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11 : hwang 1.1 <title>Cohesion Groups</title>
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174 :    
175 :     <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><span
176 :     class=GramE><b style='mso-bidi-font-weight:normal'>Table 1.</b></span><b
177 :     style='mso-bidi-font-weight:normal'> Representative <span class=SpellE>TyrA</span>
178 : hwang 1.2 sequences for 58 cohesion groups</b> </p>
179 : hwang 1.1
180 :     <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><o:p>&nbsp;</o:p></p>
181 :    
182 :     <table class=MsoNormalTable border=1 cellspacing=0 cellpadding=0 width=1103
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186 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
187 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
188 :     <p class=western align=center style='margin-bottom:0in;margin-bottom:.0001pt;
189 :     text-align:center'><b>Cohesion</b></p>
190 : hwang 1.2 <p class=western align=center style='text-align:center'><b>group</b></p>
191 : hwang 1.1 </td>
192 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
193 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
194 :     <p class=western align=center style='text-align:center'><b>Source of <span
195 :     class=SpellE>TyrA</span> sequence</b></p>
196 :     </td>
197 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
198 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
199 :     <p class=western><span class=SpellE><b>Acronym<sup>a</sup></b></span></p>
200 :     </td>
201 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
202 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
203 : hwang 1.2 <p class=western align=center style='text-align:center'><b>SEED: fig &amp;
204 :     peg <o:p></o:p></b></p>
205 :     <p class=western align=center style='text-align:center'><b>number</b></p>
206 : hwang 1.1 </td>
207 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
208 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
209 : hwang 1.2 <p class=western align=center style='text-align:center'><span class=SpellE><b>gi<sup>b</sup></b></span><b><sup><o:p></o:p></sup></b></p>
210 :     <p class=western align=center style='text-align:center'><b>number</b></p>
211 : hwang 1.1 </td>
212 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
213 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
214 :     <p class=western align=center style='text-align:center'><span class=SpellE><b>Taxon</b></span><b>
215 : hwang 1.2 <span class=SpellE>group<sup>c</sup></span></b></p>
216 : hwang 1.1 </td>
217 :     </tr>
218 :     <tr style='mso-yfti-irow:1'>
219 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
220 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
221 :     <p class=western>TyrCG-1</p>
222 :     </td>
223 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
224 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
225 :     <p class=western><span style='color:blue'><a
226 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Erwinia%20carotovora"
227 :     target="_blank"><span class=SpellE><i>Erwinia</i></span><i> <span
228 :     class=SpellE>carotovora</span></i></a><o:p></o:p></span></p>
229 :     </td>
230 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
231 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
232 :     id=Ecar>
233 :     <p class=western><span class=SpellE>Ecar</span></p>
234 :     </td>
235 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
236 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
237 :     <p class=western><a
238 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|218491.3.peg.2590"
239 :     target="_blank">fig|218491.3.peg.2590</a></p>
240 :     </td>
241 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
242 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
243 :     <p class=western><span style='color:blue'><a
244 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=50122273&amp;dopt=GenPept"
245 :     target="_blank">50122273</a></span><span style='color:red;mso-bidi-font-weight:
246 :     bold'>*</span></p>
247 :     </td>
248 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
249 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
250 : hwang 1.2 <p class=western>lower-<span class=SpellE>Gammaproteobacteria</span> <span
251 :     style='mso-bidi-font-weight:bold'>(&#8220;class&#8221;)</span></p>
252 : hwang 1.1 </td>
253 :     </tr>
254 :     <tr style='mso-yfti-irow:2'>
255 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
256 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
257 :     <p class=western>TyrCG-2</p>
258 :     </td>
259 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
260 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
261 :     <p class=western><i><a
262 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pseudomonas%20putida">Pseudomonas
263 :     <span class=SpellE>putida</span></a></i><o:p></o:p></p>
264 :     </td>
265 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
266 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
267 :     id=Pput>
268 :     <p class=western><span class=SpellE>Pput</span></p>
269 :     </td>
270 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
271 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
272 :     <p class=western><a
273 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|160488.1.peg.1756"
274 :     target="_blank">fig|160488.1.peg.1756</a></p>
275 :     </td>
276 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
277 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
278 :     <p class=western><span style='color:blue'><a
279 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=26988501&amp;dopt=GenPept"
280 :     target="_blank">26988501</a></span><span style='color:red;mso-bidi-font-weight:
281 :     bold'>*</span></p>
282 :     </td>
283 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
284 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
285 : hwang 1.2 <p class=western>upper-Gamma_1proteobacteria <span style='mso-bidi-font-weight:
286 :     bold'>(&#8220;subclass&#8221;)</span></p>
287 : hwang 1.1 </td>
288 :     </tr>
289 :     <tr style='mso-yfti-irow:3'>
290 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
291 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
292 :     <p class=western>TyrCG-3</p>
293 :     </td>
294 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
295 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
296 :     <p class=western><i><a
297 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Psychrobacter"><span
298 :     class=SpellE>Psychrobacter</span></a> </i><span style='color:blue'>sp</span>.<o:p></o:p></p>
299 :     </td>
300 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
301 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
302 :     id=PSYC>
303 :     <p class=western>PSYC</p>
304 :     </td>
305 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
306 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
307 :     <p class=western><a
308 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|259536.4.peg.787"
309 :     target="_blank">fig|259536.4.peg.787</a></p>
310 :     </td>
311 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
312 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
313 :     <p class=western><span style='color:blue'><a
314 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=71038727&amp;dopt=GenPept"
315 :     target="_blank">71038727</a></span><span style='color:red;mso-bidi-font-weight:
316 :     bold'>*</span></p>
317 :     </td>
318 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
319 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
320 : hwang 1.2 <p class=western>upper-Gamma_2proteobacteria <span style='mso-bidi-font-weight:
321 :     bold'>(&#8220;subclass&#8221;)</span></p>
322 : hwang 1.1 </td>
323 :     </tr>
324 :     <tr style='mso-yfti-irow:4'>
325 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
326 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
327 :     <p class=western>TyrCG-4</p>
328 :     </td>
329 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
330 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
331 :     <p class=western><i><a
332 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Xantomonas%20campestris"><span
333 :     class=SpellE>Xantomonas</span> <span class=SpellE>campestris</span></a></i><o:p></o:p></p>
334 :     </td>
335 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
336 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
337 :     id=Xcam>
338 :     <p class=western><span class=SpellE>Xcam</span></p>
339 :     </td>
340 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
341 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
342 :     <p class=western><a
343 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|190485.1.peg.1454"
344 :     target="_blank">fig|190485.1.peg.1454</a></p>
345 :     </td>
346 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
347 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
348 :     <p class=western><span style='color:blue'><a
349 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=21230932&amp;dopt=GenPept"
350 :     target="_blank">21230932</a></span><span style='color:red;mso-bidi-font-weight:
351 :     bold'>*</span></p>
352 :     </td>
353 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
354 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
355 : hwang 1.2 <p class=western>upper-Gamma_3proteobacteria <span style='mso-bidi-font-weight:
356 :     bold'>(&#8220;subclass&#8221;)</span></p>
357 : hwang 1.1 </td>
358 :     </tr>
359 :     <tr style='mso-yfti-irow:5'>
360 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
361 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
362 :     <p class=western>TyrCG-5</p>
363 :     </td>
364 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
365 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
366 :     <p class=western><i><a
367 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Alkalilimnicola%20ehrlichei"><span
368 :     class=SpellE>Alkalilimnicola</span> <span class=SpellE>ehrlichei</span></a></i><o:p></o:p></p>
369 :     </td>
370 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
371 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
372 :     id=Aehr>
373 :     <p class=western><span class=SpellE>Aehr</span></p>
374 :     </td>
375 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
376 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
377 :     <p class=western>NA</p>
378 :     </td>
379 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
380 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
381 :     <p class=western><span style='color:blue'><a
382 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114320089">114320089</a><o:p></o:p></span></p>
383 :     </td>
384 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
385 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
386 : hwang 1.2 <p class=western>upper-Gamma_4proteobacteria <span style='mso-bidi-font-weight:
387 :     bold'>(&#8220;subclass&#8221;)</span></p>
388 : hwang 1.1 </td>
389 :     </tr>
390 :     <tr style='mso-yfti-irow:6'>
391 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
392 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
393 :     <p class=western>TyrCG-6</p>
394 :     </td>
395 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
396 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
397 :     <p class=western><i><a
398 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Marinobacter%20aquaeolei"><span
399 :     class=SpellE>Marinobacter</span> <span class=SpellE>aquaeolei</span></a></i><o:p></o:p></p>
400 :     </td>
401 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
402 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
403 :     id=Maqu>
404 :     <p class=western><span class=SpellE>Maqu</span></p>
405 :     </td>
406 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
407 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
408 :     <p class=western>NA</p>
409 :     </td>
410 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
411 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
412 :     <p class=western><span style='color:blue'><a
413 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=77952716&amp;dopt=GenPept">77952716</a><o:p></o:p></span></p>
414 :     </td>
415 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
416 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
417 : hwang 1.2 <p class=western>upper-Gamma_5proteobacteria <span style='mso-bidi-font-weight:
418 :     bold'>(&#8220;subclass&#8221;)</span></p>
419 : hwang 1.1 </td>
420 :     </tr>
421 :     <tr style='mso-yfti-irow:7'>
422 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
423 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
424 :     <p class=western>TyrCG-7</p>
425 :     </td>
426 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
427 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
428 :     <p class=western><i><a
429 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Burkholderia%20xenovorans"><span
430 :     class=SpellE>Burkholderia</span> <span class=SpellE>xenovorans</span></a></i><o:p></o:p></p>
431 :     </td>
432 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
433 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
