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1 : overbeek 1.1 <h1 style="text-align: center">Protein Families Examples</h1>
2 :     <h2 style="text-align: center">Updated January 27, 2006. Rob Edwards</h2>
3 :    
4 :     <center><h2>Protein Families</h2></center>
5 :    
6 :     <p><a href="ProteinFamilies.html">General</a> help and description about the protein families is also available. This is a series of working examples, to be extended.</p>
7 :    
8 :    
9 :     <p>These are some example protein families, mainly chosen because they are small and convenient to look at. They may change over time as the families are updated.</p>
10 :    
11 :     <h3>Example 1</h3>
12 :    
13 :     <p>This little example shows one protein that is misannotated in PIR and several that are wrong in PFAMs</p>
14 :     <ul>
15 :     <li>Start at <a href="../protein.cgi?prot=fig|83333.1.peg.1994" target="_blank">fig|83333.1.peg.1994</a>
16 :     <li>Click on the <a href="../proteinfamilies.cgi?user=&prot=fig|83333.1.peg.1994&equivalence=1" target="_blank">explore protein families link</a></li>
17 :     <li>Choose PIR from the second pull down family menu</li>
18 :     <li>Click "Compare these families"</li>
19 :     <li>You will only see one protein, and it is clearly mis-annotated in PIR</li>
20 :     <li>This table is only showing those proteins that are in family 1 and not in family two AND could be a candidate for family 2</li>
21 :     <ul>
22 :     <li>Now, click the checkbox next to "Show all proteins in the two families"</li>
23 :     <li>Click "Compare these families"</li>
24 :     <li>This shows all the proteins that are in family 1 and not in family 2, regardless of whether there are candidates in other PIR families</li>
25 :     </ul>
26 :     <li>You should also look at the comparisons using family 2 not family 1, OR, and AND to see what is present in each family</li>
27 :     </ul>
28 :    
29 :    
30 :    
31 :     <h3>Example 2</h3>
32 :    
33 :     <p>This is a little example from Histidine Biosynthesis</p>
34 :     <ul>
35 :     <li>Start at <a href="../protein.cgi?prot=fig|103690.1.peg.4768" target="_blank">fig|103690.1.peg.4768</a></li>
36 :     <li>Click on the <a href="../proteinfamilies.cgi?prot=fig|103690.1.peg.4768&equivalence=1" target="_blank">explore protein families link</a></li>
37 :     <li>On the two pull down menu's choose PIR from the second menu</li>
38 :     <li>Click "Compare these families"</li>
39 :     <ul>
40 :     <li>There are no proteins that are in the FIGfam that are not in the PIR fam but are in another family</li>
41 :     <li>If you check the show all box and try again, it will show you all the proteins that are in the FIGfam, and the other families they are in</li>
42 :     </ul>
43 :     <li>Now click "In family two and NOT family one" and click submit again</li>
44 :     <li>This shows the proteins that are in the PIR family but not in the FIG family</li>
45 :     <li>The cells colored red do not have the same function as the column header. Mouse over to find roles of proteins</li>
46 :     </ul>
47 :    
48 :    
49 :    
50 :    
51 :     <h3>Example </h3>
52 :    
53 :     <p>Polymyxin resistance protein PmrJ, predicted deacetylase</p>
54 :     <p>A nice small family that you can compare to PFAM. There are two different views. The family centric view shows the whole family. The table that shows the other families that are also represented shows <em>all</em> families that are also related to the proteins in the table.</p>
55 :    
56 :     <p>On the other hand, the protein centric view comes in from a single protein (e.g. if you have clicked a link from the protein page, and only shows you those other families that are related to this particular protein</p>.
57 :    
58 :     <ol>
59 :     <li><a href="../proteinfamilies.cgi?family=fig|PF003364">family centric</a></li>
60 :     <li><a href="../proteinfamilies.cgi?user=$user&prot=fig|119912.1.peg.2301&equivalence=1">gene centric</a></li>
61 :     </ol>
62 :    
63 :    
64 : overbeek 1.2 <h1>Other examples, not yet explored</h1>
65 :    
66 :     <p>These examples are ones that are worth looking at and exploring. The comparisons were done with Family 1 NOT Family 2. The for and against are just as shown in the final tables, so you generally want a result with some "againsts" to look at. Also, the "Red" column is the number of cells that would be colored red (i.e. wrong).</p>
67 :    
68 :     <h2>Histidine Biosynthesis compared to PIR</h2>
69 :     <table border=1>
70 :     <tr><th>peg<th>Family 1</th><th>Family 2</th><th>For</th><th>Against</th><th>Red</th></tr>
71 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1994" target="_blank">fig|83333.1.peg.1994</a> &nbsp; </td><td> &nbsp; fig|PF000056 &nbsp; </td><td> &nbsp; pir|PIRSF000486 &nbsp; </td><td> &nbsp; 18 &nbsp; </td><td> &nbsp; -7 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
72 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|292459.1.peg.2713" target="_blank">fig|292459.1.peg.2713</a> &nbsp; </td><td> &nbsp; fig|PF000056 &nbsp; </td><td> &nbsp; pir|PIRSF006650 &nbsp; </td><td> &nbsp; 66 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
