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File Rev. Age Author Last log entry
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css/        
spacetree-1.6/        
48-complete.png  1.5  12 years  parrello  Human rhinovirus infections normally last only 7 days, but with homeopathic reme...
48-error.png  1.5  12 years  parrello  Human rhinovirus infections normally last only 7 days, but with homeopathic reme...
48-in_progress.png  1.5  12 years  parrello  Human rhinovirus infections normally last only 7 days, but with homeopathic reme...
48-info.png  1.5  12 years  parrello  Human rhinovirus infections normally last only 7 days, but with homeopathic reme...
48-not_started.png  1.5  12 years  parrello  Human rhinovirus infections normally last only 7 days, but with homeopathic reme...
48-queued.png  1.5  12 years  parrello  Human rhinovirus infections normally last only 7 days, but with homeopathic reme...
48-title.png  1.5  12 years  parrello  Human rhinovirus infections normally last only 7 days, but with homeopathic reme...
700_Fig1_58o348CGColor_832006.jpg  1.2  13 years  hwang  additional jpeg changes.
700_Fig5_10To18Mini58CG832006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_10_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_11_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_12_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_13_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_14_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_15_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_16_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_17_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_18_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_1To9Mini58CG832006.jpg  1.1  13 years  hwang  JPGS are from Carol's TyrA. Html pages were changed to fix layout
700_Fig5_1_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_2_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_3_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_4_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_5_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_6_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_7_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_8_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
700_Fig5_9_1252006.jpg  1.3  12 years  disz  Latest Jensen changes
AlignmentRow.html  1.1  14 years  parrello  *** empty log message ***
ArrowThing.png  1.1  13 years  parrello  Added for tree control.
Attributes.html  1.8  13 years  overbeek  RAE: moving PIRSF to links
Attributes_tmpl.html  1.7  12 years  parrello  Fixed a bad style sheet link.
Basic_tmpl.html  1.1  13 years  parrello  Added for use by the testing utilities.
CCluster_tmpl.html  1.6  13 years  parrello  Converted to new template syntax.
CompareTyrAPanels.html  1.6  12 years  hwang  Added fig headers
CompleteSeedGenomes.html  1.2  14 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
Constructs.html  1.2  14 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
DataFlow.gif  1.1  15 years  parrello  no message
DataFlow.html  1.1  15 years  parrello  no message
DebugFragment.html  1.3  14 years  parrello  Removed the obsolete "Show Mode" debugging tool.
Directory.php  1.1  14 years  parrello  *** empty log message ***
DirectoryTemplate.html  1.2  13 years  parrello  Converted to new template syntax.
DocIndex.html  1.1  14 years  parrello  Converted "htm" web pages to "html" pages.
ErrorPage.html  1.3  14 years  parrello  Converted "htm" web pages to "html" pages.
FIG.gif  1.3  15 years  olson  Recommit unbroken of these, with binary flag turned on.
FIG.html  1.2  15 years  overbeek  not-for-profit -> nonprofit
FIGBG.png  1.1  15 years  parrello  no message
FIGsmall.gif  1.6  15 years  parrello  no message
FIGsmall.png  1.1  15 years  parrello  no message
FigBG.gif  1.1  15 years  parrello  no message
FigBG.jpg  1.1  15 years  parrello  no message
Georgia.css  1.23  13 years  parrello  Added code-marking styles.
Google.gif  1.1  12 years  parrello  New Wiki button.
Homologs_tmpl.html  1.5  13 years  parrello  Converted to new template syntax.
ListThing.png  1.1  13 years  parrello  Added for tree control.
Makefile  1.12  11 years  olson  remove -p in cp.
NMPDR.css  1.9  12 years  parrello  Added new form styles.
ProteinFamilies.html  1.6  13 years  overbeek  RAE: correcting space in command
ProteinFamiliesExamples.html  1.3  14 years  overbeek  RAE: Changes to Protein Families
Protein_tmpl.html  1.22  13 years  overbeek  Indexing and page template fixes.
README  1.1.1.1  16 years  efrank   import
SimBlockDiagram.gif  1.1  15 years  parrello  Added diagrams used by the Similarity Block documentation.
SimBlockDisplay.html  1.3  14 years  parrello  *** empty log message ***
SimBlockForm.html  1.3  14 years  parrello  Converted to a pure template approach.
SimBlockGenomeFragment.html  1.2  14 years  parrello  *** empty log message ***
SimBlockPattern.html  1.3  14 years  parrello  Converted to a pure template approach.
SimBlockPatternRow.html  1.3  14 years  parrello  Converted to a pure template approach.
SimBlockPieces.html  1.2  14 years  parrello  Converted to a form that allows the user to request the display of a block.
SimBlockPiecesFragment.html  1.2  14 years  parrello  Converted to a form that allows the user to request the display of a block.
SimBlockSnipFragment.html  1.1  14 years  parrello  Cleaned up formatting of similarity block web pages,
SimMatch.gif  1.1  15 years  parrello  Added diagrams used by the Similarity Block documentation.
SimProcess.gif  1.1  15 years  parrello  Added diagrams used by the Similarity Block documentation.
SimplePage.html  1.1  14 years  parrello  *** empty log message ***
SproutBase.html  1.1  15 years  parrello  no message
SproutTest.html  1.19  13 years  parrello  Made the frames adjustable.