434 :     id=Bxen>
435 :     <p class=western><span class=SpellE>Bxen</span></p>
436 :     </td>
437 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
438 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
439 :     <p class=western><a
440 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|36873.1.peg.4890"
441 :     target="_blank">fig|36873.1.peg.4890</a></p>
442 :     </td>
443 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
444 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
445 :     <p class=western><span style='color:blue;mso-bidi-font-weight:bold'><a
446 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91784814">91784814</a></span><span
447 :     style='color:red;mso-bidi-font-weight:bold'>*</span></p>
448 :     </td>
449 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
450 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
451 : hwang 1.2 <p class=western>Beta_1proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
452 : hwang 1.1 </td>
453 :     </tr>
454 :     <tr style='mso-yfti-irow:8'>
455 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
456 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
457 :     <p class=western>TyrCG-8</p>
458 :     </td>
459 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
460 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
461 :     <p class=western><i><a
462 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bordetella%20pertussis"><span
463 :     class=SpellE>Bordetella</span> <span class=SpellE>pertussis</span></a></i><o:p></o:p></p>
464 :     </td>
465 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
466 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
467 :     id=Bper>
468 :     <p class=western>Bper_1</p>
469 :     </td>
470 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
471 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
472 :     <p class=western><a
473 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|257313.1.peg.827"
474 :     target="_blank">fig|257313.1.peg.827</a></p>
475 :     </td>
476 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
477 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
478 :     <p class=western><span style='color:blue'><a
479 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=33592104&amp;dopt=GenPept"
480 :     target="_blank">33592104</a></span><span style='color:red;mso-bidi-font-weight:
481 :     bold'>*</span></p>
482 :     </td>
483 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
484 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
485 : hwang 1.2 <p class=western>Beta_2proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
486 : hwang 1.1 </td>
487 :     </tr>
488 :     <tr style='mso-yfti-irow:9'>
489 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
490 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
491 :     <p class=western>TyrCG-9</p>
492 :     </td>
493 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
494 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
495 :     <p class=western><i><a
496 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Neisseria%20gonorrhoeae"><span
497 :     class=SpellE>Neisseria</span> <span class=SpellE>gonorrhoeae</span></a></i><o:p></o:p></p>
498 :     </td>
499 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
500 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
501 :     id=Ngon>
502 :     <p class=western><span class=SpellE>Ngon</span></p>
503 :     </td>
504 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
505 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
506 :     <p class=western><a
507 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|242231.4.peg.1532"
508 :     target="_blank">fig|242231.4.peg.1532</a></p>
509 :     </td>
510 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
511 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
512 :     <p class=western><span style='color:blue'><a
513 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=59801853&amp;dopt=GenPept"
514 :     target="_blank">59801853</a></span><span style='color:red;mso-bidi-font-weight:
515 :     bold'>*</span></p>
516 :     </td>
517 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
518 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
519 : hwang 1.2 <p class=western>Beta_3proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
520 : hwang 1.1 </td>
521 :     </tr>
522 :     <tr style='mso-yfti-irow:10'>
523 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
524 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
525 :     <p class=western>TyrCG-10</p>
526 :     </td>
527 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
528 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
529 :     <p class=western><i><a
530 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Polaromonas"><span
531 : hwang 1.2 class=SpellE>Polaromonas sp.</span></a> </i><span style='mso-bidi-font-style:
532 :     italic'></span><o:p></o:p></p>
533 : hwang 1.1 </td>
534 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
535 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
536 :     id=POLA>
537 :     <p class=western>POLA</p>
538 :     </td>
539 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
540 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
541 :     <p class=western><a
542 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|296591.1.peg.2815"
543 :     target="_blank">fig|296591.1.peg.2815</a></p>
544 :     </td>
545 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
546 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
547 :     <p class=western><span style='color:blue'><a
548 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=91787673&amp;dopt=GenPept"
549 :     target="_blank">91787673</a></span><span style='color:red;mso-bidi-font-weight:
550 :     bold'>*</span></p>
551 :     </td>
552 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
553 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
554 : hwang 1.2 <p class=western>Beta_4proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
555 : hwang 1.1 </td>
556 :     </tr>
557 :     <tr style='mso-yfti-irow:11'>
558 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
559 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
560 :     <p class=western>TyrCG-11</p>
561 :     </td>
562 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
563 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
564 :     <p class=western><i><a
565 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosomonas%20europaea"><span
566 :     class=SpellE>Nitrosomonas</span> <span class=SpellE>europaea</span></a></i></p>
567 :     </td>
568 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
569 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
570 :     <p class=western><span class=SpellE>Neur</span></p>
571 :     </td>
572 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
573 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
574 :     <p class=western><a
575 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|228410.1.peg.323"
576 :     target="_blank">fig|228410.1.peg.323</a></p>
577 :     </td>
578 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
579 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
580 :     <p class=western><span style='color:blue'><a
581 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=30248354&amp;dopt=GenPept"
582 :     target="_blank">30248354</a></span><span style='color:red;mso-bidi-font-weight:
583 :     bold'>*</span></p>
584 :     </td>
585 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
586 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
587 : hwang 1.2 <p class=western>Beta_5proteobacteria <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
588 : hwang 1.1 </td>
589 :     </tr>
590 :     <tr style='mso-yfti-irow:12'>
591 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
592 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
593 :     <p class=western>TyrCG-12</p>
594 :     </td>
595 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
596 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
597 :     <p class=western><i><a
598 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bartonella%20henselae"><span
599 :     class=SpellE>Bartonella</span> <span class=SpellE>henselae</span></a></i><o:p></o:p></p>
600 :     </td>
601 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
602 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
603 :     id=Bhen>
604 :     <p class=western><span class=SpellE>Bhen</span></p>
605 :     </td>
606 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
607 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
608 :     <p class=western><a
609 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|283166.1.peg.1442"
610 :     target="_blank">fig|283166.1.peg.1442</a></p>
611 :     </td>
612 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
613 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
614 :     <p class=western><span style='color:blue'><a
615 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=49476273&amp;dopt=GenPept"
616 :     target="_blank">49476273</a></span><span style='color:red;mso-bidi-font-weight:
617 :     bold'>*</span></p>
618 :     </td>
619 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
620 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
621 : hwang 1.2 <p class=western>Alpha_1proteobacteria <span style='mso-bidi-font-weight:
622 :     bold'>(&#8220;subclass&#8221;)</span></p>
623 : hwang 1.1 </td>
624 :     </tr>
625 :     <tr style='mso-yfti-irow:13'>
626 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
627 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
628 :     <p class=western>TyrCG-13</p>
629 :     </td>
630 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
631 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
632 :     <p class=western><i><a
633 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Wolinella%20succinogenes"><span
634 :     class=SpellE>Wolinella</span> <span class=SpellE>succinogenes</span></a></i><o:p></o:p></p>
635 :     </td>
636 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
637 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
638 :     id=Wsuc>
639 :     <p class=western><span class=SpellE>Wsuc</span></p>
640 :     </td>
641 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
642 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
643 :     <p class=western><a
644 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|273121.1.peg.325"
645 :     target="_blank">fig|273121.1.peg.325</a></p>
646 :     </td>
647 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
648 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
649 :     <p class=western><span style='color:blue'><a
650 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=34482497&amp;dopt=GenPept"
651 :     target="_blank">34482497</a></span><span style='color:red;mso-bidi-font-weight:
652 :     bold'>*</span></p>
653 :     </td>
654 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
655 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
656 : hwang 1.2 <p class=western><span class=SpellE>Epsilonproteobacteria</span> (Class) / <span
657 : hwang 1.1 class=SpellE>Flavobacteria</span> (Class)</p>
658 :     </td>
659 :     </tr>
660 :     <tr style='mso-yfti-irow:14'>
661 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
662 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
663 :     <p class=western>TyrCG-14</p>
664 :     </td>
665 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
666 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
667 :     <p class=western><i><a
668 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Geobacter%20sulfurreducens"><span
669 :     class=SpellE>Geobacter</span> <span class=SpellE>sulfurreducens</span></a></i><o:p></o:p></p>
670 :     </td>
671 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
672 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
673 :     id=Gsul>
674 :     <p class=western><span class=SpellE>Gsul</span></p>
675 :     </td>
676 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
677 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
678 :     <p class=western><a
679 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|243231.1.peg.2590"
680 :     target="_blank">fig|243231.1.peg.2590</a></p>
681 :     </td>
682 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
683 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
684 :     <p class=western><span style='color:blue'><a
685 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=39997701&amp;dopt=GenPept"
686 :     target="_blank">39997701</a></span><span style='color:red;mso-bidi-font-weight:
687 :     bold'>*</span></p>
688 :     </td>
689 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
690 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
691 :     <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold;
692 :     mso-bidi-font-style:italic'>Desulfuromonadales</span></span><span
693 :     style='mso-bidi-font-weight:bold;mso-bidi-font-style:italic'> (Order)</span></p>
694 :     </td>
695 :     </tr>
696 :     <tr style='mso-yfti-irow:15'>
697 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
698 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
699 :     <p class=western>TyrCG-15</p>
700 :     </td>
701 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