73 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.573" target="_blank">fig|272626.1.peg.573</a> &nbsp; </td><td> &nbsp; fig|PF003447 &nbsp; </td><td> &nbsp; pir|PIRSF006650 &nbsp; </td><td> &nbsp; 10 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
74 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.574" target="_blank">fig|272626.1.peg.574</a> &nbsp; </td><td> &nbsp; fig|PF000991 &nbsp; </td><td> &nbsp; pir|PIRSF001549 &nbsp; </td><td> &nbsp; 19 &nbsp; </td><td> &nbsp; -7 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
75 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|243274.1.peg.1033" target="_blank">fig|243274.1.peg.1033</a> &nbsp; </td><td> &nbsp; fig|PF000991 &nbsp; </td><td> &nbsp; pir|PIRSF027379 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; -17 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
76 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.2001" target="_blank">fig|83333.1.peg.2001</a> &nbsp; </td><td> &nbsp; fig|PF001505 &nbsp; </td><td> &nbsp; pir|PIRSF001258 &nbsp; </td><td> &nbsp; 108 &nbsp; </td><td> &nbsp; -147 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
77 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.2001" target="_blank">fig|83333.1.peg.2001</a> &nbsp; </td><td> &nbsp; fig|PF002226 &nbsp; </td><td> &nbsp; pir|PIRSF001258 &nbsp; </td><td> &nbsp; 111 &nbsp; </td><td> &nbsp; -155 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
78 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.566" target="_blank">fig|272626.1.peg.566</a> &nbsp; </td><td> &nbsp; fig|PF001505 &nbsp; </td><td> &nbsp; pir|PIRSF006833 &nbsp; </td><td> &nbsp; 120 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
79 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.567" target="_blank">fig|272626.1.peg.567</a> &nbsp; </td><td> &nbsp; fig|PF002226 &nbsp; </td><td> &nbsp; pir|PIRSF029243 &nbsp; </td><td> &nbsp; 112 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
80 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1999" target="_blank">fig|83333.1.peg.1999</a> &nbsp; </td><td> &nbsp; fig|PF002424 &nbsp; </td><td> &nbsp; pir|PIRSF001484 &nbsp; </td><td> &nbsp; 35 &nbsp; </td><td> &nbsp; -5 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
81 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.2000" target="_blank">fig|83333.1.peg.2000</a> &nbsp; </td><td> &nbsp; fig|PF001996 &nbsp; </td><td> &nbsp; pir|PIRSF001454 &nbsp; </td><td> &nbsp; 15 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
82 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|4896.1.peg.2360" target="_blank">fig|4896.1.peg.2360</a> &nbsp; </td><td> &nbsp; fig|PF001996 &nbsp; </td><td> &nbsp; pir|PIRSF036936 &nbsp; </td><td> &nbsp; 122 &nbsp; </td><td> &nbsp; -344 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
83 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|4896.1.peg.2360" target="_blank">fig|4896.1.peg.2360</a> &nbsp; </td><td> &nbsp; fig|PF002743 &nbsp; </td><td> &nbsp; pir|PIRSF036936 &nbsp; </td><td> &nbsp; 241 &nbsp; </td><td> &nbsp; -339 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
84 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1998" target="_blank">fig|83333.1.peg.1998</a> &nbsp; </td><td> &nbsp; fig|PF002743 &nbsp; </td><td> &nbsp; pir|PIRSF000495 &nbsp; </td><td> &nbsp; 7 &nbsp; </td><td> &nbsp; -2 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
85 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1997" target="_blank">fig|83333.1.peg.1997</a> &nbsp; </td><td> &nbsp; fig|PF001687 &nbsp; </td><td> &nbsp; pir|PIRSF001410 &nbsp; </td><td> &nbsp; 27 &nbsp; </td><td> &nbsp; -81 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
86 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1997" target="_blank">fig|83333.1.peg.1997</a> &nbsp; </td><td> &nbsp; fig|PF003299 &nbsp; </td><td> &nbsp; pir|PIRSF001410 &nbsp; </td><td> &nbsp; 290 &nbsp; </td><td> &nbsp; -156 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
87 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.571" target="_blank">fig|272626.1.peg.571</a> &nbsp; </td><td> &nbsp; fig|PF003299 &nbsp; </td><td> &nbsp; pir|PIRSF001409 &nbsp; </td><td> &nbsp; 115 &nbsp; </td><td> &nbsp; -3 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
88 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1996" target="_blank">fig|83333.1.peg.1996</a> &nbsp; </td><td> &nbsp; fig|PF000244 &nbsp; </td><td> &nbsp; pir|PIRSF000518 &nbsp; </td><td> &nbsp; 316 &nbsp; </td><td> &nbsp; -5 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
89 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.2026" target="_blank">fig|272626.1.peg.2026</a> &nbsp; </td><td> &nbsp; fig|PF000244 &nbsp; </td><td> &nbsp; pir|PIRSF006455 &nbsp; </td><td> &nbsp; 327 &nbsp; </td><td> &nbsp; -3 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
90 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272623.1.peg.1241" target="_blank">fig|272623.1.peg.1241</a> &nbsp; </td><td> &nbsp; fig|PF000244 &nbsp; </td><td> &nbsp; pir|PIRSF005473 &nbsp; </td><td> &nbsp; 374 &nbsp; </td><td> &nbsp; -5 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
91 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.575" target="_blank">fig|272626.1.peg.575</a> &nbsp; </td><td> &nbsp; fig|PF001687 &nbsp; </td><td> &nbsp; pir|PIRSF019058 &nbsp; </td><td> &nbsp; 19 &nbsp; </td><td> &nbsp; -35 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
