodurans"><span  style='font-style:italic'>Deinococcus radiodurans</span></a></td>  <td class=xl27 width=140>Drad</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243230.1.peg.1305">fig|243230.1.peg.1305</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6458858">6458858<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Deinococci (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-23</td>  <td class=xl37 width=257><a name=Bthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bacteroides%20%20thetaiotaomicron"><span  style='font-style:italic'>Bacteroides thetaiotaomicron</span></a></td>  <td class=xl27 width=140>Bthe_9</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C226186.1.peg.3931">fig|226186.1.peg.3931</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29341249">29341249<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Bacteroidetes (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-24</td>  <td class=xl37 width=257><a name=Ctep  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chlorobium%20%20tepidum"><span  style='font-style:italic'>Chlorobium tepidum</span></a></td>  <td class=xl27 width=140>Ctep</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C194439.1.peg.84">fig|194439.1.peg.84</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21672925">21672925<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Chlorobia (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-25</td>  <td class=xl37 width=257><a name=Pmio  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Petrotoga%20%20miotherma"><span  style='font-style:italic'>Petrotoga miotherma</span></a></td>  <td class=xl27 width=140>Pmio</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Phylogenetic mixture: Petrotoga (Genus) &amp;<font  class=font6> </font><font class=font5>Dictyoglomi  (Class) </font></td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-26</td>  <td class=xl37 width=257><a name=Cbur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Coxiella%20%20burnetii"><span  style='font-style:italic'>Coxiella burnetii</span></a></td>  <td class=xl27 width=140>Cbur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C227377.1.peg.935">fig|227377.1.peg.935</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29654299">29654299<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: upper-Gammaproteobacteria  (“subclass”) &amp; Sphingobacteria (Class) &amp; Alphaproteobacteria (Class)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-27</td>  <td class=xl37 width=257><a name=Rbal  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodopirellula%20%20baltica"><span  style='font-style:italic'>Rhodopirellula baltica <font class=font9>(</font><font  class=font13>Pirellula </font><font class=font9>sp.)</font></span></a></td>  <td class=xl27 width=140>Rbal</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243090.1.peg.3009">fig|243090.1.peg.3009</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=32473675">32473675<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Planctomycetaceae (Family)  &amp; Myxococcales (Order) &amp; Verrucomicrobia (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-28</td>  <td class=xl37 width=257><a name=Lint_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Leptospira%20%20interrogans"><span  style='font-style:italic'>Leptospira interrogans</span></a></td>  <td class=xl27 width=140>Lint_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C267671.1.peg.2379">fig|267671.1.peg.2379</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=45658293">45658293<font  class=font10>*</font></a></td>  <td class=xl34>Phylogenetic mixture: Spirochaetes (Phylum) &amp;  Fibrobacteres (Phylum) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-29</td>  <td class=xl37 width=257><a name=Deth  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dehalococcoides%20%20ethenogenes"><span  style='font-style:italic'>Dehalococcoides ethenogenes </span></a></td>  <td class=xl27 width=140>Deth</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243164.3.peg.722">fig|243164.3.peg.722</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=57234714">57234714<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Chloroflexi (Phylum) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-30</td>  <td class=xl37 width=257><a name=2Rrub_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodospirillum%20rubrum"  target="_blank"><span style='font-style:italic'>Rhodospirillum rubrum</span></a></td>  <td class=xl27 width=140>2Rrub_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1085.1.peg.3401">fig|1085.1.peg.3401</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=83592308">83592308<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alpha_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-31</td>  <td class=xl37 width=257><a name=Gobs  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Gemmata%20%20obscuriglobus"><span  style='font-style:italic'>Gemmata obscuriglobus</span></a></td>  <td class=xl27 width=140>Gobs</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Planctomyceteceae (Family)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Afer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Acidithiobacillus%20%20ferrooxidans"><span  style='font-style:italic'>Acidithiobacillus ferrooxidans</span></a></td>  <td class=xl27 width=140>Afer_4</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>upper-Gammaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Aaeo  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Aquifex%20%20aeolicus"><span  style='font-style:italic'>Aquifex aeolicus</span></a></td>  <td class=xl27 width=140>Aaeo</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224324.1.peg.1217">fig|224324.1.peg.1217</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15606822">15606822<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Aquificae (Phylum) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=AZOA  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Azoarcus%20%20"><span  style='font-style:italic'>Azoarcus <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>AZOA</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C76114.4.peg.1423">fig|76114.4.peg.1423</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=56475924">56475924<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Cvio  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chromobacterium%20%20violaceum"><span  style='font-style:italic'>Chromobacterium violaceum</span></a></td>  <td class=xl27 width=140>Cvio</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243365.1.peg.3407">fig|243365.1.peg.3407</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34498862">34498862<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Daro  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dechloromonas%20%20aromatica"><span  