702 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
703 :     <p class=western><i><a
704 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfovibrio%20desulfuricans"><span
705 :     class=SpellE>Desulfovibrio</span> <span class=SpellE>desulfuricans</span></a></i><o:p></o:p></p>
706 :     </td>
707 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
708 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
709 :     id=Ddes>
710 :     <p class=western><span class=SpellE>Ddes</span></p>
711 :     </td>
712 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
713 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
714 :     <p class=western><a
715 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|207559.3.peg.3693"
716 :     target="_blank">fig|207559.3.peg.3693</a></p>
717 :     </td>
718 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
719 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
720 :     <p class=western><span style='color:blue;mso-bidi-font-weight:bold'><a
721 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=78358524">78358524</a></span><span
722 :     style='color:red;mso-bidi-font-weight:bold'>*</span></p>
723 :     </td>
724 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
725 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
726 :     <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold;
727 :     mso-bidi-font-style:italic'>Desulfovibrionales</span></span><span
728 :     style='mso-bidi-font-weight:bold;mso-bidi-font-style:italic'> (Order)</span></p>
729 :     </td>
730 :     </tr>
731 :     <tr style='mso-yfti-irow:16'>
732 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
733 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
734 :     <p class=western>TyrCG-16</p>
735 :     </td>
736 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
737 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
738 : hwang 1.2 <p class=western><i><span style='color:blue'><a
739 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Synechocystis%20"><span
740 :     class=SpellE>Synechocystis</span></a> </span></i><span style='color:blue'>sp.<i>
741 : hwang 1.1 </i><o:p></o:p></span></p>
742 :     </td>
743 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
744 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
745 :     id=SYNE>
746 :     <p class=western>SYNE_3</p>
747 :     </td>
748 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
749 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
750 :     <p class=western><a
751 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|1148.1.peg.1391"
752 :     target="_blank">fig|1148.1.peg.1391</a></p>
753 :     </td>
754 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
755 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
756 :     <p class=western><span style='color:blue'><a
757 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=16330562&amp;dopt=GenPept"
758 :     target="_blank">16330562</a></span><span style='color:red;mso-bidi-font-weight:
759 :     bold'>*</span></p>
760 :     </td>
761 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
762 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
763 :     <p class=western><span class=SpellE>Cyanobacteria</span> <span
764 :     style='mso-bidi-font-weight:bold;mso-bidi-font-style:italic'>(Phylum)</span></p>
765 :     </td>
766 :     </tr>
767 :     <tr style='mso-yfti-irow:17'>
768 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
769 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
770 :     <p class=western>TyrCG-17</p>
771 :     </td>
772 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
773 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
774 :     <p class=western><i><a
775 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermobifida%20fusca"><span
776 :     class=SpellE>Thermobifida</span> <span class=SpellE>fusca</span></a></i><o:p></o:p></p>
777 :     </td>
778 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
779 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
780 :     id=Tfus>
781 :     <p class=western><span class=SpellE>Tfus</span></p>
782 :     </td>
783 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
784 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
785 :     <p class=western><a
786 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|269800.4.peg.764"
787 :     target="_blank">fig|269800.4.peg.764</a></p>
788 :     </td>
789 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
790 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
791 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
792 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=72161612">72161612</a>*</span></p>
793 :     </td>
794 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
795 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
796 :     <p class=western><span class=SpellE>Actinobacteridae</span><span
797 :     style='mso-bidi-font-weight:bold;mso-bidi-font-style:italic'> (Subclass)</span></p>
798 :     </td>
799 :     </tr>
800 :     <tr style='mso-yfti-irow:18'>
801 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
802 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
803 :     <p class=western>TyrCG-18</p>
804 :     </td>
805 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
806 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
807 :     <p class=western><span style='color:blue'><a
808 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Lactobacillus%20plantarum"
809 :     target="_blank"><i>Lactobacillus <span class=SpellE>plantarum</span></i></a><o:p></o:p></span></p>
810 :     </td>
811 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
812 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
813 :     id=Lpla>
814 :     <p class=western><span class=SpellE>Lpla</span></p>
815 :     </td>
816 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
817 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
818 :     <p class=western><a
819 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|220668.1.peg.1693"
820 :     target="_blank">fig|220668.1.peg.1693</a></p>
821 :     </td>
822 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
823 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
824 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
825 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=28271503">28271503</a>*</span></p>
826 :     </td>
827 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
828 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
829 :     <p class=western><span style='mso-bidi-font-weight:bold;mso-bidi-font-style:
830 :     italic'>Bacilli (Class)</span></p>
831 :     </td>
832 :     </tr>
833 :     <tr style='mso-yfti-irow:19'>
834 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
835 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
836 :     <p class=western>TyrCG-19</p>
837 :     </td>
838 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
839 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
840 :     <p class=western><i><a
841 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20difficile">Clostridium
842 :     <span class=SpellE>difficile</span></a></i><o:p></o:p></p>
843 :     </td>
844 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
845 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
846 :     id=Cdif>
847 :     <p class=western><span class=SpellE>Cdif</span></p>
848 :     </td>
849 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
850 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
851 :     <p class=western><a
852 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|1496.1.peg.2965"
853 :     target="_blank">fig|1496.1.peg.2965</a></p>
854 :     </td>
855 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
856 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
857 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
858 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=115250885">115250885</a>*</span></p>
859 :     </td>
860 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
861 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
862 :     <p class=western>Clostridia_1 <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
863 :     </td>
864 :     </tr>
865 :     <tr style='mso-yfti-irow:20'>
866 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
867 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
868 :     <p class=western>TyrCG-20</p>
869 :     </td>
870 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
871 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
872 :     <p class=western><i><a
873 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Clostridium%20thermocellum">Clostridium
874 :     <span class=SpellE>thermocellum</span></a></i><o:p></o:p></p>
875 :     </td>
876 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
877 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
878 :     id=Cthe>
879 :     <p class=western>Cthe_5</p>
880 :     </td>
881 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
882 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
883 :     <p class=western><a
884 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|203119.1.peg.2939"
885 :     target="_blank">fig|203119.1.peg.2939</a></p>
886 :     </td>
887 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
888 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
889 :     <p class=western><span style='color:blue'><a
890 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=67874921&amp;dopt=GenPept"
891 :     target="_blank">67874921</a></span><span style='color:red;mso-bidi-font-weight:
892 :     bold'>*</span><span style='color:blue'><o:p></o:p></span></p>
893 :     </td>
894 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
895 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
896 :     <p class=western>Clostridia_2 <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
897 :     </td>
898 :     </tr>
899 :     <tr style='mso-yfti-irow:21'>
900 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
901 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
902 :     <p class=western>TyrCG-21</p>
903 :     </td>
904 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
905 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
906 :     <p class=western><i><a
907 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Moorella%20thermoacetica"><span
908 :     class=SpellE>Moorella</span> <span class=SpellE>thermoacetica</span></a></i><o:p></o:p></p>
909 :     </td>
910 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
911 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
912 :     id=Mthe>
913 :     <p class=western>Mthe_3</p>
914 :     </td>
915 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
916 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
917 :     <p class=western><a
918 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|264732.1.peg.2464"
919 :     target="_blank">fig|264732.1.peg.2464</a></p>
920 :     </td>
921 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
922 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
923 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
924 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=83590180">83590180</a>*</span></p>
925 :     </td>
926 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
927 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
928 :     <p class=western>Clostridia_3 <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)</span></p>
929 :     </td>
930 :     </tr>
931 :     <tr style='mso-yfti-irow:22'>
932 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
933 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
934 :     <p class=western>TyrCG-22</p>
935 :     </td>
936 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
937 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
938 :     <p class=western><i><a
939 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Deinococcus%20radiodurans"><span
940 :     class=SpellE>Deinococcus</span> <span class=SpellE>radiodurans</span></a></i><o:p></o:p></p>
941 :     </td>
942 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
943 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
944 :     id=Drad>
945 :     <p class=western><span class=SpellE>Drad</span></p>
946 :     </td>
947 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
948 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
949 :     <p class=western><a
950 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|243230.1.peg.1305"
951 :     target="_blank">fig|243230.1.peg.1305</a></p>
952 :     </td>
953 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
954 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
955 :     <p class=western><span style='color:blue'><a
956 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=6458858&amp;dopt=GenPept"
957 :     target="_blank">6458858</a></span><span style='color:red;mso-bidi-font-weight:
958 :     bold'>*</span></p>
959 :     </td>
960 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
961 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
962 :     <p class=western><span class=SpellE>Deinococci</span> (Class)</p>
963 :     </td>
964 :     </tr>
965 :     <tr style='mso-yfti-irow:23'>
966 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
967 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
968 :     <p class=western>TyrCG-23</p>
969 :     </td>
970 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