92 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|208964.1.peg.6" target="_blank">fig|208964.1.peg.6</a> &nbsp; </td><td> &nbsp; fig|PF001687 &nbsp; </td><td> &nbsp; pir|PIRSF004682 &nbsp; </td><td> &nbsp; 2 &nbsp; </td><td> &nbsp; -69 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
93 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|4896.1.peg.210" target="_blank">fig|4896.1.peg.210</a> &nbsp; </td><td> &nbsp; fig|PF001687 &nbsp; </td><td> &nbsp; pir|PIRSF017203 &nbsp; </td><td> &nbsp; 38 &nbsp; </td><td> &nbsp; -37 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
94 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|196164.1.peg.1995" target="_blank">fig|196164.1.peg.1995</a> &nbsp; </td><td> &nbsp; fig|PF003597 &nbsp; </td><td> &nbsp; pir|PIRSF004949 &nbsp; </td><td> &nbsp; 8 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
95 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|196164.1.peg.809" target="_blank">fig|196164.1.peg.809</a> &nbsp; </td><td> &nbsp; fig|PF003597 &nbsp; </td><td> &nbsp; pir|PIRSF500194 &nbsp; </td><td> &nbsp; 20 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
96 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1995" target="_blank">fig|83333.1.peg.1995</a> &nbsp; </td><td> &nbsp; fig|PF002941 &nbsp; </td><td> &nbsp; pir|PIRSF000099 &nbsp; </td><td> &nbsp; 11 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
97 :     </table>
98 :    
99 :     <h2>Histidine Biosynthesis compared to PFAM</h2>
100 :    
101 :     <table border=1>
102 :     <tr><th>peg<th>Family 1</th><th>Family 2</th><th>For</th><th>Against</th><th>Red</th></tr>
103 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1994" target="_blank">fig|83333.1.peg.1994</a> &nbsp; </td><td> &nbsp; fig|PF000056 &nbsp; </td><td> &nbsp; pfam|PF08029.1 &nbsp; </td><td> &nbsp; 17 &nbsp; </td><td> &nbsp; -2 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
104 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.573" target="_blank">fig|272626.1.peg.573</a> &nbsp; </td><td> &nbsp; fig|PF003447 &nbsp; </td><td> &nbsp; pfam|PF01634.8 &nbsp; </td><td> &nbsp; 2 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
105 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.574" target="_blank">fig|272626.1.peg.574</a> &nbsp; </td><td> &nbsp; fig|PF000991 &nbsp; </td><td> &nbsp; pfam|PF00587.14 &nbsp; </td><td> &nbsp; 4 &nbsp; </td><td> &nbsp; -4 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
106 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.2001" target="_blank">fig|83333.1.peg.2001</a> &nbsp; </td><td> &nbsp; fig|PF001505 &nbsp; </td><td> &nbsp; pfam|PF01502.8 &nbsp; </td><td> &nbsp; 93 &nbsp; </td><td> &nbsp; -106 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
107 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.2001" target="_blank">fig|83333.1.peg.2001</a> &nbsp; </td><td> &nbsp; fig|PF001505 &nbsp; </td><td> &nbsp; pfam|PF01503.7 &nbsp; </td><td> &nbsp; 39 &nbsp; </td><td> &nbsp; -35 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
108 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.2001" target="_blank">fig|83333.1.peg.2001</a> &nbsp; </td><td> &nbsp; fig|PF002226 &nbsp; </td><td> &nbsp; pfam|PF01502.8 &nbsp; </td><td> &nbsp; 39 &nbsp; </td><td> &nbsp; -38 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
109 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.2001" target="_blank">fig|83333.1.peg.2001</a> &nbsp; </td><td> &nbsp; fig|PF002226 &nbsp; </td><td> &nbsp; pfam|PF01503.7 &nbsp; </td><td> &nbsp; 96 &nbsp; </td><td> &nbsp; -117 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
110 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|5141.1.peg.8508" target="_blank">fig|5141.1.peg.8508</a> &nbsp; </td><td> &nbsp; fig|PF001505 &nbsp; </td><td> &nbsp; pfam|PF00815.9 &nbsp; </td><td> &nbsp; 283 &nbsp; </td><td> &nbsp; -347 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
111 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|5141.1.peg.8508" target="_blank">fig|5141.1.peg.8508</a> &nbsp; </td><td> &nbsp; fig|PF002226 &nbsp; </td><td> &nbsp; pfam|PF00815.9 &nbsp; </td><td> &nbsp; 286 &nbsp; </td><td> &nbsp; -360 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
112 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|5141.1.peg.8508" target="_blank">fig|5141.1.peg.8508</a> &nbsp; </td><td> &nbsp; fig|PF002941 &nbsp; </td><td> &nbsp; pfam|PF00815.9 &nbsp; </td><td> &nbsp; 2 &nbsp; </td><td> &nbsp; -194 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
113 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|5141.1.peg.8508" target="_blank">fig|5141.1.peg.8508</a> &nbsp; </td><td> &nbsp; fig|PF002941 &nbsp; </td><td> &nbsp; pfam|PF01502.8 &nbsp; </td><td> &nbsp; 122 &nbsp; </td><td> &nbsp; -578 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
114 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|5141.1.peg.8508" target="_blank">fig|5141.1.peg.8508</a> &nbsp; </td><td> &nbsp; fig|PF002941 &nbsp; </td><td> &nbsp; pfam|PF01503.7 &nbsp; </td><td> &nbsp; 122 &nbsp; </td><td> &nbsp; -578 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