style='font-style:italic'>Dechloromonas aromatica</span></a></td>  <td class=xl27 width=140>Daro</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C159087.4.peg.933">fig|159087.4.peg.933</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71906873">71906873<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Dhaf  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfitobacterium%20%20hafniense"><span  style='font-style:italic'>Desulfitobacterium hafniense</span></a></td>  <td class=xl27 width=140>Dhaf</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C49338.1.peg.2227">fig|49338.1.peg.2227</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=89334457">89334457<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia<font class=font6> </font><font  class=font5>(“subclass”) orphan</font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=MAGN_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Magnetococcus%20%20"><span  style='font-style:italic'>Magnetococcus <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>MAGN_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C156889.1.peg.1669">fig|156889.1.peg.1669</a></td>  <td class=xl42>NA</td>  <td class=xl27 width=470>Unclassified Proteobacteria orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mfla  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylobacillus%20%20flagellatus"><span  style='font-style:italic'>Methylobacillus flagellatus</span></a></td>  <td class=xl27 width=140>Mfla_5</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C265072.1.peg.206">fig|265072.1.peg.206</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91775427">91775427<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mcap_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylococcus%20%20capsulatus"><span  style='font-style:italic'>Methylococcus capsulatus</span></a></td>  <td class=xl27 width=140>Mcap_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243233.4.peg.782">fig|243233.4.peg.782</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=53804254">53804254<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mdeg  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Microbulbifer%20%20degradans"><span  style='font-style:italic'>Microbulbifer degradans</span></a></td>  <td class=xl27 width=140>Mdeg</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203122.1.peg.1111">fig|203122.1.peg.1111</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=90021791">90021791<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Noce  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosococcus%20%20oceani"><span  style='font-style:italic'>Nitrosococcus oceani</span></a></td>  <td class=xl27 width=140>Noce</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C323261.3.peg.7">fig|323261.3.peg.7</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77163714">77163714<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Pubi  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pelagibacter%20%20ubique"><span  style='font-style:italic'>Pelagibacter ubique<font class=font11><sup>d</sup></font></span></a></td>  <td class=xl27 width=140>Pubi</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C335992.3.peg.1115">fig|335992.3.peg.1115</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71082920">71082920<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alphaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl39><a name=Sthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Symbiobacterium%20%20thermophilum"><span  style='font-style:italic'>Symbiobacterium thermophilum</span></a></td>  <td class=xl27 width=140>Sthe</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292459.1.peg.1361">fig|292459.1.peg.1361</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=51856245">51856245<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Actinobacteria (Class) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Sfum  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophobacter%20%20fumaroxidans"><span  style='font-style:italic'>Syntrophobacter fumaroxidans</span></a></td>  <td class=xl27 width=140>Sfum_1</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71548230">71548230<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Syntrophobacterales<font class=font6> </font><font  class=font5>(Order) orphan</font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Swol  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophomonas%20%20wolfei"><span  style='font-style:italic'>Syntrophomonas wolfei</span></a></td>  <td class=xl27 width=140>Swol_1</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114566874">114566874<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tcom  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermodesulfobacterium%20%20commune"><span  style='font-style:italic'>Thermodesulfobacterium commune</span></a></td>  <td class=xl27 width=140>Tcom</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Thermodesulfobacteria (Phylum) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tmar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermotoga%20%20maritima"><span  style='font-style:italic'>Thermotoga maritima</span></a></td>  <td class=xl27 width=140>Tmar</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243274.1.peg.339">fig|243274.1.peg.339</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15643112">15643112<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Thermotogae (Genus) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tden  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thiobacillus%20%20denitrificans"><span  style='font-style:italic'>Thiobacillus denitrificans</span></a></td>  <td class=xl27 width=140>Tden</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292415.3.peg.543">fig|292415.3.peg.543</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=74316971">74316971<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-80</td>  <td class=xl37 width=257><a name=Mbur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanococcoides%20%20burtonii"><span  style='font-style:italic'>Methanococcoides burtonii</span></a></td>  <td class=xl27 width=140>Mbur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259564.1.peg.2246">fig|259564.1.peg.2246</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91773934">91773934<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Euryarchaea (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-81</td>  <td class=xl37 width=257><a name=Hmar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Haloarcula%20%20marismortui"><span  style='font-style:italic'>Haloarcula marismortui</span></a></td>  <td class=xl27 width=140>Hmar_2</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C272569.1.peg.498">fig|272569.1.peg.498</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=55377389">55377389<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Halobacteria (Class) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-82</td>  <td class=xl37 width=257><a name=Faci   href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Ferroplasma%20%20acidarmanus"><span  style='font-style:italic'>Ferroplasma acidarmanus</span></a></td>  <td class=xl27 width=140>Faci_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C97393.1.peg.324">fig|97393.1.peg.324</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=68141176">68141176<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Thermoplasmata (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-83</td>  <td class=xl37 width=257><a name=Mhun  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanospirillum%20%20hungatei"><span  style='font-style:italic'>Methanospirillum hungatei</span></a></td>  <td class=xl27 width=140>Mhun</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=88602324">88602324<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Methanomicrobia (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-84</td>  <td class=xl37 width=257><a name=Ssol  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Sulfolobus%20%20solfataricus"><span  style='font-style:italic'>Sulfolobus solfataricus</span></a></td>  <td class=xl27 width=140>Ssol</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273057.1.peg.273">fig|273057.1.peg.273</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15897245">15897245<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Sulfolobales (Order)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-85</td>  <td class=xl37 width=257><a name=Paer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pyrobaculum%20%20aerophilum"><span  style='font-style:italic'>Pyrobaculum aerophilum</span></a></td>  <td class=xl27 width=140>Paer_2</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C178306.1.peg.1339">fig|178306.1.peg.1339</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=18312982">18312982<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Thermoprotei (Class) &amp;  Thermococcaceae (Family)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-86</td>  <td class=xl37 width=257><a name=Aful  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Archaeoglobus%20%20fulgidus"><span  style='font-style:italic'>Archaeoglobus fulgidus</span></a></td>  <td class=xl27 width=140>Aful_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224325.1.peg.224">fig|224325.1.peg.224</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=11497843">11497843<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Archaeoglobi (Class) &amp;  Nanoarchaeota     (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-95</td>  <td class=xl37 width=257><a name=1Atha  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Arabidopsis%20%20thaliana"><span  style='font-style:italic'>Arabidopsis thaliana</span></a></td>  <td class=xl27 width=140>1Atha</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C3702.1.peg.1877">fig|3702.1.peg.1877</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15218283">15218283<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Viridiplantae (Kingdom)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-98</td>  <td class=xl37 width=257><a name=Scer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Saccharomyces%20%20cerevisiae"><span  style='font-style:italic'>Saccharomyces cerevisiae</span></a></td>  <td class=xl27 width=140>Scer</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C4932.3.peg.431">fig|4932.3.peg.431</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6319643">6319643<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Fungi (Kingdom)</td> </tr> <tr height=21>  <td height=21 class=xl28><sup></sup></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr class=xl33 height=21>  <td colspan=6 height=21 class=xl47><sup>a</sup><font class=font5>Organism  acronyms consist of four letters:  the first letter of the genus name  followed by the first three letters of the species name.  If  underscore/number designations follow the acronym  </font></td> </tr> <tr class=xl33 height=21>  <td colspan=6 height=21 class=xl44>    proper, these are used to distinguish  potential ambiguities as implemented at AroPath.   Multiple TyrA species in a  single organism are distinguished by numbers preceding the acronym.    . </td> </tr> <tr height=21>  <td colspan=4 height=21 class=xl48><a  href="http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html)">     http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html)</a></td>  <td></td>  <td></td> </tr> <tr height=21>  <td height=21 class=xl30></td>  <td class=xl36></td>  <td class=xl36></td>  <td class=xl36></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=5 height=21 class=xl46><sup>b</sup><font class=font5>Gene  identification number. A red asterisk indicates that sequencing of the genome  is essentially complete.</font></td>  <td></td> </tr> <tr height=21>  <td height=21 class=xl29><sup></sup></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl46><sup>c</sup><font class=font5>An attempt  is made to describe each cohesion group at the hierarchical level at which  all organisms having the sequence occupy the same taxon.      NCBI’s taxonomy  page is used as a  </font></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    resource for this.  Typically,  cohesion groups gather at about the level of Class, but wide deviations occur  in either direction (see text).  In our treatment, Gammaptoteobacteria can be</td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    thought of as the equivalent of a  Superclass, with lower-Gammaproteobacteria and upper-Gammaproteobacteria  being elevatd to the taxon level of Class.  The designation “subclass” </td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    indicates cohesion groups that  partition within a formal class.   Thus, for example, the Betaproteobacteria  (a formal class) partition into five cohesion groups which do not correspond  </td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    to formal taxon subdivisions.  For  detailed information the organism names are hyper-linked to the Taxonomy  Browser at NCBI.</td> </tr> <tr height=21>  <td height=21 class=xl35></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl46><sup>d</sup><font class=font8>Pelagibacter  ubique</font><font class=font5> is labeled as Candidatus </font><font  class=font8>Pelagibacter ubique</font><font class=font5> in many databases  (“Candidatus” refers to an organism that cannot be maintained in a culture  collection)  preceding </font></td> </tr> <tr height=21>  <td colspan=2 height=21 class=xl44>    the genus/species designation.</td>  <td class=xl33></td>  <td class=xl33></td>  <td class=xl33></td>  <td class=xl33></td> </tr> </table> </body> </html>  