971 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
972 :     <p class=western><i><a
973 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Bacteroides%20thetaiotaomicron"><span
974 :     class=SpellE>Bacteroides</span> <span class=SpellE>thetaiotaomicron</span></a></i><o:p></o:p></p>
975 :     </td>
976 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
977 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
978 :     id=Bthe>
979 :     <p class=western>Bthe_9</p>
980 :     </td>
981 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
982 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
983 :     <p class=western><a
984 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|226186.1.peg.3931"
985 :     target="_blank">fig|226186.1.peg.3931</a></p>
986 :     </td>
987 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
988 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
989 :     <p class=western><span style='color:blue;mso-bidi-font-weight:bold'><a
990 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=29341249">29341249</a></span><span
991 :     style='color:red;mso-bidi-font-weight:bold'>*</span></p>
992 :     </td>
993 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
994 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
995 :     <p class=western><span class=SpellE>Bacteroidetes</span> (Class)</p>
996 :     </td>
997 :     </tr>
998 :     <tr style='mso-yfti-irow:24'>
999 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1000 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1001 :     <p class=western>TyrCG-24</p>
1002 :     </td>
1003 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1004 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1005 :     <p class=western><i><a
1006 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chlorobium%20tepidum"><span
1007 :     class=SpellE>Chlorobium</span> <span class=SpellE>tepidum</span></a></i><o:p></o:p></p>
1008 :     </td>
1009 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1010 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1011 :     id=Ctep>
1012 :     <p class=western><span class=SpellE>Ctep</span></p>
1013 :     </td>
1014 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1015 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1016 :     <p class=western><a
1017 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|194439.1.peg.84"
1018 :     target="_blank">fig|194439.1.peg.84</a></p>
1019 :     </td>
1020 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1021 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1022 :     <p class=western><span style='color:blue'><a
1023 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=21672925&amp;dopt=GenPept"
1024 :     target="_blank">21672925</a></span><span style='color:red;mso-bidi-font-weight:
1025 :     bold'>*</span></p>
1026 :     </td>
1027 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1028 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1029 :     <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Chlorobia</span></span><span
1030 :     style='mso-bidi-font-weight:bold'> (Class)</span></p>
1031 :     </td>
1032 :     </tr>
1033 :     <tr style='mso-yfti-irow:25'>
1034 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1035 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1036 :     <p class=western>TyrCG-25</p>
1037 :     </td>
1038 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1039 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1040 :     <p class=western><i><a
1041 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Petrotoga%20miotherma"><span
1042 :     class=SpellE>Petrotoga</span> <span class=SpellE>miotherma</span></a></i><o:p></o:p></p>
1043 :     </td>
1044 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1045 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1046 :     id=Pmio>
1047 :     <p class=western><span class=SpellE>Pmio</span></p>
1048 :     </td>
1049 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1050 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1051 :     <p class=western>NA</p>
1052 :     </td>
1053 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1054 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1055 :     <p class=western><b>NA</b></p>
1056 :     </td>
1057 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1058 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1059 :     <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
1060 :     class=SpellE><span style='mso-bidi-font-weight:bold'>Petrotoga</span></span><span
1061 : hwang 1.2 style='mso-bidi-font-weight:bold'> (Genus) &amp;<b> </b><span class=SpellE>Dictyoglomi</span><span
1062 : hwang 1.1 style='mso-spacerun:yes'>  </span>(Class) </span><span
1063 :     style='mso-spacerun:yes'> </span></p>
1064 :     </td>
1065 :     </tr>
1066 :     <tr style='mso-yfti-irow:26'>
1067 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1068 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1069 :     <p class=western>TyrCG-26</p>
1070 :     </td>
1071 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1072 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1073 :     <p class=western><i><a
1074 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Coxiella%20burnetii"><span
1075 :     class=SpellE>Coxiella</span> <span class=SpellE>burnetii</span></a></i><o:p></o:p></p>
1076 :     </td>
1077 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1078 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1079 :     id=Cbur>
1080 :     <p class=western><span class=SpellE>Cbur</span></p>
1081 :     </td>
1082 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1083 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1084 :     <p class=western><a
1085 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|227377.1.peg.935"
1086 :     target="_blank">fig|227377.1.peg.935</a></p>
1087 :     </td>
1088 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1089 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1090 :     <p class=western><span style='color:blue'><a
1091 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=29654299&amp;dopt=GenPept"
1092 :     target="_blank">29654299</a></span><span style='color:red;mso-bidi-font-weight:
1093 :     bold'>*</span></p>
1094 :     </td>
1095 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1096 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1097 :     <p class=western><span class=SpellE>Phylogenetic</span> mixture:<span
1098 : hwang 1.2 style='mso-bidi-font-weight:bold'> upper-<span class=SpellE>Gammaproteobacteria</span>
1099 :     (&#8220;subclass&#8221;) &amp; <span class=SpellE>Sphingobacteria</span>
1100 :     (Class) &amp; <span class=SpellE>Proteobacteria</span>: (Class)</span></p>
1101 : hwang 1.1 </td>
1102 :     </tr>
1103 :     <tr style='mso-yfti-irow:27'>
1104 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1105 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1106 :     <p class=western>TyrCG-27</p>
1107 :     </td>
1108 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1109 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1110 :     <p class=western><i><a
1111 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodopirellula%20baltica"><span
1112 :     class=SpellE>Rhodopirellula</span> <span class=SpellE>baltica</span></a></i><span
1113 :     style='mso-bidi-font-style:italic'> (<span class=SpellE><i>Pirellula</i></span>
1114 :     sp.)</span><o:p></o:p></p>
1115 :     </td>
1116 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1117 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1118 :     id=Rbal>
1119 :     <p class=western><span class=SpellE>Rbal</span></p>
1120 :     </td>
1121 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1122 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1123 :     <p class=western><a
1124 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|243090.1.peg.3009"
1125 :     target="_blank">fig|243090.1.peg.3009</a></p>
1126 :     </td>
1127 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1128 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1129 :     <p class=western><span style='color:blue'><a
1130 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=32473675&amp;dopt=GenPept"
1131 :     target="_blank">32473675</a></span><span style='color:red;mso-bidi-font-weight:
1132 :     bold'>*</span></p>
1133 :     </td>
1134 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1135 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1136 :     <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
1137 :     class=SpellE><span style='mso-bidi-font-weight:bold'>Planctomycetaceae</span></span><span
1138 : hwang 1.2 style='mso-bidi-font-weight:bold'> (Family) &amp; <span class=SpellE>Myxococcales</span>
1139 :     (Order) &amp; <span class=SpellE>Verrucomicrobia</span> (Phylum)</span></p>
1140 : hwang 1.1 </td>
1141 :     </tr>
1142 :     <tr style='mso-yfti-irow:28'>
1143 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1144 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1145 :     <p class=western>TyrCG-28</p>
1146 :     </td>
1147 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1148 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1149 :     <p class=western><i><a
1150 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Leptospira%20interrogans"><span
1151 :     class=SpellE>Leptospira</span> <span class=SpellE>interrogans</span></a></i><o:p></o:p></p>
1152 :     </td>
1153 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1154 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1155 :     id=Lint>
1156 :     <p class=western>Lint_1</p>
1157 :     </td>
1158 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1159 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1160 :     <p class=western><a
1161 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|267671.1.peg.2379"
1162 :     target="_blank">fig|267671.1.peg.2379</a></p>
1163 :     </td>
1164 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1165 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1166 :     <p class=western><span style='color:blue'><a
1167 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=45658293&amp;dopt=GenPept"
1168 :     target="_blank">45658293</a></span><span style='color:red;mso-bidi-font-weight:
1169 :     bold'>*</span></p>
1170 :     </td>
1171 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1172 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1173 :     <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
1174 : hwang 1.2 class=SpellE>Spirochaetes</span> (Phylum) &amp; <a
1175 : hwang 1.1 href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&amp;id=131550&amp;lvl=3&amp;p=mapview&amp;p=has_linkout&amp;p=blast_url&amp;p=genome_blast&amp;lin=f&amp;keep=1&amp;srchmode=1&amp;unlock"
1176 :     title=superphylum><span class=SpellE><span style='color:windowtext'>Fibrobacteres</span></span><span
1177 :     style='color:windowtext'> </span></a>(Phylum)</p>
1178 :     </td>
1179 :     </tr>
1180 :     <tr style='mso-yfti-irow:29'>
1181 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1182 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1183 :     <p class=western>TyrCG-29</p>
1184 :     </td>
1185 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1186 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1187 :     <p class=western><i><a
1188 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dehalococcoides%20ethenogenes"><span
1189 :     class=SpellE>Dehalococcoides</span> <span class=SpellE>ethenogenes</span></a>
1190 :     </i><o:p></o:p></p>
1191 :     </td>
1192 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1193 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1194 :     id=Deth>
1195 :     <p class=western><span class=SpellE>Deth</span></p>
1196 :     </td>
1197 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1198 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1199 :     <p class=western><a
1200 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|243164.3.peg.722"
1201 :     target="_blank">fig|243164.3.peg.722</a></p>
1202 :     </td>
1203 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1204 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1205 :     <p class=western><span style='color:blue'><a
1206 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=57234714&amp;dopt=GenPept"
1207 :     target="_blank">57234714</a></span><span style='color:red;mso-bidi-font-weight:
1208 :     bold'>*</span></p>
1209 :     </td>
1210 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1211 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1212 :     <p class=western><span class=SpellE>Chloroflexi</span> <span
1213 :     style='mso-bidi-font-weight:bold'>(Phylum)</span></p>
1214 :     </td>
1215 :     </tr>
1216 :     <tr style='mso-yfti-irow:30'>
1217 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1218 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1219 :     <p class=western>TyrCG-30</p>
1220 :     </td>
1221 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1222 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1223 :     <p class=western><span style='color:blue'><a
1224 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Rhodospirillum%20rubrum"
1225 :     target="_blank"><span class=SpellE><i>Rhodospirillum</i></span><i> <span