115 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|4896.1.peg.2360" target="_blank">fig|4896.1.peg.2360</a> &nbsp; </td><td> &nbsp; fig|PF001996 &nbsp; </td><td> &nbsp; pfam|PF00117.15 &nbsp; </td><td> &nbsp; 122 &nbsp; </td><td> &nbsp; -336 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
116 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|4896.1.peg.2360" target="_blank">fig|4896.1.peg.2360</a> &nbsp; </td><td> &nbsp; fig|PF002743 &nbsp; </td><td> &nbsp; pfam|PF00117.15 &nbsp; </td><td> &nbsp; 1 &nbsp; </td><td> &nbsp; -78 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
117 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|4896.1.peg.2360" target="_blank">fig|4896.1.peg.2360</a> &nbsp; </td><td> &nbsp; fig|PF002743 &nbsp; </td><td> &nbsp; pfam|PF00977.10 &nbsp; </td><td> &nbsp; 241 &nbsp; </td><td> &nbsp; -340 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
118 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1997" target="_blank">fig|83333.1.peg.1997</a> &nbsp; </td><td> &nbsp; fig|PF001687 &nbsp; </td><td> &nbsp; pfam|PF00475.8 &nbsp; </td><td> &nbsp; 27 &nbsp; </td><td> &nbsp; -70 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
119 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|83333.1.peg.1997" target="_blank">fig|83333.1.peg.1997</a> &nbsp; </td><td> &nbsp; fig|PF003299 &nbsp; </td><td> &nbsp; pfam|PF00475.8 &nbsp; </td><td> &nbsp; 27 &nbsp; </td><td> &nbsp; -59 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
120 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|103690.1.peg.384" target="_blank">fig|103690.1.peg.384</a> &nbsp; </td><td> &nbsp; fig|PF003299 &nbsp; </td><td> &nbsp; pfam|PF00702.13 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; -62 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
121 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|243265.1.peg.1484" target="_blank">fig|243265.1.peg.1484</a> &nbsp; </td><td> &nbsp; fig|PF000244 &nbsp; </td><td> &nbsp; pfam|PF00815.9 &nbsp; </td><td> &nbsp; 264 &nbsp; </td><td> &nbsp; -399 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
122 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|243265.1.peg.1484" target="_blank">fig|243265.1.peg.1484</a> &nbsp; </td><td> &nbsp; fig|PF002941 &nbsp; </td><td> &nbsp; pfam|PF00155.9 &nbsp; </td><td> &nbsp; 239 &nbsp; </td><td> &nbsp; -347 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
123 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272626.1.peg.575" target="_blank">fig|272626.1.peg.575</a> &nbsp; </td><td> &nbsp; fig|PF001687 &nbsp; </td><td> &nbsp; pfam|PF02811.7 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; -35 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
124 :     </table>
125 :    
126 :     <h2>Leucine Degradation compared to PIR</h2>
127 :    
128 :     <table border=1>
129 :     <tr><th>peg<th>Family 1</th><th>Family 2</th><th>For</th><th>Against</th><th>Red</th></tr>
130 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.3860" target="_blank">fig|224308.1.peg.3860</a> &nbsp; </td><td> &nbsp; fig|PF002066 &nbsp; </td><td> &nbsp; pir|PIRSF006468 &nbsp; </td><td> &nbsp; 188 &nbsp; </td><td> &nbsp; -4 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
131 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|198094.1.peg.1301" target="_blank">fig|198094.1.peg.1301</a> &nbsp; </td><td> &nbsp; fig|PF002066 &nbsp; </td><td> &nbsp; pir|PIRSF000523 &nbsp; </td><td> &nbsp; 123 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
132 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2409" target="_blank">fig|224308.1.peg.2409</a> &nbsp; </td><td> &nbsp; fig|PF001207 &nbsp; </td><td> &nbsp; pir|PIRSF000152 &nbsp; </td><td> &nbsp; 26 &nbsp; </td><td> &nbsp; -14 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
133 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2409" target="_blank">fig|224308.1.peg.2409</a> &nbsp; </td><td> &nbsp; fig|PF002751 &nbsp; </td><td> &nbsp; pir|PIRSF000152 &nbsp; </td><td> &nbsp; 23 &nbsp; </td><td> &nbsp; -3 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
134 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272558.1.peg.213" target="_blank">fig|272558.1.peg.213</a> &nbsp; </td><td> &nbsp; fig|PF001158 &nbsp; </td><td> &nbsp; pir|PIRSF000152 &nbsp; </td><td> &nbsp; 31 &nbsp; </td><td> &nbsp; -147 &nbsp; </td><td> &nbsp; 5 &nbsp; </td></tr>
135 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2408" target="_blank">fig|224308.1.peg.2408</a> &nbsp; </td><td> &nbsp; fig|PF000067 &nbsp; </td><td> &nbsp; pir|PIRSF000155 &nbsp; </td><td> &nbsp; 37 &nbsp; </td><td> &nbsp; -2 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
136 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2408" target="_blank">fig|224308.1.peg.2408</a> &nbsp; </td><td> &nbsp; fig|PF001487 &nbsp; </td><td> &nbsp; pir|PIRSF000155 &nbsp; </td><td> &nbsp; 41 &nbsp; </td><td> &nbsp; -29 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
137 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|258594.1.peg.2850" target="_blank">fig|258594.1.peg.2850</a> &nbsp; </td><td> &nbsp; fig|PF000067 &nbsp; </td><td> &nbsp; pir|PIRSF036563 &nbsp; </td><td> &nbsp; 149 &nbsp; </td><td> &nbsp; -110 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