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link="#0000d4" vlink=purple> <center> <table  cellspacing=2> <tr> <td bgcolor="lightblue"> <b><font size="+3" >The SEED: an Annotation/Analysis Tool Provided by <a href="FIG.html">FIG</a></font></b> <br> [ <a href="http://subsys.info">Subsystem Forum</a> | <a href="../eggs.cgi">Essentiality Data</a> | <a href="tutorials.html">FIG Tutorials</a> | <a href="../p2p/new_seed_update_page.cgi?user=">Peer-to-peer Updates</a> | <a href="../p2p/ch.cgi?user=">(New) Clearinghouse</a> | <a href="../seed_ctl.cgi?user=">SEED Control Panel</a> | <a href="http://www.nmpdr.org/">NMPDR</a> | <a href="http://www-unix.mcs.anl.gov/SEEDWiki/">SEED Wiki</a>] <br> [<a href="http://www.genomesonline.org/">GOLD</a> | <a href="CompleteSeedGenomes.html">"Complete" Genomes in SEED </a> | <a href="http://au.expasy.org/">ExPASy</a> | <a href="http://img.jgi.doe.gov/">IMG</a> | <a href="http://www.genome.jp/kegg/kegg2.html">KEGG</a> | <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a> | <a href="http://www.tigr.org/tigr-scripts/CMR2/CMRGenomes.spl">TIGR cmr</a> | <a href="http://www.pir.uniprot.org/">UniProt</a> | <a href="http://borrelia.ci.uchicago.edu/fogbugz">Report "Bugz"</a>] <br> <br> <td> <img src=seed-logo-green.png alt=seedlogo> </td> </tr> </table> </center> <center> <table border=0 cellpadding=0 cellspacing=0 width=1316 style='border-collapse: collapse;table-layout:fixed'> <col width=140> <col width=257> <col width=140> <col width=195> <col width=114> <col width=470> <col width=53 span=250> <tr height=21>  <td height=21 class=xl24 colspan=2 width=397>Table 1.  Representative TyrA  sequences for 58 cohesion groups  <font class=font5> </font></td>  <td width=140></td>  <td width=195></td>  <td width=114></td>  <td width=470></td> </tr> <tr height=16>  <td height=16 class=xl24></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=36>  <td height=36 class=xl31 width=140>Cohesion group</td>  <td class=xl31 width=257>Source of TyrA sequence</td>  <td class=xl31 width=140>Acronym<font class=font7><sup>a</sup></font></td>  <td class=xl32 width=195>SEED: fig &amp; peg number</td>  <td class=xl32 width=114>gi number<font class=font7><sup>b</sup></font></td>  <td class=xl31 width=470>Taxon group<font class=font7><sup>c</sup></font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-1</td>  <td class=xl37 width=257><a name=Ecar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Erwinia%20carotovora"><span  style='font-style:italic'>Erwinia carotovora</span></a></td>  <td class=xl27 width=140>Ecar</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C218491.3.peg.2590">fig|218491.3.peg.2590</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=50122273">50122273*</a></td>  <td class=xl27 width=470>lower-Gammaproteobacteria (“class”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-2</td>  <td class=xl37 width=257><a name=Pput  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pseudomonas%20putida"><span  style='font-style:italic'>Pseudomonas putida</span></a></td>  <td class=xl27 width=140>Pput</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C160488.1.peg.1756">fig|160488.1.peg.1756</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=26988501">26988501<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-3</td>  <td class=xl39><a name=PSYC  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Psychrobacter%20"><span  style='font-style:italic'>Psychrobacter <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>PSYC</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259536.4.peg.787">fig|259536.4.peg.787</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71038727">71038727<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-4</td>  <td class=xl37 width=257><a name=Xcam  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Xanthomonas%20campestris"><span  style='font-style:italic'>Xanthomonas campestris</span></a></td>  <td class=xl27 width=140>Xcam</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C190485.1.peg.1454">fig|190485.1.peg.1454</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21230932">21230932<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma_3proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-5</td>  <td class=xl37 width=257><a name=Aehr  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Alkalilimnicola%20ehrlichei"><span  style='font-style:italic'>Alkalilimnicola ehrlichei</span></a></td>  <td class=xl27 width=140>Aehr</td>  <td class=xl43 width=195>NA</td>  <td class=xl41><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114320089">114320089</a></td>  <td class=xl27 width=470>upper-Gamma_4proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-6</td>  <td class=xl37 width=257><a name=Maqu  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Marinobacter%20aquaeolei"><span  style='font-style:italic'>Marinobacter aquaeolei</span></a></td>  <td class=xl27 width=140>Maqu</td>  <td class=xl43 width=195>NA</td>  <td class=xl40 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77952716">77952716</a></td>  <td class=xl27 width=470>upper-Gamma_5proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-7</td>  <td class=xl37 width=257><a name=Bxen  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Burkholderia%20xenovorans"><span  style='font-style:italic'>Burkholderia xenovorans</span></a></td>  <td class=xl27 width=140>Bxen</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C36873.1.peg.4890">fig|36873.1.peg.4890</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91784814">91784814<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-8</td>  <td class=xl37 width=257><a name=Bper_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bordetella%20pertussis"><span  style='font-style:italic'>Bordetella pertussis</span></a></td>  <td class=xl27 width=140>Bper_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C257313.1.peg.827">fig|257313.1.peg.827</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=33592104">33592104<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-9</td>  <td class=xl37 width=257><a name=Ngon  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Neisseria%20gonorrhoeae"><span  style='font-style:italic'>Neisseria gonorrhoeae</span></a></td>  <td class=xl27 width=140>Ngon</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C242231.4.peg.1532">fig|242231.4.peg.1532</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=59801853">59801853<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_3proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-10</td>  <td class=xl37 width=257><a name=POLA  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Polaromonas%20"><span  style='font-style:italic'>Polaromonas <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>POLA</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C296591.1.peg.2815">fig|296591.1.peg.2815</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91787673">91787673<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_4proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-11</td>  <td class=xl37 width=257><a name=Neur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosomonas%20europaea"><span  style='font-style:italic'>Nitrosomonas europaea</span></a></td>  <td class=xl27 width=140>Neur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C228410.1.peg.323">fig|228410.1.peg.323</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=30248354">30248354<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Beta_5proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-12</td>  <td class=xl37 width=257><a name=Bhen  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bartonella%20henselae"><span  style='font-style:italic'>Bartonella henselae</span></a></td>  <td class=xl27 width=140>Bhen</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C283166.1.peg.1442">fig|283166.1.peg.1442</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=49476273">49476273<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alpha_1proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-13</td>  <td class=xl37 width=257><a name=Wsuc  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Wolinella%20succinogenes"><span  style='font-style:italic'>Wolinella succinogenes</span></a></td>  <td class=xl27 width=140>Wsuc</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273121.1.peg.325">fig|273121.1.peg.325</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34482497">34482497<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Epsilonproteobacteria (Class)/Flavobacteria (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-14</td>  <td class=xl37 width=257><a name=Gsul  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Geobacter%20%20sulfurreducens"><span  style='font-style:italic'>Geobacter sulfurreducens</span></a></td>  <td class=xl27 width=140>Gsul</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243231.1.peg.2590">fig|243231.1.peg.2590</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=39997701">39997701<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Desulfuromonadales (Order)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-15</td>  <td class=xl39><a name=Ddes  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfovibrio%20%20desulfuricans"><span  style='font-style:italic'>Desulfovibrio desulfuricans</span></a></td>  <td class=xl27 width=140>Ddes</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C207559.3.peg.3693">fig|207559.3.peg.3693</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=78358524">78358524<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Desulfovibrionales (Order)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-16</td>  <td class=xl37 width=257><a name=SYNE_3  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Synechosystis"  target="_blank"><span style='font-style:italic'>Synechocystis <font  class=font9>sp.</font><font class=font13> </font></span></a></td>  <td class=xl27 width=140>SYNE_3</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1148.1.peg.1391">fig|1148.1.peg.1391</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=16330562">16330562<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Cyanobacteria (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-17</td>  <td class=xl37 width=257><a name=Tfus  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermobifida%20%20fusca"><span  style='font-style:italic'>Thermobifida fusca</span></a></td>  <td class=xl27 width=140>Tfus</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C269800.4.peg.764">fig|269800.4.peg.764</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=72161612">72161612<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Actinobacteridae (Subclass)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-18</td>  <td class=xl37 width=257><a name=Lpla  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Lactobacillus%20plantarum"  target="_blank"><span style='font-style:italic'>Lactobacillus plantarum</span></a></td>  <td class=xl27 width=140>Lpla</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C220668.1.peg.1693">fig|220668.1.peg.1693</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=28271503">28271503<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Bacilli (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-19</td>  <td class=xl37 width=257><a name=Cdif  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20difficile"><span  style='font-style:italic'>Clostridium difficile</span></a></td>  <td class=xl27 width=140>Cdif</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1496.1.peg.2965">fig|1496.1.peg.2965</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=115250885">115250885<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_1 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-20</td>  <td class=xl37 width=257><a name=Cthe_5  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20%20thermocellum"><span  style='font-style:italic'>Clostridium thermocellum</span></a></td>  <td class=xl27 width=140>Cthe_5</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203119.1.peg.2939">fig|203119.1.peg.2939</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=67874921">67874921<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_2 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-21</td>  <td class=xl37 width=257><a name=Mthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Moorella%20%20thermoacetica"><span  style='font-style:italic'>Moorella thermoacetica</span></a></td>  <td class=xl27 width=140>Mthe_3</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C264732.1.peg.2464">fig|264732.1.peg.2464</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=83590180&amp;dopt=GenPept"  target="_blank">83590180<font class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia_3 (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-22</td>  <td class=xl37 width=257><a name=Drad  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Deinococcus%20%20radiodurans"><span  style='font-style:italic'>Deinococcus radiodurans</span></a></td>  <td class=xl27 width=140>Drad</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243230.1.peg.1305">fig|243230.1.peg.1305</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6458858">6458858<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Deinococci (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-23</td>  <td class=xl37 width=257><a name=Bthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bacteroides%20%20thetaiotaomicron"><span  style='font-style:italic'>Bacteroides thetaiotaomicron</span></a></td>  <td class=xl27 