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revision 1.1, Mon Dec 18 17:29:27 2006 UTC revision 1.2, Tue Feb 20 23:33:03 2007 UTC
# Line 7  Line 7 
7  <meta name=ProgId content=Word.Document>  <meta name=ProgId content=Word.Document>
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10  <link rel=File-List href="TyrA58_files/filelist.xml">  <link rel=File-List href="Orginal_TyrA58_files/filelist.xml">
11  <title>Cohesion Groups</title>  <title>Cohesion Groups</title>
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15    <o:Template>Normal</o:Template>    <o:Template>Normal</o:Template>
16    <o:LastAuthor>Carol Bonner</o:LastAuthor>    <o:LastAuthor>Carol Bonner</o:LastAuthor>
17    <o:Revision>2</o:Revision>    <o:Revision>2</o:Revision>
18    <o:TotalTime>225</o:TotalTime>    <o:TotalTime>406</o:TotalTime>
19    <o:Created>2006-11-18T10:01:00Z</o:Created>    <o:Created>2007-01-17T22:54:00Z</o:Created>
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24    <o:Company> Bioinformatic and Graphical Design</o:Company>    <o:Company> Bioinformatic and Graphical Design</o:Company>
25    <o:Lines>175</o:Lines>    <o:Lines>175</o:Lines>
26    <o:Paragraphs>49</o:Paragraphs>    <o:Paragraphs>49</o:Paragraphs>
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# Line 175  Line 175 
175  <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><span  <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><span
176  class=GramE><b style='mso-bidi-font-weight:normal'>Table 1.</b></span><b  class=GramE><b style='mso-bidi-font-weight:normal'>Table 1.</b></span><b
177  style='mso-bidi-font-weight:normal'> Representative <span class=SpellE>TyrA</span>  style='mso-bidi-font-weight:normal'> Representative <span class=SpellE>TyrA</span>
178  sequences for 58 Cohesion Groups</b> </p>  sequences for 58 cohesion groups</b> </p>
179    
180  <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><o:p>&nbsp;</o:p></p>  <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><o:p>&nbsp;</o:p></p>
181    
# Line 187  Line 187 
187    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
188    <p class=western align=center style='margin-bottom:0in;margin-bottom:.0001pt;    <p class=western align=center style='margin-bottom:0in;margin-bottom:.0001pt;
189    text-align:center'><b>Cohesion</b></p>    text-align:center'><b>Cohesion</b></p>
190    <p class=western align=center style='text-align:center'><b>Group</b></p>    <p class=western align=center style='text-align:center'><b>group</b></p>
191    </td>    </td>
192    <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;    <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
193    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
# Line 200  Line 200 
200    </td>    </td>
201    <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;    <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
202    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
203    <p class=western align=center style='text-align:center'><b>SEED: FIG &amp;    <p class=western align=center style='text-align:center'><b>SEED: fig &amp;
204    PEG #</b></p>    peg <o:p></o:p></b></p>
205      <p class=western align=center style='text-align:center'><b>number</b></p>
206    </td>    </td>
207    <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;    <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
208    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
209    <p class=western align=center style='text-align:center'><span class=SpellE><b>gi</b></span><b>    <p class=western align=center style='text-align:center'><span class=SpellE><b>gi<sup>b</sup></b></span><b><sup><o:p></o:p></sup></b></p>
210    # <sup>b</sup></b></p>    <p class=western align=center style='text-align:center'><b>number</b></p>
211    </td>    </td>
212    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
213    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
214    <p class=western align=center style='text-align:center'><span class=SpellE><b>Taxon</b></span><b>    <p class=western align=center style='text-align:center'><span class=SpellE><b>Taxon</b></span><b>
215    <span class=SpellE>Group<sup>c</sup></span></b></p>    <span class=SpellE>group<sup>c</sup></span></b></p>
216    </td>    </td>
217   </tr>   </tr>
218   <tr style='mso-yfti-irow:1'>   <tr style='mso-yfti-irow:1'>
# Line 246  Line 247 
247    </td>    </td>
248    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
249    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
250    <p class=western>Lower-gamma <span class=SpellE>Proteobacteria</span> <span    <p class=western>lower-<span class=SpellE>Gammaproteobacteria</span> <span