138 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|258594.1.peg.2850" target="_blank">fig|258594.1.peg.2850</a> &nbsp; </td><td> &nbsp; fig|PF001487 &nbsp; </td><td> &nbsp; pir|PIRSF036563 &nbsp; </td><td> &nbsp; 195 &nbsp; </td><td> &nbsp; -236 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
139 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|258594.1.peg.2850" target="_blank">fig|258594.1.peg.2850</a> &nbsp; </td><td> &nbsp; fig|PF002666 &nbsp; </td><td> &nbsp; pir|PIRSF036563 &nbsp; </td><td> &nbsp; 137 &nbsp; </td><td> &nbsp; -279 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
140 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2407" target="_blank">fig|224308.1.peg.2407</a> &nbsp; </td><td> &nbsp; fig|PF001388 &nbsp; </td><td> &nbsp; pir|PIRSF000432 &nbsp; </td><td> &nbsp; 31 &nbsp; </td><td> &nbsp; -1 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
141 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|211586.1.peg.2120" target="_blank">fig|211586.1.peg.2120</a> &nbsp; </td><td> &nbsp; fig|PF001388 &nbsp; </td><td> &nbsp; pir|PIRSF000433 &nbsp; </td><td> &nbsp; 132 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
142 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|227882.1.peg.4367" target="_blank">fig|227882.1.peg.4367</a> &nbsp; </td><td> &nbsp; fig|PF001864 &nbsp; </td><td> &nbsp; pir|PIRSF000432 &nbsp; </td><td> &nbsp; 197 &nbsp; </td><td> &nbsp; -176 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
143 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1463" target="_blank">fig|224308.1.peg.1463</a> &nbsp; </td><td> &nbsp; fig|PF003391 &nbsp; </td><td> &nbsp; pir|PIRSF000210 &nbsp; </td><td> &nbsp; 164 &nbsp; </td><td> &nbsp; -10 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
144 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224914.1.peg.145" target="_blank">fig|224914.1.peg.145</a> &nbsp; </td><td> &nbsp; fig|PF000100 &nbsp; </td><td> &nbsp; pir|PIRSF000210 &nbsp; </td><td> &nbsp; 22 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
145 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|257310.1.peg.2524" target="_blank">fig|257310.1.peg.2524</a> &nbsp; </td><td> &nbsp; fig|PF003391 &nbsp; </td><td> &nbsp; pir|PIRSF000212 &nbsp; </td><td> &nbsp; 769 &nbsp; </td><td> &nbsp; -263 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
146 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|119219.1.peg.4104" target="_blank">fig|119219.1.peg.4104</a> &nbsp; </td><td> &nbsp; fig|PF003391 &nbsp; </td><td> &nbsp; pir|PIRSF000350 &nbsp; </td><td> &nbsp; 840 &nbsp; </td><td> &nbsp; -288 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
147 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1830" target="_blank">fig|224308.1.peg.1830</a> &nbsp; </td><td> &nbsp; fig|PF000094 &nbsp; </td><td> &nbsp; pir|PIRSF000182 &nbsp; </td><td> &nbsp; 518 &nbsp; </td><td> &nbsp; -427 &nbsp; </td><td> &nbsp; 5 &nbsp; </td></tr>
148 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1830" target="_blank">fig|224308.1.peg.1830</a> &nbsp; </td><td> &nbsp; fig|PF002044 &nbsp; </td><td> &nbsp; pir|PIRSF000182 &nbsp; </td><td> &nbsp; 183 &nbsp; </td><td> &nbsp; -27 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
149 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224914.1.peg.1924" target="_blank">fig|224914.1.peg.1924</a> &nbsp; </td><td> &nbsp; fig|PF001705 &nbsp; </td><td> &nbsp; pir|PIRSF001591 &nbsp; </td><td> &nbsp; 102 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
150 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1824" target="_blank">fig|224308.1.peg.1824</a> &nbsp; </td><td> &nbsp; fig|PF003427 &nbsp; </td><td> &nbsp; pir|PIRSF001593 &nbsp; </td><td> &nbsp; 36 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
151 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1825" target="_blank">fig|224308.1.peg.1825</a> &nbsp; </td><td> &nbsp; fig|PF000095 &nbsp; </td><td> &nbsp; pir|PIRSF001406 &nbsp; </td><td> &nbsp; 5 &nbsp; </td><td> &nbsp; -1 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
152 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1826" target="_blank">fig|224308.1.peg.1826</a> &nbsp; </td><td> &nbsp; fig|PF000193 &nbsp; </td><td> &nbsp; pir|PIRSF001367 &nbsp; </td><td> &nbsp; 13 &nbsp; </td><td> &nbsp; -7 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
153 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|262316.1.peg.2310" target="_blank">fig|262316.1.peg.2310</a> &nbsp; </td><td> &nbsp; fig|PF000193 &nbsp; </td><td> &nbsp; pir|PIRSF015582 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; -42 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
154 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1829" target="_blank">fig|224308.1.peg.1829</a> &nbsp; </td><td> &nbsp; fig|PF000104 &nbsp; </td><td> &nbsp; pir|PIRSF001552 &nbsp; </td><td> &nbsp; 291 &nbsp; </td><td> &nbsp; -584 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
155 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1829" target="_blank">fig|224308.1.peg.1829</a> &nbsp; </td><td> &nbsp; fig|PF001188 &nbsp; </td><td> &nbsp; pir|PIRSF001552 &nbsp; </td><td> &nbsp; 29 &nbsp; </td><td> &nbsp; -41 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