1226 :     class=SpellE>rubrum</span></i></a><o:p></o:p></span></p>
1227 :     </td>
1228 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1229 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1230 :     id=Rrub>
1231 :     <p class=western>2Rrub_1</p>
1232 :     </td>
1233 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1234 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1235 :     <p class=western><a
1236 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|1085.1.peg.3401"
1237 :     target="_blank">fig|1085.1.peg.3401</a></p>
1238 :     </td>
1239 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1240 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1241 :     <p class=western><span style='color:blue'><a
1242 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=83592308">83592308</a><o:p></o:p></span></p>
1243 :     </td>
1244 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1245 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1246 : hwang 1.2 <p class=western>Alpha_2proteobacteria (&#8220;subc<span style='mso-bidi-font-weight:
1247 :     bold'>lass&#8221;)</span></p>
1248 : hwang 1.1 </td>
1249 :     </tr>
1250 :     <tr style='mso-yfti-irow:31'>
1251 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1252 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1253 :     <p class=western>TyrCG-31</p>
1254 :     </td>
1255 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1256 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1257 :     <p class=western><i><a
1258 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Gemmata%20obscuriglobus"><span
1259 :     class=SpellE>Gemmata</span> <span class=SpellE>obscuriglobus</span></a></i><o:p></o:p></p>
1260 :     </td>
1261 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1262 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1263 :     id=Gobs>
1264 :     <p class=western>Gobs</p>
1265 :     </td>
1266 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1267 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1268 :     <p class=western>NA</p>
1269 :     </td>
1270 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1271 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1272 :     <p class=western>NA</p>
1273 :     </td>
1274 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1275 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1276 :     <p class=western><span class=SpellE>Planctomyceteceae</span> <span
1277 :     style='mso-bidi-font-weight:bold'>(Family)</span></p>
1278 :     </td>
1279 :     </tr>
1280 :     <tr style='mso-yfti-irow:32'>
1281 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1282 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1283 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1284 :     </td>
1285 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1286 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1287 :     <p class=western><i><a
1288 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Acidithiobacillus%20ferrooxidans"><span
1289 :     class=SpellE>Acidithiobacillus</span> <span class=SpellE>ferrooxidans</span></a></i><o:p></o:p></p>
1290 :     </td>
1291 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1292 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1293 :     id=Afer>
1294 :     <p class=western>Afer_4</p>
1295 :     </td>
1296 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1297 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1298 :     <p class=western>NA<o:p></o:p></p>
1299 :     </td>
1300 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1301 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1302 :     <p class=western style='font-weight:medium'>NA</p>
1303 :     </td>
1304 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1305 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1306 : hwang 1.2 <p class=western>upper-<span class=SpellE>Gammaproteobacteria</span> <span
1307 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1308 :     </td>
1309 :     </tr>
1310 :     <tr style='mso-yfti-irow:33'>
1311 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1312 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1313 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1314 :     </td>
1315 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1316 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1317 :     <p class=western><i><a
1318 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Aquifex%20aeolicus"><span
1319 :     class=SpellE>Aquifex</span> <span class=SpellE>aeolicus</span></a></i><o:p></o:p></p>
1320 :     </td>
1321 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1322 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1323 :     id=Aaeo>
1324 :     <p class=western><span class=SpellE>Aaeo</span></p>
1325 :     </td>
1326 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1327 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1328 :     <p class=western><a
1329 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|224324.1.peg.1217"
1330 :     target="_blank">fig|224324.1.peg.1217</a></p>
1331 :     </td>
1332 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1333 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1334 :     <p class=western><span style='color:blue'><a
1335 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=15606822&amp;dopt=GenPept"
1336 :     target="_blank">15606822</a></span><span style='color:red;mso-bidi-font-weight:
1337 :     bold'>*</span></p>
1338 :     </td>
1339 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1340 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1341 :     <p class=western><span class=SpellE>Aquificae</span> <span style='mso-bidi-font-weight:
1342 :     bold'>(Phylum) </span>orphan</p>
1343 :     </td>
1344 :     </tr>
1345 :     <tr style='mso-yfti-irow:34'>
1346 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1347 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1348 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1349 :     </td>
1350 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1351 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1352 :     <p class=western><i><span style='color:blue'><a
1353 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Azoarcus"><span
1354 :     class=SpellE>Azoarcus</span></a><span class=SpellE>s</span></span></i><span
1355 :     style='color:blue'> sp</span>.<o:p></o:p></p>
1356 :     </td>
1357 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1358 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1359 :     id=AZOA>
1360 :     <p class=western>AZOA</p>
1361 :     </td>
1362 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1363 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1364 :     <p class=western><a
1365 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|76114.4.peg.1423"
1366 :     target="_blank">fig|76114.4.peg.1423</a></p>
1367 :     </td>
1368 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1369 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1370 :     <p class=western><span style='color:blue'><a
1371 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=56475924&amp;dopt=GenPept"
1372 :     target="_blank">56475924</a></span><span style='color:red;mso-bidi-font-weight:
1373 :     bold'>*</span></p>
1374 :     </td>
1375 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1376 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1377 : hwang 1.2 <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1378 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1379 :     </td>
1380 :     </tr>
1381 :     <tr style='mso-yfti-irow:35'>
1382 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1383 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1384 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1385 :     </td>
1386 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1387 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1388 :     <p class=western><i><a
1389 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Chromobacterium%20violaceum"><span
1390 :     class=SpellE>Chromobacterium</span> <span class=SpellE>violaceum</span></a></i><o:p></o:p></p>
1391 :     </td>
1392 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1393 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1394 :     id=Cvio>
1395 :     <p class=western><span class=SpellE>Cvio</span></p>
1396 :     </td>
1397 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1398 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1399 :     <p class=western><a
1400 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|243365.1.peg.3407"
1401 :     target="_blank">fig|243365.1.peg.3407</a></p>
1402 :     </td>
1403 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1404 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1405 :     <p class=western><span style='color:blue'><a
1406 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=34498862&amp;dopt=GenPept"
1407 :     target="_blank">34498862</a></span><span style='color:red;mso-bidi-font-weight:
1408 :     bold'>*</span></p>
1409 :     </td>
1410 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1411 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1412 : hwang 1.2 <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1413 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1414 :     </td>
1415 :     </tr>
1416 :     <tr style='mso-yfti-irow:36'>
1417 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1418 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1419 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1420 :     </td>
1421 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1422 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1423 :     <p class=western><i><a
1424 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Dechloromonas%20aromatica"><span
1425 :     class=SpellE>Dechloromonas</span> <span class=SpellE>aromatica</span></a></i><o:p></o:p></p>
1426 :     </td>
1427 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1428 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1429 :     id=Daro>
1430 :     <p class=western><span class=SpellE>Daro</span></p>
1431 :     </td>
1432 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1433 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1434 :     <p class=western><a
1435 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|159087.4.peg.933"
1436 :     target="_blank">fig|159087.4.peg.933</a></p>
1437 :     </td>
1438 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1439 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1440 :     <p class=western><span style='color:blue'><a
1441 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=71906873&amp;dopt=GenPept"
1442 :     target="_blank">71906873</a></span><span style='color:red'>*</span></p>
1443 :     </td>
1444 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1445 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1446 : hwang 1.2 <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1447 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1448 :     </td>
1449 :     </tr>
1450 :     <tr style='mso-yfti-irow:37'>
1451 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1452 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1453 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1454 :     </td>
1455 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1456 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1457 :     <p class=western><i><a
1458 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Desulfitobacterium%20hafniense"><span
1459 :     class=SpellE>Desulfitobacterium</span> <span class=SpellE>hafniense</span></a></i><o:p></o:p></p>
1460 :     </td>
1461 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1462 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1463 :     id=Dhaf>
1464 :     <p class=western><span class=SpellE>Dhaf</span></p>
1465 :     </td>
1466 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1467 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1468 :     <p class=western><a
1469 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|49338.1.peg.2227"
1470 :     target="_blank">fig|49338.1.peg.2227</a></p>
1471 :     </td>
1472 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1473 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1474 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1475 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=89334457">89334457</a>*</span></p>
1476 :     </td>
1477 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1478 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1479 :     <p class=western>Clostridia<b style='mso-bidi-font-weight:normal'> </b><span
1480 :     style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1481 :     </td>
1482 :     </tr>
1483 :     <tr style='mso-yfti-irow:38'>
1484 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1485 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1486 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1487 :     </td>
1488 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1489 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1490 :     <p class=western><i><span style='color:blue'><a
1491 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Magnetococcus"><span
1492 :     class=SpellE>Magnetococcus</span></a><span class=SpellE>s</span> </span></i><span
1493 :     style='color:blue'>sp.<o:p></o:p></span></p>