251    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>    style='mso-bidi-font-weight:bold'>(&#8220;class&#8221;)</span></p>
252    </td>    </td>
253   </tr>   </tr>
254   <tr style='mso-yfti-irow:2'>   <tr style='mso-yfti-irow:2'>
# Line 281  Line 282 
282    </td>    </td>
283    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
284    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
285    <p class=western>Upper-gamma_1 <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-Gamma_1proteobacteria <span style='mso-bidi-font-weight:
286    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>    bold'>(&#8220;subclass&#8221;)</span></p>
287    </td>    </td>
288   </tr>   </tr>
289   <tr style='mso-yfti-irow:3'>   <tr style='mso-yfti-irow:3'>
# Line 316  Line 317 
317    </td>    </td>
318    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
319    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
320    <p class=western>Upper-gamma_2 <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-Gamma_2proteobacteria <span style='mso-bidi-font-weight:
321    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>    bold'>(&#8220;subclass&#8221;)</span></p>
322    </td>    </td>
323   </tr>   </tr>
324   <tr style='mso-yfti-irow:4'>   <tr style='mso-yfti-irow:4'>
# Line 351  Line 352 
352    </td>    </td>
353    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
354    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
355    <p class=western>Upper-gamma_3 <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-Gamma_3proteobacteria <span style='mso-bidi-font-weight:
356    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>    bold'>(&#8220;subclass&#8221;)</span></p>
357    </td>    </td>
358   </tr>   </tr>
359   <tr style='mso-yfti-irow:5'>   <tr style='mso-yfti-irow:5'>
# Line 382  Line 383 
383    </td>    </td>
384    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
385    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
386    <p class=western>Upper-gamma_4 <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-Gamma_4proteobacteria <span style='mso-bidi-font-weight:
387    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>    bold'>(&#8220;subclass&#8221;)</span></p>
388    </td>    </td>
389   </tr>   </tr>
390   <tr style='mso-yfti-irow:6'>   <tr style='mso-yfti-irow:6'>
# Line 413  Line 414 
414    </td>    </td>
415    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
416    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
417    <p class=western>Upper-gamma_5 <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-Gamma_5proteobacteria <span style='mso-bidi-font-weight:
418    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>    bold'>(&#8220;subclass&#8221;)</span></p>
419    </td>    </td>
420   </tr>   </tr>
421   <tr style='mso-yfti-irow:7'>   <tr style='mso-yfti-irow:7'>
# Line 447  Line 448 
448    </td>    </td>
449    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
450    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
451    <p class=western>Beta_1 <span class=SpellE>Proteobacteria</span> <span    <p class=western>Beta_1proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
   style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>  
452    </td>    </td>
453   </tr>   </tr>
454   <tr style='mso-yfti-irow:8'>   <tr style='mso-yfti-irow:8'>
# Line 482  Line 482 
482    </td>    </td>
483    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
484    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
485    <p class=western>Beta_2 <span class=SpellE>Proteobacteria</span> <span    <p class=western>Beta_2proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
   style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>  
486    </td>    </td>
487   </tr>   </tr>
488   <tr style='mso-yfti-irow:9'>   <tr style='mso-yfti-irow:9'>
# Line 517  Line 516 
516    </td>    </td>
517    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
518    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
519    <p class=western>Beta_3 <span class=SpellE>Proteobacteria</span> <span    <p class=western>Beta_3proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
   style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>  
520    </td>    </td>
521   </tr>   </tr>
522   <tr style='mso-yfti-irow:10'>   <tr style='mso-yfti-irow:10'>
# Line 530  Line 528 
528    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
529    <p class=western><i><a    <p class=western><i><a
530    href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Polaromonas"><span    href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Polaromonas"><span
531    class=SpellE>Polaromonas</span></a> </i><span style='mso-bidi-font-style:    class=SpellE>Polaromonas sp.</span></a> </i><span style='mso-bidi-font-style:
532    italic'>sp.</span><o:p></o:p></p>    italic'></span><o:p></o:p></p>
533    </td>    </td>
534    <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;    <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
535    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
# Line 553  Line 551 
551    </td>    </td>
552    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
553    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
554    <p class=western>Beta_4 <span class=SpellE>Proteobacteria</span> <span    <p class=western>Beta_4proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
   style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>  
555    </td>    </td>
556   </tr>   </tr>
557   <tr style='mso-yfti-irow:11'>   <tr style='mso-yfti-irow:11'>
# Line 587  Line 584 
584    </td>    </td>
585    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
586    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
587    <p class=western>Beta_5 <span class=SpellE>Proteobacteria</span> <span    <p class=western>Beta_5proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
   style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>  
588    </td>    </td>
589   </tr>   </tr>
590   <tr style='mso-yfti-irow:12'>   <tr style='mso-yfti-irow:12'>
# Line 622  Line 618 
618    </td>    </td>
619    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
620    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
621    <p class=western>Alpha_1 <span class=SpellE>Proteobacteria</span> <span    <p class=western>Alpha_1proteobacteria <span style='mso-bidi-font-weight:
622    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>    bold'>(&#8220;subclass&#8221;)</span></p>
623    </td>    </td>
624   </tr>   </tr>
625   <tr style='mso-yfti-irow:13'>   <tr style='mso-yfti-irow:13'>
# Line 657  Line 653 
653    </td>    </td>
654    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
655    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
656    <p class=western>Epsilon <span class=SpellE>Proteobacteria</span> (Class) / <span    <p class=western><span class=SpellE>Epsilonproteobacteria</span> (Class) / <span
657    class=SpellE>Flavobacteria</span> (Class)</p>    class=SpellE>Flavobacteria</span> (Class)</p>
658    </td>    </td>
659   </tr>   </tr>
# Line 739  Line 735 
735    </td>    </td>
736    <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;    <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
737    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
738    <p class=western><span style='color:blue'><a    <p class=western><i><span style='color:blue'><a
739    href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Synechosystis"    href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Synechocystis%20"><span
740    target="_blank"><span class=SpellE><i>Synechocystis</i></span><i> </i>sp.</a><i>    class=SpellE>Synechocystis</span></a> </span></i><span style='color:blue'>sp.<i>
741    </i><o:p></o:p></span></p>    </i><o:p></o:p></span></p>
742    </td>    </td>
743    <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;    <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
# Line 1062  Line 1058 
1058    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1059    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
1060    class=SpellE><span style='mso-bidi-font-weight:bold'>Petrotoga</span></span><span    class=SpellE><span style='mso-bidi-font-weight:bold'>Petrotoga</span></span><span
1061    style='mso-bidi-font-weight:bold'> (Genus),<b> </b><span class=SpellE>Dictyoglomi</span><span    style='mso-bidi-font-weight:bold'> (Genus) &amp;<b> </b><span class=SpellE>Dictyoglomi</span><span
1062    style='mso-spacerun:yes'>  </span>(Class) </span><span    style='mso-spacerun:yes'>  </span>(Class) </span><span
1063    style='mso-spacerun:yes'> </span></p>    style='mso-spacerun:yes'> </span></p>
1064    </td>    </td>
# Line 1099  Line 1095 
1095    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1096    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1097    <p class=western><span class=SpellE>Phylogenetic</span> mixture:<span    <p class=western><span class=SpellE>Phylogenetic</span> mixture:<span
1098    style='mso-bidi-font-weight:bold'> <span class=SpellE>Proteobacteria</span>:    style='mso-bidi-font-weight:bold'> upper-<span class=SpellE>Gammaproteobacteria</span>
1099    Upper-gamma (Class), <span class=SpellE>Sphingobacteria</span> (Class), <span    (&#8220;subclass&#8221;) &amp; <span class=SpellE>Sphingobacteria</span>
1100    class=SpellE>Proteobacteria</span>: Alpha (Class)</span></p>    (Class) &amp; <span class=SpellE>Proteobacteria</span>: (Class)</span></p>