width=140>Bthe_9</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C226186.1.peg.3931">fig|226186.1.peg.3931</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29341249">29341249<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Bacteroidetes (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-24</td>  <td class=xl37 width=257><a name=Ctep  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chlorobium%20%20tepidum"><span  style='font-style:italic'>Chlorobium tepidum</span></a></td>  <td class=xl27 width=140>Ctep</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C194439.1.peg.84">fig|194439.1.peg.84</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=21672925">21672925<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Chlorobia (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-25</td>  <td class=xl37 width=257><a name=Pmio  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Petrotoga%20%20miotherma"><span  style='font-style:italic'>Petrotoga miotherma</span></a></td>  <td class=xl27 width=140>Pmio</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Phylogenetic mixture: Petrotoga (Genus) &amp;<font  class=font6> </font><font class=font5>Dictyoglomi  (Class) </font></td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-26</td>  <td class=xl37 width=257><a name=Cbur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Coxiella%20%20burnetii"><span  style='font-style:italic'>Coxiella burnetii</span></a></td>  <td class=xl27 width=140>Cbur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C227377.1.peg.935">fig|227377.1.peg.935</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29654299">29654299<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: upper-Gammaproteobacteria  (“subclass”) &amp; Sphingobacteria (Class) &amp; Alphaproteobacteria (Class)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-27</td>  <td class=xl37 width=257><a name=Rbal  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodopirellula%20%20baltica"><span  style='font-style:italic'>Rhodopirellula baltica <font class=font9>(</font><font  class=font13>Pirellula </font><font class=font9>sp.)</font></span></a></td>  <td class=xl27 width=140>Rbal</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243090.1.peg.3009">fig|243090.1.peg.3009</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=32473675">32473675<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Planctomycetaceae (Family)  &amp; Myxococcales (Order) &amp; Verrucomicrobia (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-28</td>  <td class=xl37 width=257><a name=Lint_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Leptospira%20%20interrogans"><span  style='font-style:italic'>Leptospira interrogans</span></a></td>  <td class=xl27 width=140>Lint_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C267671.1.peg.2379">fig|267671.1.peg.2379</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=45658293">45658293<font  class=font10>*</font></a></td>  <td class=xl34>Phylogenetic mixture: Spirochaetes (Phylum) &amp;  Fibrobacteres (Phylum) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-29</td>  <td class=xl37 width=257><a name=Deth  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dehalococcoides%20%20ethenogenes"><span  style='font-style:italic'>Dehalococcoides ethenogenes </span></a></td>  <td class=xl27 width=140>Deth</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243164.3.peg.722">fig|243164.3.peg.722</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=57234714">57234714<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Chloroflexi (Phylum) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-30</td>  <td class=xl37 width=257><a name=2Rrub_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodospirillum%20rubrum"  target="_blank"><span style='font-style:italic'>Rhodospirillum rubrum</span></a></td>  <td class=xl27 width=140>2Rrub_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C1085.1.peg.3401">fig|1085.1.peg.3401</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=83592308">83592308<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alpha_2proteobacteria (“subclass”)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-31</td>  <td class=xl37 width=257><a name=Gobs  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Gemmata%20%20obscuriglobus"><span  style='font-style:italic'>Gemmata obscuriglobus</span></a></td>  <td class=xl27 width=140>Gobs</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Planctomyceteceae (Family)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Afer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Acidithiobacillus%20%20ferrooxidans"><span  style='font-style:italic'>Acidithiobacillus ferrooxidans</span></a></td>  <td class=xl27 width=140>Afer_4</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>upper-Gammaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Aaeo  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Aquifex%20%20aeolicus"><span  style='font-style:italic'>Aquifex aeolicus</span></a></td>  <td class=xl27 width=140>Aaeo</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224324.1.peg.1217">fig|224324.1.peg.1217</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15606822">15606822<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Aquificae (Phylum) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=AZOA  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Azoarcus%20%20"><span  style='font-style:italic'>Azoarcus <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>AZOA</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C76114.4.peg.1423">fig|76114.4.peg.1423</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=56475924">56475924<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Cvio  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chromobacterium%20%20violaceum"><span  style='font-style:italic'>Chromobacterium violaceum</span></a></td>  <td class=xl27 width=140>Cvio</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243365.1.peg.3407">fig|243365.1.peg.3407</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=34498862">34498862<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Daro  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dechloromonas%20%20aromatica"><span  style='font-style:italic'>Dechloromonas aromatica</span></a></td>  <td class=xl27 width=140>Daro</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C159087.4.peg.933">fig|159087.4.peg.933</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71906873">71906873<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Dhaf  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfitobacterium%20%20hafniense"><span  style='font-style:italic'>Desulfitobacterium hafniense</span></a></td>  <td class=xl27 width=140>Dhaf</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C49338.1.peg.2227">fig|49338.1.peg.2227</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=89334457">89334457<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia<font class=font6> </font><font  class=font5>(“subclass”) orphan</font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=MAGN_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Magnetococcus%20%20"><span  style='font-style:italic'>Magnetococcus <font class=font9>sp.