1494 :     </td>
1495 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1496 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1497 :     id=MAGN>
1498 :     <p class=western>MAGN_1</p>
1499 :     </td>
1500 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1501 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1502 :     <p class=western><a
1503 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|156889.1.peg.1669"
1504 :     target="_blank">fig|156889.1.peg.1669</a></p>
1505 :     </td>
1506 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1507 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1508 :     <p class=western>NA</p>
1509 :     </td>
1510 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1511 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1512 :     <p class=western>Unclassified <span class=SpellE>Proteobacteria</span> orphan</p>
1513 :     </td>
1514 :     </tr>
1515 :     <tr style='mso-yfti-irow:39'>
1516 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1517 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1518 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1519 :     </td>
1520 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1521 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1522 :     <p class=western><i><a
1523 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylobacillus%20flagellatus"><span
1524 :     class=SpellE>Methylobacillus</span> <span class=SpellE>flagellatus</span></a></i><o:p></o:p></p>
1525 :     </td>
1526 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1527 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1528 :     id=Mfla>
1529 :     <p class=western>Mfla_5</p>
1530 :     </td>
1531 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1532 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1533 :     <p class=western><a
1534 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|265072.1.peg.206"
1535 :     target="_blank">fig|265072.1.peg.206</a></p>
1536 :     </td>
1537 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1538 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1539 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1540 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91775427">91775427</a>*</span></p>
1541 :     </td>
1542 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1543 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1544 : hwang 1.2 <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1545 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1546 :     </td>
1547 :     </tr>
1548 :     <tr style='mso-yfti-irow:40'>
1549 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1550 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1551 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1552 :     </td>
1553 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1554 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1555 :     <p class=western><i><a
1556 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methylococcus%20capsulatus"><span
1557 :     class=SpellE>Methylococcus</span> <span class=SpellE>capsulatus</span></a></i><o:p></o:p></p>
1558 :     </td>
1559 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1560 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1561 :     id=Mcap>
1562 :     <p class=western>Mcap_1</p>
1563 :     </td>
1564 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1565 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1566 :     <p class=western><a
1567 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|243233.4.peg.782"
1568 :     target="_blank">fig|243233.4.peg.782</a></p>
1569 :     </td>
1570 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1571 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1572 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1573 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=53804254">53804254</a>*</span></p>
1574 :     </td>
1575 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1576 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1577 : hwang 1.2 <p class=western>upper-<span class=SpellE>Gammaproteobacteria</span> <span
1578 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1579 :     </td>
1580 :     </tr>
1581 :     <tr style='mso-yfti-irow:41'>
1582 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1583 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1584 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1585 :     </td>
1586 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1587 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1588 :     <p class=western><i><a
1589 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Microbulbifer%20degradans"><span
1590 :     class=SpellE>Microbulbifer</span> <span class=SpellE>degradans</span></a></i><o:p></o:p></p>
1591 :     </td>
1592 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1593 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1594 :     id=Mdeg>
1595 :     <p class=western><span class=SpellE>Mdeg</span></p>
1596 :     </td>
1597 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1598 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1599 :     <p class=western><a
1600 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|203122.1.peg.1111"
1601 :     target="_blank">fig|203122.1.peg.1111</a></p>
1602 :     </td>
1603 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1604 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1605 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1606 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=90021791">90021791</a>*</span></p>
1607 :     </td>
1608 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1609 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1610 : hwang 1.2 <p class=western>upper-<span class=SpellE>Gammaproteobacteria</span> <span
1611 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1612 :     </td>
1613 :     </tr>
1614 :     <tr style='mso-yfti-irow:42'>
1615 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1616 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1617 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1618 :     </td>
1619 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1620 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1621 :     <p class=western><i><a
1622 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Nitrosococcus%20oceani"><span
1623 :     class=SpellE>Nitrosococcus</span> <span class=SpellE>oceani</span></a></i><o:p></o:p></p>
1624 :     </td>
1625 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1626 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1627 :     id=Noce>
1628 :     <p class=western>Noce_1</p>
1629 :     </td>
1630 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1631 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1632 :     <p class=western><a
1633 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|323261.3.peg.7"
1634 :     target="_blank">fig|323261.3.peg.7</a></p>
1635 :     </td>
1636 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1637 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1638 :     <p class=western><span style='color:blue'><a
1639 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=77163714&amp;dopt=GenPept"
1640 :     target="_blank">77163714</a></span><span style='color:red;mso-bidi-font-weight:
1641 :     bold'>*</span></p>
1642 :     </td>
1643 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1644 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1645 : hwang 1.2 <p class=western>upper-<span class=SpellE>Gammaproteobacteria</span> <span
1646 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1647 :     </td>
1648 :     </tr>
1649 :     <tr style='mso-yfti-irow:43'>
1650 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1651 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1652 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1653 :     </td>
1654 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1655 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1656 :     <p class=western><i><a
1657 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pelagibacter%20ubique"><span
1658 :     class=SpellE>Pelagibacter</span> <span class=SpellE>ubique</span></a></i><span
1659 :     class=SpellE><sup>a</sup></span><o:p></o:p></p>
1660 :     </td>
1661 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1662 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1663 :     id=Pubi>
1664 :     <p class=western><span class=SpellE>Pubi</span></p>
1665 :     </td>
1666 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1667 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1668 :     <p class=western><a
1669 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|335992.3.peg.1115"
1670 :     target="_blank">fig|335992.3.peg.1115</a></p>
1671 :     </td>
1672 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1673 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1674 :     <p class=western><span style='color:blue'><a
1675 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=71082920&amp;dopt=GenPept"
1676 :     target="_blank">71082920</a></span><span style='color:red;mso-bidi-font-weight:
1677 :     bold'>*</span></p>
1678 :     </td>
1679 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1680 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1681 : hwang 1.2 <p class=western><span class=SpellE>Alphaproteobacteria</span> <span
1682 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1683 :     </td>
1684 :     </tr>
1685 :     <tr style='mso-yfti-irow:44'>
1686 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1687 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1688 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1689 :     </td>
1690 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1691 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1692 :     <p class=western><i><a
1693 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Symbiobacterium%20thermophilum"><span
1694 :     class=SpellE>Symbiobacterium</span> <span class=SpellE>thermophilum</span></a></i><o:p></o:p></p>
1695 :     </td>
1696 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1697 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1698 :     id=Sthe>
1699 :     <p class=western><span class=SpellE>Sthe</span></p>
1700 :     </td>
1701 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1702 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1703 :     <p class=western><a
1704 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|292459.1.peg.1361"
1705 :     target="_blank">fig|292459.1.peg.1361</a></p>
1706 :     </td>
1707 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1708 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1709 :     <p class=western><a
1710 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=51856245">51856245</a><span
1711 :     style='color:red'>*</span></p>
1712 :     </td>
1713 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1714 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1715 :     <p class=western><span class=SpellE>Actinobacteridia</span> <span
1716 :     style='mso-bidi-font-weight:bold'>(Class) </span>orphan</p>
1717 :     </td>
1718 :     </tr>
1719 :     <tr style='mso-yfti-irow:45'>
1720 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1721 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1722 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1723 :     </td>
1724 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1725 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1726 :     <p class=western><i><a
1727 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophobacter%20fumaroxidans"><span
1728 :     class=SpellE>Syntrophobacter</span> <span class=SpellE>fumaroxidans</span></a></i><o:p></o:p></p>
1729 :     </td>
1730 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1731 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1732 :     id=Sfum>
1733 :     <p class=western>Sfum_1</p>
1734 :     </td>
1735 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1736 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1737 :     <p class=western>NA</p>
1738 :     </td>
1739 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1740 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1741 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1742 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=71548230">71548230</a>*</span></p>
1743 :     </td>
1744 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1745 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1746 :     <p class=western><span class=SpellE>Syntrophobacterales</span><b
1747 :     style='mso-bidi-font-weight:normal'> </b>(Order) orphan</p>
1748 :     </td>
1749 :     </tr>
1750 :     <tr style='mso-yfti-irow:46'>
1751 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1752 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1753 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1754 :     </td>
1755 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1756 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1757 :     <p class=western><i><a
1758 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Syntrophomonas%20wolfei"><span
1759 :     class=SpellE>Syntrophomonas</span> <span class=SpellE>wolfei</span></a></i><o:p></o:p></p>
1760 :     </td>
1761 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1762 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1763 :     id=Swol>