1101    </td>    </td>
1102   </tr>   </tr>
1103   <tr style='mso-yfti-irow:27'>   <tr style='mso-yfti-irow:27'>
# Line 1139  Line 1135 
1135    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1136    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
1137    class=SpellE><span style='mso-bidi-font-weight:bold'>Planctomycetaceae</span></span><span    class=SpellE><span style='mso-bidi-font-weight:bold'>Planctomycetaceae</span></span><span
1138    style='mso-bidi-font-weight:bold'> (Family), <span class=SpellE>Myxococcales</span>    style='mso-bidi-font-weight:bold'> (Family) &amp; <span class=SpellE>Myxococcales</span>
1139    (Order), <span class=SpellE>Verrucomicrobia</span> (Phylum)</span></p>    (Order) &amp; <span class=SpellE>Verrucomicrobia</span> (Phylum)</span></p>
1140    </td>    </td>
1141   </tr>   </tr>
1142   <tr style='mso-yfti-irow:28'>   <tr style='mso-yfti-irow:28'>
# Line 1175  Line 1171 
1171    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1172    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1173    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
1174    class=SpellE>Spirochaetes</span> (Phylum), <a    class=SpellE>Spirochaetes</span> (Phylum) &amp; <a
1175    href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&amp;id=131550&amp;lvl=3&amp;p=mapview&amp;p=has_linkout&amp;p=blast_url&amp;p=genome_blast&amp;lin=f&amp;keep=1&amp;srchmode=1&amp;unlock"    href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&amp;id=131550&amp;lvl=3&amp;p=mapview&amp;p=has_linkout&amp;p=blast_url&amp;p=genome_blast&amp;lin=f&amp;keep=1&amp;srchmode=1&amp;unlock"
1176    title=superphylum><span class=SpellE><span style='color:windowtext'>Fibrobacteres</span></span><span    title=superphylum><span class=SpellE><span style='color:windowtext'>Fibrobacteres</span></span><span
1177    style='color:windowtext'> </span></a>(Phylum)</p>    style='color:windowtext'> </span></a>(Phylum)</p>
# Line 1247  Line 1243 
1243    </td>    </td>
1244    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1245    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1246    <p class=western>Alpha_2 <span class=SpellE>Proteobacteria</span> <span    <p class=western>Alpha_2proteobacteria (&#8220;subc<span style='mso-bidi-font-weight:
1247    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>    bold'>lass&#8221;)</span></p>
1248    </td>    </td>
1249   </tr>   </tr>
1250   <tr style='mso-yfti-irow:31'>   <tr style='mso-yfti-irow:31'>
# Line 1307  Line 1303 
1303    </td>    </td>
1304    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1305    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1306    <p class=western>Upper-gamma <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-<span class=SpellE>Gammaproteobacteria</span> <span
1307    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1308    </td>    </td>
1309   </tr>   </tr>
# Line 1378  Line 1374 
1374    </td>    </td>
1375    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1376    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1377    <p class=western>Beta <span class=SpellE>Proteobacteria</span> <span    <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1378    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1379    </td>    </td>
1380   </tr>   </tr>
# Line 1413  Line 1409 
1409    </td>    </td>
1410    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1411    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1412    <p class=western>Beta <span class=SpellE>Proteobacteria</span> <span    <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1413    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1414    </td>    </td>
1415   </tr>   </tr>
# Line 1447  Line 1443 
1443    </td>    </td>
1444    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1445    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1446    <p class=western>Beta <span class=SpellE>Proteobacteria</span> <span    <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1447    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1448    </td>    </td>
1449   </tr>   </tr>
# Line 1545  Line 1541 
1541    </td>    </td>
1542    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1543    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1544    <p class=western>Beta <span class=SpellE>Proteobacteria</span> <span    <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1545    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1546    </td>    </td>
1547   </tr>   </tr>
# Line 1578  Line 1574 
1574    </td>    </td>
1575    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1576    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1577    <p class=western>Upper-gamma <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-<span class=SpellE>Gammaproteobacteria</span> <span