156 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272558.1.peg.1137" target="_blank">fig|272558.1.peg.1137</a> &nbsp; </td><td> &nbsp; fig|PF001188 &nbsp; </td><td> &nbsp; pir|PIRSF001550 &nbsp; </td><td> &nbsp; 30 &nbsp; </td><td> &nbsp; -11 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
157 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.3904" target="_blank">fig|224308.1.peg.3904</a> &nbsp; </td><td> &nbsp; fig|PF000160 &nbsp; </td><td> &nbsp; pir|PIRSF000859 &nbsp; </td><td> &nbsp; 15 &nbsp; </td><td> &nbsp; -13 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
158 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.3904" target="_blank">fig|224308.1.peg.3904</a> &nbsp; </td><td> &nbsp; fig|PF000359 &nbsp; </td><td> &nbsp; pir|PIRSF000859 &nbsp; </td><td> &nbsp; 13 &nbsp; </td><td> &nbsp; -25 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
159 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|262316.1.peg.3861" target="_blank">fig|262316.1.peg.3861</a> &nbsp; </td><td> &nbsp; fig|PF000359 &nbsp; </td><td> &nbsp; pir|PIRSF000858 &nbsp; </td><td> &nbsp; 28 &nbsp; </td><td> &nbsp; -99 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
160 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|262316.1.peg.3861" target="_blank">fig|262316.1.peg.3861</a> &nbsp; </td><td> &nbsp; fig|PF000530 &nbsp; </td><td> &nbsp; pir|PIRSF000858 &nbsp; </td><td> &nbsp; 57 &nbsp; </td><td> &nbsp; -74 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
161 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|262316.1.peg.3861" target="_blank">fig|262316.1.peg.3861</a> &nbsp; </td><td> &nbsp; fig|PF003527 &nbsp; </td><td> &nbsp; pir|PIRSF000858 &nbsp; </td><td> &nbsp; 57 &nbsp; </td><td> &nbsp; -64 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
162 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.3903" target="_blank">fig|224308.1.peg.3903</a> &nbsp; </td><td> &nbsp; fig|PF000530 &nbsp; </td><td> &nbsp; pir|PIRSF012663 &nbsp; </td><td> &nbsp; 16 &nbsp; </td><td> &nbsp; -21 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
163 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.3903" target="_blank">fig|224308.1.peg.3903</a> &nbsp; </td><td> &nbsp; fig|PF003527 &nbsp; </td><td> &nbsp; pir|PIRSF012663 &nbsp; </td><td> &nbsp; 13 &nbsp; </td><td> &nbsp; -7 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
164 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1717" target="_blank">fig|224308.1.peg.1717</a> &nbsp; </td><td> &nbsp; fig|PF001265 &nbsp; </td><td> &nbsp; pir|PIRSF500082 &nbsp; </td><td> &nbsp; 6 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
165 :     </table>
166 :    
167 :     <h2>Leucine Degradation compared to PFAM</h2>
168 :    
169 :     <table border=1>
170 :     <tr><th>peg<th>Family 1</th><th>Family 2</th><th>For</th><th>Against</th><th>Red</th></tr>
171 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.3860" target="_blank">fig|224308.1.peg.3860</a> &nbsp; </td><td> &nbsp; fig|PF002066 &nbsp; </td><td> &nbsp; pfam|PF01063.8 &nbsp; </td><td> &nbsp; 3 &nbsp; </td><td> &nbsp; -1 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
172 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2409" target="_blank">fig|224308.1.peg.2409</a> &nbsp; </td><td> &nbsp; fig|PF001207 &nbsp; </td><td> &nbsp; pfam|PF00676.9 &nbsp; </td><td> &nbsp; 16 &nbsp; </td><td> &nbsp; -11 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
173 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2409" target="_blank">fig|224308.1.peg.2409</a> &nbsp; </td><td> &nbsp; fig|PF002751 &nbsp; </td><td> &nbsp; pfam|PF00676.9 &nbsp; </td><td> &nbsp; 16 &nbsp; </td><td> &nbsp; -3 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
174 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|272558.1.peg.213" target="_blank">fig|272558.1.peg.213</a> &nbsp; </td><td> &nbsp; fig|PF001158 &nbsp; </td><td> &nbsp; pfam|PF00676.9 &nbsp; </td><td> &nbsp; 11 &nbsp; </td><td> &nbsp; -122 &nbsp; </td><td> &nbsp; 5 &nbsp; </td></tr>
175 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2408" target="_blank">fig|224308.1.peg.2408</a> &nbsp; </td><td> &nbsp; fig|PF000067 &nbsp; </td><td> &nbsp; pfam|PF02779.12 &nbsp; </td><td> &nbsp; 17 &nbsp; </td><td> &nbsp; -1 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
176 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2408" target="_blank">fig|224308.1.peg.2408</a> &nbsp; </td><td> &nbsp; fig|PF000067 &nbsp; </td><td> &nbsp; pfam|PF02780.9 &nbsp; </td><td> &nbsp; 17 &nbsp; </td><td> &nbsp; -1 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
177 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2408" target="_blank">fig|224308.1.peg.2408</a> &nbsp; </td><td> &nbsp; fig|PF001487 &nbsp; </td><td> &nbsp; pfam|PF02779.12 &nbsp; </td><td> &nbsp; 17 &nbsp; </td><td> &nbsp; -26 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
178 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.2408" target="_blank">fig|224308.1.peg.2408</a> &nbsp; </td><td> &nbsp; fig|PF001487 &nbsp; </td><td> &nbsp; pfam|PF02780.9 &nbsp; </td><td> &nbsp; 17 &nbsp; </td><td> &nbsp; -26 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
179 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224914.1.peg.2120" target="_blank">fig|224914.1.peg.2120</a> &nbsp; </td><td> &nbsp; fig|PF000067 &nbsp; </td><td> &nbsp; pfam|PF00676.9 &nbsp; </td><td> &nbsp; 145 &nbsp; </td><td> &nbsp; -3 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