1764 :     <p class=western>Swol_1</p>
1765 :     </td>
1766 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1767 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1768 :     <p class=western>NA</p>
1769 :     </td>
1770 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1771 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1772 :     <p class=western><a
1773 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=114566874">114566874</a><span
1774 :     style='color:red'>*</span></p>
1775 :     </td>
1776 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1777 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1778 :     <p class=western>Clostridia <span style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;)
1779 :     </span>orphan</p>
1780 :     </td>
1781 :     </tr>
1782 :     <tr style='mso-yfti-irow:47'>
1783 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1784 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1785 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1786 :     </td>
1787 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1788 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1789 :     <p class=western><i><a
1790 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermodesulfobacterium%20commune"><span
1791 :     class=SpellE>Thermodesulfobacterium</span> commune</a></i><o:p></o:p></p>
1792 :     </td>
1793 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1794 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1795 :     id=Tcom>
1796 :     <p class=western><span class=SpellE>Tcom</span></p>
1797 :     </td>
1798 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1799 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1800 :     <p class=western>NA</p>
1801 :     </td>
1802 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1803 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1804 :     <p class=western>NA</p>
1805 :     </td>
1806 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1807 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1808 :     <p class=western><span class=SpellE>Thermodesulfobacteria</span> (Phylum)
1809 :     orphan</p>
1810 :     </td>
1811 :     </tr>
1812 :     <tr style='mso-yfti-irow:48'>
1813 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1814 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1815 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1816 :     </td>
1817 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1818 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1819 :     <p class=western><i><a
1820 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thermotoga%20maritima"><span
1821 :     class=SpellE>Thermotoga</span> <span class=SpellE>maritima</span></a></i><o:p></o:p></p>
1822 :     </td>
1823 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1824 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1825 :     id=Tmar>
1826 :     <p class=western><span class=SpellE>Tmar</span></p>
1827 :     </td>
1828 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1829 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1830 :     <p class=western><a
1831 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|243274.1.peg.339"
1832 :     target="_blank">fig|243274.1.peg.339</a></p>
1833 :     </td>
1834 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1835 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1836 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1837 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=15643112">15643112</a>*</span></p>
1838 :     </td>
1839 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1840 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1841 :     <p class=western><span class=SpellE>Thermotogae</span> (Genus) orphan</p>
1842 :     </td>
1843 :     </tr>
1844 :     <tr style='mso-yfti-irow:49'>
1845 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1846 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1847 :     <p class=western><span class=SpellE>TyrCG</span>-O</p>
1848 :     </td>
1849 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1850 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1851 :     <p class=western><i><a
1852 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Thiobacillus%20denitrificans"><span
1853 :     class=SpellE>Thiobacillus</span> <span class=SpellE>denitrificans</span></a></i><o:p></o:p></p>
1854 :     </td>
1855 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1856 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1857 :     id=Tden>
1858 :     <p class=western><span class=SpellE>Tden</span></p>
1859 :     </td>
1860 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1861 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1862 :     <p class=western><a
1863 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|292415.3.peg.543"
1864 :     target="_blank">fig|292415.3.peg.543</a></p>
1865 :     </td>
1866 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1867 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1868 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1869 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=74316971">74316971</a>*</span></p>
1870 :     </td>
1871 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1872 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1873 : hwang 1.2 <p class=western><span class=SpellE>Betaproteobacteria</span> <span
1874 : hwang 1.1 style='mso-bidi-font-weight:bold'>(&#8220;subclass&#8221;) </span>orphan</p>
1875 :     </td>
1876 :     </tr>
1877 :     <tr style='mso-yfti-irow:50'>
1878 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1879 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1880 :     <p class=western>TyrCG-80</p>
1881 :     </td>
1882 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1883 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1884 :     <p class=western><i><a
1885 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanococcoides%20burtonii"><span
1886 :     class=SpellE>Methanococcoides</span> <span class=SpellE>burtonii</span></a></i><o:p></o:p></p>
1887 :     </td>
1888 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1889 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1890 :     id=Mbur>
1891 :     <p class=western><span class=SpellE>Mbur</span></p>
1892 :     </td>
1893 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1894 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1895 :     <p class=western><a
1896 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|259564.1.peg.2246"
1897 :     target="_blank">fig|259564.1.peg.2246</a></p>
1898 :     </td>
1899 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1900 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1901 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1902 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=91773934">91773934</a>*</span></p>
1903 :     </td>
1904 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1905 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1906 :     <p class=western><span class=SpellE>Euryarchaea</span> (Phylum)</p>
1907 :     </td>
1908 :     </tr>
1909 :     <tr style='mso-yfti-irow:51'>
1910 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1911 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1912 :     <p class=western>TyrCG-81</p>
1913 :     </td>
1914 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1915 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1916 :     <p class=western><i><a
1917 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Haloarcula%20marismortui"><span
1918 :     class=SpellE>Haloarcula</span> <span class=SpellE>marismortui</span></a></i><o:p></o:p></p>
1919 :     </td>
1920 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1921 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1922 :     id=Hmar>
1923 :     <p class=western>Hmar_2</p>
1924 :     </td>
1925 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1926 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1927 :     <p class=western><a
1928 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|272569.1.peg.498"
1929 :     target="_blank">fig|272569.1.peg.498</a></p>
1930 :     </td>
1931 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1932 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1933 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1934 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=55377389">55377389</a>*</span></p>
1935 :     </td>
1936 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1937 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1938 : hwang 1.2 <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Halobacteria</span></span><span
1939 :     style='mso-bidi-font-weight:bold'> (Class)</span></p>
1940 : hwang 1.1 </td>
1941 :     </tr>
1942 :     <tr style='mso-yfti-irow:52'>
1943 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1944 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1945 :     <p class=western>TyrCG-82</p>
1946 :     </td>
1947 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1948 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1949 :     <p class=western><i><a
1950 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Ferroplasma%20acidarmanusi"><span
1951 :     class=SpellE>Ferroplasma</span> <span class=SpellE>acidarmanus</span></a></i><o:p></o:p></p>
1952 :     </td>
1953 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1954 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1955 :     id=Faci>
1956 :     <p class=western>Faci_1</p>
1957 :     </td>
1958 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1959 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1960 :     <p class=western><a
1961 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|97393.1.peg.324"
1962 :     target="_blank">fig|97393.1.peg.324</a></p>
1963 :     </td>
1964 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1965 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1966 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1967 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=68141176">68141176</a>*</span></p>
1968 :     </td>
1969 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
1970 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1971 : hwang 1.2 <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Thermoplasmata</span></span><span
1972 :     style='mso-bidi-font-weight:bold'> (Class)</span></p>
1973 : hwang 1.1 </td>
1974 :     </tr>
1975 :     <tr style='mso-yfti-irow:53'>
1976 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
1977 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1978 :     <p class=western>TyrCG-83</p>
1979 :     </td>
1980 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
1981 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1982 :     <p class=western><i><a
1983 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Methanospirillum%20hungateii"><span
1984 :     class=SpellE>Methanospirillum</span> <span class=SpellE>hungatei</span></a></i><o:p></o:p></p>
1985 :     </td>
1986 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
1987 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
1988 :     id=Mhun>
1989 :     <p class=western><span class=SpellE>Mhun</span></p>
1990 :     </td>
1991 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
1992 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1993 :     <p class=western>NA</p>
1994 :     </td>
1995 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
1996 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
1997 :     <p class=western><span style='color:red;mso-bidi-font-weight:bold'><a
1998 :     href="http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&amp;val=8602324">8602324</a>*</span></p>
1999 :     </td>
2000 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2001 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2002 : hwang 1.2 <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Methanomicrobia</span></span><span
2003 :     style='mso-bidi-font-weight:bold'> (Class)</span></p>
2004 : hwang 1.1 </td>
2005 :     </tr>
2006 :     <tr style='mso-yfti-irow:54'>
2007 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
2008 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2009 :     <p class=western>TyrCG-84</p>
2010 :     </td>
2011 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
2012 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2013 :     <p class=western><i><a
2014 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Sulfolobus%20solfataricus"><span
2015 :     class=SpellE>Sulfolobus</span> <span class=SpellE>solfataricus</span></a></i><o:p></o:p></p>
2016 :     </td>
2017 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
2018 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
2019 :     id=Ssol>
2020 :     <p class=western><span class=SpellE>Ssol</span></p>
2021 :     </td>
2022 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
2023 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2024 :     <p class=western><a
2025 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|273057.1.peg.273"
2026 :     target="_blank">fig|273057.1.peg.273</a></p>
2027 :     </td>
2028 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
2029 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2030 :     <p class=western><span style='color:blue'><a
2031 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=15897245&amp;dopt=GenPept"