1578    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1579    </td>    </td>
1580   </tr>   </tr>
# Line 1611  Line 1607 
1607    </td>    </td>
1608    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1609    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1610    <p class=western>Upper-gamma <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-<span class=SpellE>Gammaproteobacteria</span> <span
1611    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1612    </td>    </td>
1613   </tr>   </tr>
# Line 1646  Line 1642 
1642    </td>    </td>
1643    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1644    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1645    <p class=western>Upper-gamma <span class=SpellE>Proteobacteria</span> <span    <p class=western>upper-<span class=SpellE>Gammaproteobacteria</span> <span
1646    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1647    </td>    </td>
1648   </tr>   </tr>
# Line 1682  Line 1678 
1678    </td>    </td>
1679    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1680    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1681    <p class=western>Alpha <span class=SpellE>Proteobacteria</span> <span    <p class=western><span class=SpellE>Alphaproteobacteria</span> <span
1682    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1683    </td>    </td>
1684   </tr>   </tr>
# Line 1874  Line 1870 
1870    </td>    </td>
1871    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1872    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1873    <p class=western>Beta <span class=SpellE>Proteobacteria</span> <span    <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1874    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>    style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1875    </td>    </td>
1876   </tr>   </tr>
# Line 1939  Line 1935 
1935    </td>    </td>
1936    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1937    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1938    <p class=western><span class=SpellE>Euryarchaea</span><span style='mso-bidi-font-weight:    <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Halobacteria</span></span><span
1939    bold'>; <span class=SpellE>Halobacteria</span> (Class)</span></p>    style='mso-bidi-font-weight:bold'> (Class)</span></p>
1940    </td>    </td>
1941   </tr>   </tr>
1942   <tr style='mso-yfti-irow:52'>   <tr style='mso-yfti-irow:52'>
# Line 1972  Line 1968 
1968    </td>    </td>
1969    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1970    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1971    <p class=western><span class=SpellE>Euryarchaea</span><span style='mso-bidi-font-weight:    <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Thermoplasmata</span></span><span
1972    bold'>; <span class=SpellE>Thermoplasmata</span> (Class)</span></p>    style='mso-bidi-font-weight:bold'> (Class)</span></p>
1973    </td>    </td>
1974   </tr>   </tr>
1975   <tr style='mso-yfti-irow:53'>   <tr style='mso-yfti-irow:53'>
# Line 2003  Line 1999 
1999    </td>    </td>
2000    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2001    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2002    <p class=western><span class=SpellE>Euryarchaea</span><span style='mso-bidi-font-weight:    <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Methanomicrobia</span></span><span
2003    bold'>; <span class=SpellE>Methanomicrobia</span> (Class)</span></p>    style='mso-bidi-font-weight:bold'> (Class)</span></p>
2004    </td>    </td>
2005   </tr>   </tr>
2006   <tr style='mso-yfti-irow:54'>   <tr style='mso-yfti-irow:54'>
# Line 2038  Line 2034 
2034    </td>    </td>
2035    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2036    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2037    <p class=western><span class=SpellE>Crenarchaeota</span><span    <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Sulfolobales</span></span><span
2038    style='mso-bidi-font-weight:bold'>; <span class=SpellE>Sulfolobales</span> (Order)</span></p>    style='mso-bidi-font-weight:bold'> (Order)</span></p>
2039    </td>    </td>
2040   </tr>   </tr>
2041   <tr style='mso-yfti-irow:55'>   <tr style='mso-yfti-irow:55'>
# Line 2074  Line 2070 
2070    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2071    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2072    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
2073    class=SpellE>Crenarchaeota</span>; <span class=SpellE>Thermoprotei</span>    class=SpellE>Thermoprotei</span> (Class) &amp; <span class=SpellE>Thermococcaceae</span>