</font></span></a></td>  <td class=xl27 width=140>MAGN_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C156889.1.peg.1669">fig|156889.1.peg.1669</a></td>  <td class=xl42>NA</td>  <td class=xl27 width=470>Unclassified Proteobacteria orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mfla  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylobacillus%20%20flagellatus"><span  style='font-style:italic'>Methylobacillus flagellatus</span></a></td>  <td class=xl27 width=140>Mfla_5</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C265072.1.peg.206">fig|265072.1.peg.206</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91775427">91775427<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mcap_1  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylococcus%20%20capsulatus"><span  style='font-style:italic'>Methylococcus capsulatus</span></a></td>  <td class=xl27 width=140>Mcap_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243233.4.peg.782">fig|243233.4.peg.782</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=53804254">53804254<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Mdeg  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Microbulbifer%20%20degradans"><span  style='font-style:italic'>Microbulbifer degradans</span></a></td>  <td class=xl27 width=140>Mdeg</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C203122.1.peg.1111">fig|203122.1.peg.1111</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=90021791">90021791<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Noce  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosococcus%20%20oceani"><span  style='font-style:italic'>Nitrosococcus oceani</span></a></td>  <td class=xl27 width=140>Noce</td>  <td class=xl38><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C323261.3.peg.7">fig|323261.3.peg.7</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=77163714">77163714<font  class=font10>*</font></a></td>  <td class=xl27 width=470>upper-Gamma Proteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Pubi  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pelagibacter%20%20ubique"><span  style='font-style:italic'>Pelagibacter ubique<font class=font11><sup>d</sup></font></span></a></td>  <td class=xl27 width=140>Pubi</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C335992.3.peg.1115">fig|335992.3.peg.1115</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71082920">71082920<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Alphaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl39><a name=Sthe  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Symbiobacterium%20%20thermophilum"><span  style='font-style:italic'>Symbiobacterium thermophilum</span></a></td>  <td class=xl27 width=140>Sthe</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292459.1.peg.1361">fig|292459.1.peg.1361</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=51856245">51856245<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Actinobacteria (Class) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Sfum  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophobacter%20%20fumaroxidans"><span  style='font-style:italic'>Syntrophobacter fumaroxidans</span></a></td>  <td class=xl27 width=140>Sfum_1</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71548230">71548230<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Syntrophobacterales<font class=font6> </font><font  class=font5>(Order) orphan</font></td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Swol  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophomonas%20%20wolfei"><span  style='font-style:italic'>Syntrophomonas wolfei</span></a></td>  <td class=xl27 width=140>Swol_1</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114566874">114566874<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Clostridia (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tcom  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermodesulfobacterium%20%20commune"><span  style='font-style:italic'>Thermodesulfobacterium commune</span></a></td>  <td class=xl27 width=140>Tcom</td>  <td class=xl43 width=195>NA</td>  <td class=xl27 width=114>NA</td>  <td class=xl27 width=470>Thermodesulfobacteria (Phylum) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tmar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermotoga%20%20maritima"><span  style='font-style:italic'>Thermotoga maritima</span></a></td>  <td class=xl27 width=140>Tmar</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C243274.1.peg.339">fig|243274.1.peg.339</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15643112">15643112<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Thermotogae (Genus) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-O</td>  <td class=xl37 width=257><a name=Tden  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thiobacillus%20%20denitrificans"><span  style='font-style:italic'>Thiobacillus denitrificans</span></a></td>  <td class=xl27 width=140>Tden</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C292415.3.peg.543">fig|292415.3.peg.543</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=74316971">74316971<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Betaproteobacteria (“subclass”) orphan</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-80</td>  <td class=xl37 width=257><a name=Mbur  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanococcoides%20%20burtonii"><span  style='font-style:italic'>Methanococcoides burtonii</span></a></td>  <td class=xl27 width=140>Mbur</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C259564.1.peg.2246">fig|259564.1.peg.2246</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91773934">91773934<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Euryarchaea (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-81</td>  <td class=xl37 width=257><a name=Hmar  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Haloarcula%20%20marismortui"><span  style='font-style:italic'>Haloarcula marismortui</span></a></td>  <td class=xl27 width=140>Hmar_2</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C272569.1.peg.498">fig|272569.1.peg.498</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=55377389">55377389<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Halobacteria (Class) </td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-82</td>  <td class=xl37 width=257><a name=Faci   href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Ferroplasma%20%20acidarmanus"><span  style='font-style:italic'>Ferroplasma acidarmanus</span></a></td>  <td class=xl27 width=140>Faci_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C97393.1.peg.324">fig|97393.1.peg.324</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=68141176">68141176<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Thermoplasmata (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-83</td>  <td class=xl37 width=257><a name=Mhun  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanospirillum%20%20hungatei"><span  style='font-style:italic'>Methanospirillum hungatei</span></a></td>  <td class=xl27 width=140>Mhun</td>  <td class=xl43 width=195>NA</td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=88602324">88602324<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Methanomicrobia (Class)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-84</td>  <td class=xl37 width=257><a name=Ssol  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Sulfolobus%20%20solfataricus"><span  style='font-style:italic'>Sulfolobus solfataricus</span></a></td>  <td class=xl27 width=140>Ssol</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C273057.1.peg.273">fig|273057.1.peg.273</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15897245">15897245<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Sulfolobales (Order)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-85</td>  <td class=xl37 width=257><a name=Paer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pyrobaculum%20%20aerophilum"><span  style='font-style:italic'>Pyrobaculum aerophilum</span></a></td>  <td class=xl27 width=140>Paer_2</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C178306.1.peg.1339">fig|178306.1.peg.1339</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=18312982">18312982<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Thermoprotei (Class) &amp;  Thermococcaceae (Family)</td> </tr> <tr height=38>  <td height=38 class=xl25 width=140>TyrCG-86</td>  <td class=xl37 width=257><a name=Aful  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Archaeoglobus%20%20fulgidus"><span  style='font-style:italic'>Archaeoglobus fulgidus</span></a></td>  <td class=xl27 width=140>Aful_1</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C224325.1.peg.224">fig|224325.1.peg.224</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=11497843">11497843<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Phylogenetic mixture: Archaeoglobi (Class) &amp;  Nanoarchaeota     (Phylum)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-95</td>  <td class=xl37 width=257><a name=1Atha  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Arabidopsis%20%20thaliana"><span  style='font-style:italic'>Arabidopsis thaliana</span></a></td>  <td class=xl27 width=140>1Atha</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C3702.1.peg.1877">fig|3702.1.peg.1877</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15218283">15218283<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Viridiplantae (Kingdom)</td> </tr> <tr height=21>  <td height=21 class=xl25 width=140>TyrCG-98</td>  <td class=xl37 width=257><a name=Scer  href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Saccharomyces%20%20cerevisiae"><span  style='font-style:italic'>Saccharomyces cerevisiae</span></a></td>  <td class=xl27 width=140>Scer</td>  <td class=xl26 width=195><a  href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig%7C4932.3.peg.431">fig|4932.3.peg.431</a></td>  <td class=xl26 width=114><a  href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=6319643">6319643<font  class=font10>*</font></a></td>  <td class=xl27 width=470>Fungi (Kingdom)</td> </tr> <tr height=21>  <td height=21 class=xl28><sup></sup></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr class=xl33 height=21>  <td colspan=6 height=21 class=xl47><sup>a</sup><font class=font5>Organism  acronyms consist of four letters:  the first letter of the genus name  followed by the first three letters of the species name.  If  underscore/number designations follow the acronym  </font></td> </tr> <tr class=xl33 height=21>  <td colspan=6 height=21 class=xl44>    proper, these are used to distinguish  potential ambiguities as implemented at AroPath.   Multiple TyrA species in a  single organism are distinguished by numbers preceding the acronym.    . </td> </tr> <tr height=21>  <td colspan=4 height=21 class=xl48><a  href="http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html)">     http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html)</a></td>  <td></td>  <td></td> </tr> <tr height=21>  <td height=21 class=xl30></td>  <td class=xl36></td>  <td class=xl36></td>  <td class=xl36></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=5 height=21 class=xl46><sup>b</sup><font class=font5>Gene  identification number. A red asterisk indicates that sequencing of the genome  is essentially complete.</font></td>  <td></td> </tr> <tr height=21>  <td height=21 class=xl29><sup></sup></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl46><sup>c</sup><font class=font5>An attempt  is made to describe each cohesion group at the hierarchical level at which  all organisms having the sequence occupy the same taxon.      NCBI’s taxonomy  page is used as a  </font></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    resource for this.  Typically,  cohesion groups gather at about the level of Class, but wide deviations occur  in either direction (see text).  In our treatment, Gammaptoteobacteria can be</td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    thought of as the equivalent of a  Superclass, with lower-Gammaproteobacteria and upper-Gammaproteobacteria  being elevatd to the taxon level of Class.  The designation “subclass” </td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    indicates cohesion groups that  partition within a formal class.   Thus, for example, the Betaproteobacteria  (a formal class) partition into five cohesion groups which do not correspond  </td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl45>    to formal taxon subdivisions.  For  detailed information the organism names are hyper-linked to the Taxonomy  Browser at NCBI.</td> </tr> <tr height=21>  <td height=21 class=xl35></td>  <td></td>  <td></td>  <td></td>  <td></td>  <td></td> </tr> <tr height=21>  <td colspan=6 height=21 class=xl46><sup>d</sup><font class=font8>Pelagibacter  ubique</font><font class=font5> is labeled as Candidatus </font><font  class=font8>Pelagibacter ubique</font><font class=font5> in many databases  (“Candidatus” refers to an organism that cannot be maintained in a culture  collection)  preceding </font></td> </tr> <tr height=21>  <td colspan=2 height=21 class=xl44>    the genus/species designation.</td>  <td class=xl33></td>  <td class=xl33></td>  <td class=xl33></td>  <td class=xl33></td> </tr> </table> </body> </html>

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