180 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224914.1.peg.2120" target="_blank">fig|224914.1.peg.2120</a> &nbsp; </td><td> &nbsp; fig|PF001487 &nbsp; </td><td> &nbsp; pfam|PF00676.9 &nbsp; </td><td> &nbsp; 190 &nbsp; </td><td> &nbsp; -56 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
181 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|258594.1.peg.2850" target="_blank">fig|258594.1.peg.2850</a> &nbsp; </td><td> &nbsp; fig|PF000067 &nbsp; </td><td> &nbsp; pfam|PF00364.11 &nbsp; </td><td> &nbsp; 149 &nbsp; </td><td> &nbsp; -106 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
182 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|258594.1.peg.2850" target="_blank">fig|258594.1.peg.2850</a> &nbsp; </td><td> &nbsp; fig|PF001487 &nbsp; </td><td> &nbsp; pfam|PF00364.11 &nbsp; </td><td> &nbsp; 195 &nbsp; </td><td> &nbsp; -233 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
183 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|258594.1.peg.2850" target="_blank">fig|258594.1.peg.2850</a> &nbsp; </td><td> &nbsp; fig|PF002666 &nbsp; </td><td> &nbsp; pfam|PF00364.11 &nbsp; </td><td> &nbsp; 137 &nbsp; </td><td> &nbsp; -279 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
184 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|258594.1.peg.2850" target="_blank">fig|258594.1.peg.2850</a> &nbsp; </td><td> &nbsp; fig|PF002666 &nbsp; </td><td> &nbsp; pfam|PF02779.12 &nbsp; </td><td> &nbsp; 1 &nbsp; </td><td> &nbsp; -67 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
185 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|258594.1.peg.2850" target="_blank">fig|258594.1.peg.2850</a> &nbsp; </td><td> &nbsp; fig|PF002666 &nbsp; </td><td> &nbsp; pfam|PF02780.9 &nbsp; </td><td> &nbsp; 1 &nbsp; </td><td> &nbsp; -67 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
186 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|227377.1.peg.612" target="_blank">fig|227377.1.peg.612</a> &nbsp; </td><td> &nbsp; fig|PF001864 &nbsp; </td><td> &nbsp; pfam|PF00198.12 &nbsp; </td><td> &nbsp; 9 &nbsp; </td><td> &nbsp; -94 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
187 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|227377.1.peg.612" target="_blank">fig|227377.1.peg.612</a> &nbsp; </td><td> &nbsp; fig|PF001864 &nbsp; </td><td> &nbsp; pfam|PF00364.11 &nbsp; </td><td> &nbsp; 11 &nbsp; </td><td> &nbsp; -98 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
188 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|227377.1.peg.612" target="_blank">fig|227377.1.peg.612</a> &nbsp; </td><td> &nbsp; fig|PF001864 &nbsp; </td><td> &nbsp; pfam|PF02817.6 &nbsp; </td><td> &nbsp; 11 &nbsp; </td><td> &nbsp; -99 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
189 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1463" target="_blank">fig|224308.1.peg.1463</a> &nbsp; </td><td> &nbsp; fig|PF003391 &nbsp; </td><td> &nbsp; pfam|PF00070.16 &nbsp; </td><td> &nbsp; 4 &nbsp; </td><td> &nbsp; -3 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
190 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1463" target="_blank">fig|224308.1.peg.1463</a> &nbsp; </td><td> &nbsp; fig|PF003391 &nbsp; </td><td> &nbsp; pfam|PF07992.2 &nbsp; </td><td> &nbsp; 4 &nbsp; </td><td> &nbsp; -3 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
191 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1463" target="_blank">fig|224308.1.peg.1463</a> &nbsp; </td><td> &nbsp; fig|PF003391 &nbsp; </td><td> &nbsp; pfam|PF02852.11 &nbsp; </td><td> &nbsp; 19 &nbsp; </td><td> &nbsp; -2 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
192 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224914.1.peg.145" target="_blank">fig|224914.1.peg.145</a> &nbsp; </td><td> &nbsp; fig|PF000100 &nbsp; </td><td> &nbsp; pfam|PF00070.16 &nbsp; </td><td> &nbsp; 22 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
193 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224914.1.peg.145" target="_blank">fig|224914.1.peg.145</a> &nbsp; </td><td> &nbsp; fig|PF000100 &nbsp; </td><td> &nbsp; pfam|PF07992.2 &nbsp; </td><td> &nbsp; 22 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
194 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224914.1.peg.145" target="_blank">fig|224914.1.peg.145</a> &nbsp; </td><td> &nbsp; fig|PF000100 &nbsp; </td><td> &nbsp; pfam|PF02852.11 &nbsp; </td><td> &nbsp; 22 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; 0 &nbsp; </td></tr>
195 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|257310.1.peg.2524" target="_blank">fig|257310.1.peg.2524</a> &nbsp; </td><td> &nbsp; fig|PF003391 &nbsp; </td><td> &nbsp; pfam|PF00364.11 &nbsp; </td><td> &nbsp; 765 &nbsp; </td><td> &nbsp; -255 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
196 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|119219.1.peg.4104" target="_blank">fig|119219.1.peg.4104</a> &nbsp; </td><td> &nbsp; fig|PF003391 &nbsp; </td><td> &nbsp; pfam|PF00403.14 &nbsp; </td><td> &nbsp; 840 &nbsp; </td><td> &nbsp; -281 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
197 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1830" target="_blank">fig|224308.1.peg.1830</a> &nbsp; </td><td> &nbsp; fig|PF000094 &nbsp; </td><td> &nbsp; pfam|PF00441.13 &nbsp; </td><td> &nbsp; 37 &nbsp; </td><td> &nbsp; -219 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