   (Class), <span class=SpellE>Euryarchaea</span>; <span class=SpellE>Thermococcaceae</span>  
2074    (Family)</p>    (Family)</p>
2075    </td>    </td>
2076   </tr>   </tr>
# Line 2111  Line 2106 
2106    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2107    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2108    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span    <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
2109    class=SpellE>Euryarchaea</span>; <span class=SpellE><span style='mso-bidi-font-weight:    class=SpellE><span style='mso-bidi-font-weight:bold'>Archaeoglobi</span></span><span
2110    bold'>Archaeoglobi</span></span><span style='mso-bidi-font-weight:bold'> (Class),    style='mso-bidi-font-weight:bold'> (Class) &amp; <span class=SpellE>Nanoarchaeota</span>
2111    <span class=SpellE>Nanoarchaeota</span> (Phylum)</span></p>    (Phylum)</span></p>
2112    </td>    </td>
2113   </tr>   </tr>
2114   <tr style='mso-yfti-irow:57'>   <tr style='mso-yfti-irow:57'>
# Line 2147  Line 2142 
2142    </td>    </td>
2143    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2144    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2145    <p class=western><span class=SpellE>Eukaryota</span>; <span class=SpellE>Viridiplantae</span>    <p class=western><span class=SpellE>Viridiplantae</span> <span
2146    <span style='mso-bidi-font-weight:bold'>(Kingdom)</span></p>    style='mso-bidi-font-weight:bold'>(Kingdom)</span></p>
2147    </td>    </td>
2148   </tr>   </tr>
2149   <tr style='mso-yfti-irow:58;mso-yfti-lastrow:yes'>   <tr style='mso-yfti-irow:58;mso-yfti-lastrow:yes'>
# Line 2182  Line 2177 
2177    </td>    </td>
2178    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;    <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2179    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>    mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2180    <p class=western><span class=SpellE>Eukaryota</span>; Fungi <span    <p class=western>Fungi <span style='mso-bidi-font-weight:bold'>(Kingdom)</span></p>
   style='mso-bidi-font-weight:bold'>(Kingdom)</span></p>  
2181    </td>    </td>
2182   </tr>   </tr>
2183  </table>  </table>
# Line 2192  Line 2186 
2186    
2187  <p class=MsoNormal><span class=SpellE><span class=GramE><sup>a</sup>Organism</span></span>  <p class=MsoNormal><span class=SpellE><span class=GramE><sup>a</sup>Organism</span></span>
2188  acronyms consist of four letters:<span style='mso-spacerun:yes'>  </span>the  acronyms consist of four letters:<span style='mso-spacerun:yes'>  </span>the
2189  first letter of the <i style='mso-bidi-font-style:normal'>Genus</i> name  first letter of the genus name followed by the first three letters of the
2190  followed by the first three letters of the <i style='mso-bidi-font-style:normal'>Species</i>  species name. If underscore/number designations follow the acronym</p>
2191  name. If underscore/number designations follow the acronym proper, these are  
2192  used to distinguish potential ambiguities (as implemented at <span  <p class=MsoNormal><span style='mso-spacerun:yes'> </span><span class=GramE>proper</span>,<span
2193  class=SpellE>AroPath</span> <a  style='mso-spacerun:yes'>  </span>these<span style='mso-spacerun:yes'> 
2194  href="http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html">http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html</a>).  </span>are used<span style='mso-spacerun:yes'>  </span>to distinguish<span
2195  Multiple <span class=SpellE>TyrA</span> species in a single organism are  style='mso-spacerun:yes'>  </span>potential ambiguities<span
2196  distinguished by numbers preceding the acronym.<sup><o:p></o:p></sup></p>  style='mso-spacerun:yes'>  </span>(as implemented at<span
2197    style='mso-spacerun:yes'>  </span><span class=SpellE>AroPath</span><span
2198    style='mso-spacerun:yes'>  </span><a
2199    href="http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html">http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html</a>).<span
2200    style='mso-spacerun:yes'>   </span>Multiple <span class=SpellE>TyrA</span> </p>
2201    
2202    <p class=MsoNormal><span style='mso-spacerun:yes'> </span><span class=GramE>species</span>
2203    in a single organism are distinguished by numbers preceding the acronym.<sup><o:p></o:p></sup></p>
2204    
2205  <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>  <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>
2206    
# Line 2210  Line 2211 
2211  <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>  <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>
2212    
2213  <p class=MsoNormal><span class=SpellE><span class=GramE><sup>c</sup>An</span></span>  <p class=MsoNormal><span class=SpellE><span class=GramE><sup>c</sup>An</span></span>