2032 :     target="_blank">15897245</a></span><span style='color:red;mso-bidi-font-weight:
2033 :     bold'>*</span></p>
2034 :     </td>
2035 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2036 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2037 : hwang 1.2 <p class=western><span class=SpellE><span style='mso-bidi-font-weight:bold'>Sulfolobales</span></span><span
2038 :     style='mso-bidi-font-weight:bold'> (Order)</span></p>
2039 : hwang 1.1 </td>
2040 :     </tr>
2041 :     <tr style='mso-yfti-irow:55'>
2042 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
2043 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2044 :     <p class=western>TyrCG-85</p>
2045 :     </td>
2046 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
2047 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2048 :     <p class=western><i><a
2049 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Pyrobaculum%20aerophilum"><span
2050 :     class=SpellE>Pyrobaculum</span> <span class=SpellE>aerophilum</span></a></i><o:p></o:p></p>
2051 :     </td>
2052 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
2053 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
2054 :     id=Paer>
2055 :     <p class=western>Paer_2</p>
2056 :     </td>
2057 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
2058 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2059 :     <p class=western><a
2060 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|178306.1.peg.1339"
2061 :     target="_blank">fig|178306.1.peg.1339</a></p>
2062 :     </td>
2063 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
2064 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2065 :     <p class=western><span style='color:blue'><a
2066 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=18312982&amp;dopt=GenPept"
2067 :     target="_blank">18312982</a></span><span style='color:red;mso-bidi-font-weight:
2068 :     bold'>*</span></p>
2069 :     </td>
2070 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2071 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2072 :     <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
2073 : hwang 1.2 class=SpellE>Thermoprotei</span> (Class) &amp; <span class=SpellE>Thermococcaceae</span>
2074 : hwang 1.1 (Family)</p>
2075 :     </td>
2076 :     </tr>
2077 :     <tr style='mso-yfti-irow:56'>
2078 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
2079 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2080 :     <p class=western>TyrCG-86</p>
2081 :     </td>
2082 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
2083 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2084 :     <p class=western><i><a
2085 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Archaeoglobus%20fulgidus"><span
2086 :     class=SpellE>Archaeoglobus</span> <span class=SpellE>fulgidus</span></a></i><o:p></o:p></p>
2087 :     </td>
2088 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
2089 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
2090 :     id=Aful>
2091 :     <p class=western>Aful_1</p>
2092 :     </td>
2093 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
2094 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2095 :     <p class=western><a
2096 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|224325.1.peg.224"
2097 :     target="_blank">fig|224325.1.peg.224</a></p>
2098 :     </td>
2099 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
2100 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2101 :     <p class=western><span style='color:blue'><a
2102 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=11497843&amp;dopt=GenPept"
2103 :     target="_blank">11497843</a></span><span style='color:red;mso-bidi-font-weight:
2104 :     bold'>*</span></p>
2105 :     </td>
2106 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2107 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2108 :     <p class=western><span class=SpellE>Phylogenetic</span> mixture: <span
2109 : hwang 1.2 class=SpellE><span style='mso-bidi-font-weight:bold'>Archaeoglobi</span></span><span
2110 :     style='mso-bidi-font-weight:bold'> (Class) &amp; <span class=SpellE>Nanoarchaeota</span>
2111 :     (Phylum)</span></p>
2112 : hwang 1.1 </td>
2113 :     </tr>
2114 :     <tr style='mso-yfti-irow:57'>
2115 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
2116 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2117 :     <p class=western>TyrCG-95</p>
2118 :     </td>
2119 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
2120 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2121 :     <p class=western><i><a
2122 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Arabidopsis%20thaliana">Arabidopsis
2123 :     thaliana</a></i><o:p></o:p></p>
2124 :     </td>
2125 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
2126 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
2127 :     id=Atha>
2128 :     <p class=western>1Atha</p>
2129 :     </td>
2130 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
2131 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2132 :     <p class=western><a
2133 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|3702.1.peg.1877"
2134 :     target="_blank">fig|3702.1.peg.1877</a></p>
2135 :     </td>
2136 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
2137 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2138 :     <p class=western><span style='color:blue'><a
2139 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=15218283&amp;dopt=GenPept"
2140 :     target="_blank">15218283</a></span><span style='color:red;mso-bidi-font-weight:
2141 :     bold'>*</span></p>
2142 :     </td>
2143 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2144 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2145 : hwang 1.2 <p class=western><span class=SpellE>Viridiplantae</span> <span
2146 :     style='mso-bidi-font-weight:bold'>(Kingdom)</span></p>
2147 : hwang 1.1 </td>
2148 :     </tr>
2149 :     <tr style='mso-yfti-irow:58;mso-yfti-lastrow:yes'>
2150 :     <td width=83 valign=top style='width:62.3pt;border:inset black 1.0pt;
2151 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2152 :     <p class=western>TyrCG-98</p>
2153 :     </td>
2154 :     <td width=255 valign=top style='width:191.4pt;border:inset black 1.0pt;
2155 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2156 :     <p class=western><i><a
2157 :     href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Saccharomyces%20cerevisiae"><span
2158 :     class=SpellE>Saccharomyces</span> <span class=SpellE>cerevisiae</span></a></i><o:p></o:p></p>
2159 :     </td>
2160 :     <td width=84 valign=top style='width:63.1pt;border:inset black 1.0pt;
2161 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'
2162 :     id=Scer>
2163 :     <p class=western><span class=SpellE>Scer</span></p>
2164 :     </td>
2165 :     <td width=177 valign=top style='width:132.8pt;border:inset black 1.0pt;
2166 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2167 :     <p class=western><a
2168 :     href="http://theseed.uchicago.edu/FIG/protein.cgi?prot=fig|4932.3.peg.431"
2169 :     target="_blank">fig|4932.3.peg.431</a></p>
2170 :     </td>
2171 :     <td width=108 valign=top style='width:81.0pt;border:inset black 1.0pt;
2172 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2173 :     <p class=western><span style='color:blue'><a
2174 :     href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=Protein&amp;list_uids=6319643&amp;dopt=GenPept"
2175 :     target="_blank">6319643</a></span><span style='color:red;mso-bidi-font-weight:
2176 :     bold'>*</span></p>
2177 :     </td>
2178 :     <td width=396 valign=top style='width:297.0pt;border:inset black 1.0pt;
2179 :     mso-border-alt:inset black .75pt;padding:5.25pt 5.25pt 5.25pt 5.25pt'>
2180 : hwang 1.2 <p class=western>Fungi <span style='mso-bidi-font-weight:bold'>(Kingdom)</span></p>
2181 : hwang 1.1 </td>
2182 :     </tr>
2183 :     </table>
2184 :    
2185 :     <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>
2186 :    
2187 :     <p class=MsoNormal><span class=SpellE><span class=GramE><sup>a</sup>Organism</span></span>
2188 :     acronyms consist of four letters:<span style='mso-spacerun:yes'>  </span>the
2189 : hwang 1.2 first letter of the genus name followed by the first three letters of the
2190 :     species name. If underscore/number designations follow the acronym</p>
2191 :    
2192 :     <p class=MsoNormal><span style='mso-spacerun:yes'> </span><span class=GramE>proper</span>,<span
2193 :     style='mso-spacerun:yes'>  </span>these<span style='mso-spacerun:yes'> 
2194 :     </span>are used<span style='mso-spacerun:yes'>  </span>to distinguish<span
2195 :     style='mso-spacerun:yes'>  </span>potential ambiguities<span
2196 :     style='mso-spacerun:yes'>  </span>(as implemented at<span
2197 :     style='mso-spacerun:yes'>  </span><span class=SpellE>AroPath</span><span
2198 :     style='mso-spacerun:yes'>  </span><a
2199 :     href="http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html">http://www.aropath.lanl.gov/Organisms/Acronyms_sorted_by_species.html</a>).<span
2200 :     style='mso-spacerun:yes'>   </span>Multiple <span class=SpellE>TyrA</span> </p>
2201 :    
2202 :     <p class=MsoNormal><span style='mso-spacerun:yes'> </span><span class=GramE>species</span>
2203 :     in a single organism are distinguished by numbers preceding the acronym.<sup><o:p></o:p></sup></p>
2204 : hwang 1.1
2205 :     <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>
2206 :    
2207 :     <p class=MsoNormal><span class=SpellE><span class=GramE><sup>b</sup>Gene</span></span>
2208 :     identification number. A red asterisk indicates that sequencing of the genome
2209 :     is essentially complete.</p>
2210 :    
2211 :     <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>
2212 :    
2213 :     <p class=MsoNormal><span class=SpellE><span class=GramE><sup>c</sup>An</span></span>
2214 : hwang 1.2 attempt<span style='mso-spacerun:yes'>  </span>is made to describe each
2215 :     cohesion group at the hierarchical level at<span style='mso-spacerun:yes'> 
2216 :     </span>which all organisms having the sequence occupy the same <span
2217 :     class=SpellE>taxon</span>. <span class=SpellE><span class=GramE>NCBI&#8217;s</span></span><span
2218 :     class=GramE><span style='mso-spacerun:yes'>  </span>taxonomy</span><span
2219 :     style='mso-spacerun:yes'>  </span>page is used as a </p>
2220 :    
2221 :     <p class=MsoNormal><span class=GramE>resource</span> for this.<span
2222 :     style='mso-spacerun:yes'>  </span>Typically<span class=GramE>,<span
2223 :     style='mso-spacerun:yes'>  </span>cohesion</span> groups gather at about the
2224 :     level of Class,<span style='mso-spacerun:yes'>  </span>but wide deviations
2225 :     occur in either direction (see text).<span style='mso-spacerun:yes'>  
2226 :     </span>In our treatment, <span class=SpellE>Gammaptoteobacteria</span> can be</p>
2227 :    
2228 :     <p class=MsoNormal><span style='mso-spacerun:yes'> </span><span class=GramE>thought</span>
2229 :     of as the equivalent of a <span class=SpellE>Superclass</span>,<span
2230 :     style='mso-spacerun:yes'>  </span>with lower-<span class=SpellE>Gammaproteobacteria</span>
2231 :     and upper-<span class=SpellE>Gammaproteobacteria</span><span
2232 :     style='mso-spacerun:yes'>  </span>being <span class=SpellE>elevatd</span> to
2233 :     the <span class=SpellE>taxon</span> level of Class.<span
2234 :     style='mso-spacerun:yes'>  </span>The designation &#8220;subclass&#8221; </p>
2235 :    
2236 :     <p class=MsoNormal><span class=GramE>indicates</span> cohesion groups<span
2237 :     style='mso-spacerun:yes'>  </span>that partition within a formal class.<span
2238 :     style='mso-spacerun:yes'>   </span>Thus, for example, the <span class=SpellE>Betaproteobacteria</span>
2239 :     (a formal class) partition into five cohesion groups which do not correspond to</p>
2240 :    
2241 :     <p class=MsoNormal><span style='mso-spacerun:yes'> </span><span class=GramE>formal</span>
2242 :     <span class=SpellE>taxon</span> subdivisions.<span style='mso-spacerun:yes'> 
2243 :     </span>For detailed information the organism names are hyper-linked to the
2244 :     Taxonomy Browser at NCBI.</p>
2245 : hwang 1.1
2246 :     <p class=MsoNormal><sup><o:p>&nbsp;</o:p></sup></p>
2247 :    
2248 :     <p class=MsoNormal><span class=SpellE><span class=GramE><sup>d</sup><i
2249 :     style='mso-bidi-font-style:normal'>Pelagibacter</i></span></span><i
2250 :     style='mso-bidi-font-style:normal'> <span class=SpellE>ubique</span></i> is
2251 :     labeled as <span class=SpellE>Candidatus</span> <span class=SpellE><i
2252 :     style='mso-bidi-font-style:normal'>Pelagibacter</i></span><i style='mso-bidi-font-style:
2253 :     normal'> <span class=SpellE>ubique</span></i> in many databases (&#8220;<span
2254 :     class=SpellE>Candidatus</span>&#8221; refers to an organism that cannot be
2255 : hwang 1.2 maintained in a culture collection) preceding </p>
2256 :    
2257 :     <p class=MsoNormal><span class=GramE>the</span> genus/species designation.</p>
2258 : hwang 1.1
2259 :     <p class=western style='margin-bottom:0in;margin-bottom:.0001pt'><o:p>&nbsp;</o:p></p>
2260 :    
2261 :     </div>
2262 :    
2263 :     </body>
2264 :    
2265 :     </html>

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