198 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1830" target="_blank">fig|224308.1.peg.1830</a> &nbsp; </td><td> &nbsp; fig|PF000094 &nbsp; </td><td> &nbsp; pfam|PF02770.8 &nbsp; </td><td> &nbsp; 82 &nbsp; </td><td> &nbsp; -247 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
199 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1830" target="_blank">fig|224308.1.peg.1830</a> &nbsp; </td><td> &nbsp; fig|PF000094 &nbsp; </td><td> &nbsp; pfam|PF02771.6 &nbsp; </td><td> &nbsp; 104 &nbsp; </td><td> &nbsp; -250 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
200 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1830" target="_blank">fig|224308.1.peg.1830</a> &nbsp; </td><td> &nbsp; fig|PF002044 &nbsp; </td><td> &nbsp; pfam|PF00441.13 &nbsp; </td><td> &nbsp; 17 &nbsp; </td><td> &nbsp; -11 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
201 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1830" target="_blank">fig|224308.1.peg.1830</a> &nbsp; </td><td> &nbsp; fig|PF002044 &nbsp; </td><td> &nbsp; pfam|PF02770.8 &nbsp; </td><td> &nbsp; 17 &nbsp; </td><td> &nbsp; -11 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
202 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1830" target="_blank">fig|224308.1.peg.1830</a> &nbsp; </td><td> &nbsp; fig|PF002044 &nbsp; </td><td> &nbsp; pfam|PF02771.6 &nbsp; </td><td> &nbsp; 19 &nbsp; </td><td> &nbsp; -12 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
203 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|227882.1.peg.5280" target="_blank">fig|227882.1.peg.5280</a> &nbsp; </td><td> &nbsp; fig|PF003232 &nbsp; </td><td> &nbsp; pfam|PF02785.8 &nbsp; </td><td> &nbsp; 2 &nbsp; </td><td> &nbsp; -30 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
204 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|227882.1.peg.5280" target="_blank">fig|227882.1.peg.5280</a> &nbsp; </td><td> &nbsp; fig|PF003232 &nbsp; </td><td> &nbsp; pfam|PF00364.11 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; -21 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
205 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|227882.1.peg.5280" target="_blank">fig|227882.1.peg.5280</a> &nbsp; </td><td> &nbsp; fig|PF003232 &nbsp; </td><td> &nbsp; pfam|PF00289.11 &nbsp; </td><td> &nbsp; 2 &nbsp; </td><td> &nbsp; -30 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
206 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|227882.1.peg.5280" target="_blank">fig|227882.1.peg.5280</a> &nbsp; </td><td> &nbsp; fig|PF003232 &nbsp; </td><td> &nbsp; pfam|PF02786.6 &nbsp; </td><td> &nbsp; 2 &nbsp; </td><td> &nbsp; -30 &nbsp; </td><td> &nbsp; 4 &nbsp; </td></tr>
207 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1826" target="_blank">fig|224308.1.peg.1826</a> &nbsp; </td><td> &nbsp; fig|PF000193 &nbsp; </td><td> &nbsp; pfam|PF00682.8 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; -7 &nbsp; </td><td> &nbsp; 3 &nbsp; </td></tr>
208 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|262316.1.peg.2310" target="_blank">fig|262316.1.peg.2310</a> &nbsp; </td><td> &nbsp; fig|PF000193 &nbsp; </td><td> &nbsp; pfam|PF03328.4 &nbsp; </td><td> &nbsp; 0 &nbsp; </td><td> &nbsp; -34 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
209 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1829" target="_blank">fig|224308.1.peg.1829</a> &nbsp; </td><td> &nbsp; fig|PF000104 &nbsp; </td><td> &nbsp; pfam|PF00501.15 &nbsp; </td><td> &nbsp; 4 &nbsp; </td><td> &nbsp; -280 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
210 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.1829" target="_blank">fig|224308.1.peg.1829</a> &nbsp; </td><td> &nbsp; fig|PF001188 &nbsp; </td><td> &nbsp; pfam|PF00501.15 &nbsp; </td><td> &nbsp; 5 &nbsp; </td><td> &nbsp; -11 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
211 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.3904" target="_blank">fig|224308.1.peg.3904</a> &nbsp; </td><td> &nbsp; fig|PF000160 &nbsp; </td><td> &nbsp; pfam|PF01144.12 &nbsp; </td><td> &nbsp; 9 &nbsp; </td><td> &nbsp; -11 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
212 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|224308.1.peg.3904" target="_blank">fig|224308.1.peg.3904</a> &nbsp; </td><td> &nbsp; fig|PF000359 &nbsp; </td><td> &nbsp; pfam|PF01144.12 &nbsp; </td><td> &nbsp; 7 &nbsp; </td><td> &nbsp; -19 &nbsp; </td><td> &nbsp; 1 &nbsp; </td></tr>
213 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|262316.1.peg.3861" target="_blank">fig|262316.1.peg.3861</a> &nbsp; </td><td> &nbsp; fig|PF000530 &nbsp; </td><td> &nbsp; pfam|PF01144.12 &nbsp; </td><td> &nbsp; 12 &nbsp; </td><td> &nbsp; -38 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
214 :     <tr><td> &nbsp; <a href="../protein.cgi?prot=fig|262316.1.peg.3861" target="_blank">fig|262316.1.peg.3861</a> &nbsp; </td><td> &nbsp; fig|PF003527 &nbsp; </td><td> &nbsp; pfam|PF01144.12 &nbsp; </td><td> &nbsp; 9 &nbsp; </td><td> &nbsp; -23 &nbsp; </td><td> &nbsp; 2 &nbsp; </td></tr>
215 :     </table>
216 :    
217 :    
218 : overbeek 1.1
219 :    
220 :    
221 :    
222 :    

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