2214  attempt is made to describe each cohesion group at the hierarchical level at  attempt<span style='mso-spacerun:yes'>  </span>is made to describe each
2215  which all organisms having the sequence occupy the same <span class=SpellE>taxon</span>.  cohesion group at the hierarchical level at<span style='mso-spacerun:yes'> 
2216  <span class=SpellE>NCBI&#8217;s</span> taxonomy page is used as a resource for  </span>which all organisms having the sequence occupy the same <span
2217  this. Typically, cohesion groups gather at about the level of Class, but wide  class=SpellE>taxon</span>. <span class=SpellE><span class=GramE>NCBI&#8217;s</span></span><span
2218  deviations occur in either direction (see text). <i style='mso-bidi-font-style:  class=GramE><span style='mso-spacerun:yes'>  </span>taxonomy</span><span
2219  normal'>Lower-gamma</i> and <i style='mso-bidi-font-style:normal'>upper-gamma</i>  style='mso-spacerun:yes'>  </span>page is used as a </p>
2220  <span class=SpellE><i style='mso-bidi-font-style:normal'>Proteobacteria</i></span>  
2221  (our designation) can be thought of as Sub-class designations of the <span  <p class=MsoNormal><span class=GramE>resource</span> for this.<span
2222  class=SpellE><i style='mso-bidi-font-style:normal'>Proteobacteria</i></span>  style='mso-spacerun:yes'>  </span>Typically<span class=GramE>,<span
2223  Class. The designation &#8220;subsystem&#8221; indicates cohesion groups that  style='mso-spacerun:yes'>  </span>cohesion</span> groups gather at about the
2224  partition within a formal class. <span style='mso-spacerun:yes'> </span>Thus, for  level of Class,<span style='mso-spacerun:yes'>  </span>but wide deviations
2225  example, the Beta <span class=SpellE>Proteobacteria</span> (a formal class)  occur in either direction (see text).<span style='mso-spacerun:yes'>  
2226  partition into five cohesion groups which do not correspond to formal <span  </span>In our treatment, <span class=SpellE>Gammaptoteobacteria</span> can be</p>
2227  class=SpellE>taxon</span> subdivisions.<span style='mso-spacerun:yes'>  </span>For  
2228  detailed information the organism names are hyper-linked to the Taxonomy  <p class=MsoNormal><span style='mso-spacerun:yes'> </span><span class=GramE>thought</span>
2229  Browser at NCBI.</p>  of as the equivalent of a <span class=SpellE>Superclass</span>,<span
2230    style='mso-spacerun:yes'>  </span>with lower-<span class=SpellE>Gammaproteobacteria</span>
2231    and upper-<span class=SpellE>Gammaproteobacteria</span><span
2232    style='mso-spacerun:yes'>  </span>being <span class=SpellE>elevatd</span> to
2233    the <span class=SpellE>taxon</span> level of Class.<span
2234    style='mso-spacerun:yes'>  </span>The designation &#8220;subclass&#8221; </p>
2235    
2236    <p class=MsoNormal><span class=GramE>indicates</span> cohesion groups<span
2237    style='mso-spacerun:yes'>  </span>that partition within a formal class.<span
2238    style='mso-spacerun:yes'>   </span>Thus, for example, the <span class=SpellE>Betaproteobacteria</span>
2239    (a formal class) partition into five cohesion groups which do not correspond to</p>
2240    
2241    <p class=MsoNormal><span style='mso-spacerun:yes'> </span><span class=GramE>formal</span>
2242    <span class=SpellE>taxon</span> subdivisions.<span style='mso-spacerun:yes'> 
2243    </span>For detailed information the organism names are hyper-linked to the
2244    Taxonomy Browser at NCBI.</p>
2245    
2246  <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>  <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>
2247    
# Line 2236  Line 2252 
2252  style='mso-bidi-font-style:normal'>Pelagibacter</i></span><i style='mso-bidi-font-style:  style='mso-bidi-font-style:normal'>Pelagibacter</i></span><i style='mso-bidi-font-style:
2253  normal'> <span class=SpellE>ubique</span></i> in many databases (&#8220;<span  normal'> <span class=SpellE>ubique</span></i> in many databases (&#8220;<span
2254  class=SpellE>Candidatus</span>&#8221; refers to an organism that cannot be  class=SpellE>Candidatus</span>&#8221; refers to an organism that cannot be
2255  maintained in a culture collection)<span style='mso-spacerun:yes'>   maintained in a culture collection) preceding </p>
2256  </span>preceding the genus/species designation.</p>  
2257    <p class=MsoNormal><span class=GramE>the</span> genus/species designation.</p>
2258    
2259  <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><o:p>&nbsp;</o:p></p>  <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><o:p>&nbsp;</o:p></p>
2260    
# Line 2246  Line 2263 
2263  </body>  </body>
2264    
2265  </html>  </html>
   

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