StyleTest.html  1.1  14 years  parrello  Converted "htm" web pages to "html" pages.
TestForms.html  1.34  12 years  parrello  Fixed links to point to anno-2. Removed obsolete helpers.
TyrAExtended.html  1.14  12 years  disz  Latest Jensen changes
TyrAPanels.html  1.5  12 years  disz  Latest Jensen changes
TyrARep.html  1.7  12 years  disz  Latest Jensen changes
annotation.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
arrow.jpg  1.1  13 years  hwang   TyrAPanels is all panels from Carol/Jensen.
arrow1.jpg  1.1  13 years  hwang  Adding files on TyrA from Carol/Jensen
arrow2.jpg  1.1  13 years  hwang  Adding files on TyrA from Carol/Jensen
assign.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
assviat.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
blank.html  1.1  15 years  parrello  no message
button-cl.png  1.1  14 years  olson  New buttons.
button-fc.png  1.2  15 years  olson  Make some buttons transparent.
button-g.png  1.2  15 years  olson  Make some buttons transparent.
button-gbrowse.png  1.1  15 years  olson  New buttons for Nmpdr search results page.
button-h.png  1.1  11 years  parrello  Hint button graphic.
button-nmpdr.png  1.1  15 years  olson  New buttons for Nmpdr search results page.
button-pins-1.png  1.1  14 years  olson  New buttons.
button-pins-2.png  1.1  14 years  olson  New buttons.
button-s.png  1.2  15 years  olson  Make some buttons transparent.
button-search.png  1.1  15 years  olson  Add more icons.
button-seed.png  1.1  15 years  olson  New buttons for Nmpdr search results page.
button-ss.png  1.1  14 years  olson  New buttons.
checkss.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
cluster.jpg  1.1  14 years  olson  New stuff from Toby.
conflict_resolution.html  1.3  14 years  redwards  adding help functions all over the place
cyanoseed.tail  1.1  14 years  redwards  Initial commit of organisms.cgi which allows separate entry pages for different ...
cyanoseed_tail.html  1.1  14 years  redwards  another piece for the css and stuff
dfc_ifc_notes.html  1.2  13 years  overbeek  RAE: updating IFC/DFC
diagram_overlay.png  1.4  14 years  olson  Transparent green.
dnd.css  1.3  13 years  hwang  dnd file are for the attributes drag and drop features. mm_menu.js is for tyra m...
drag_and_drop.js  1.2  13 years  hwang  dnd file are for the attributes drag and drop features. mm_menu.js is for tyra m...
enqueue.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
frame.css  1.8  13 years  paczian  fixed table style
frame.tmpl  1.5  13 years  paczian  *** empty log message ***
function_colors.html  1.1  14 years  golsen  Explain the new colors for the function in protein similarities
gbrowse.gif  1.1  15 years  mkubal  w/buttons
gene.jpg  1.1  14 years  olson  New stuff from Toby.
genome.jpg  1.1  14 years  olson  New stuff from Toby.
gff.html  1.1  13 years  overbeek  RAE: Adding the gff help html
group_name_desc_seq.html  1.2  12 years  disz  Jensen file
help_RobE.html  1.5  13 years  redwards  adding metagenomics help
help_for_assignments_and_rules.html  1.2  15 years  overbeek  fixes from DOE meeting
help_front_page.html  1.1  14 years  olson  Help for new frontpage.
html.hdr  1.20  11 years  olson  Remove link to kaput subsys.info.
html.tail  1.1.1.1  16 years  efrank   import
layout.js  1.9  13 years  paczian  fixed minor bugs
layout2.js  1.1  13 years  paczian  *** empty log message ***
locatepegs.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
mcslogo.gif  1.1  15 years  parrello  no message
minus.gif  1.1  13 years  parrello  Added for tree control.
mm_menu.js  1.1  13 years  hwang  dnd file are for the attributes drag and drop features. mm_menu.js is for tyra m...
nmpdr.gif  1.1  15 years  mkubal  w/buttons
nmpdr.js  1.2  11 years  parrello  Added new methods for wiki support.
nmpdrlogo3b-smaller.png  1.1  12 years  parrello  Added for new Wiki.
notinss.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
overlap.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
p2p_updates.html  1.1  16 years  overbeek  p2p doc
pir.html  1.6  14 years  redwards  Added creation of the download file from pir.cgi
plus.gif  1.1  13 years  parrello  Added for tree control.
power.jpg  1.1  14 years  olson  New stuff from Toby.
processsavedassign.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
robots.txt  1.1  12 years  olson  Add robots.txt support.
sand.ico  1.1  12 years  parrello  Sandbox icon.
seed.gif  1.1  15 years  mkubal  w/buttons
seedtips.html  1.8  13 years  redwards  adding Ross help on making trees
similarities_options.html  1.4  14 years  golsen  Add options to Similarities to override Max expand when asking for FIG IDs. It g...
similarity_region_colors.html  1.1  15 years  golsen  Description of colors of sims regions
subsys_hope_kegg_integration.html  1.2  14 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
subsystem.jpg  1.1  14 years  olson  New stuff from Toby.
subsystem_small.gif  1.1  14 years  paczian  *** empty log message ***
title.png  1.1  12 years  parrello  Common images.
tjpzoom.js  1.1  12 years  hwang  This file is free to use & created by http://tjp.hu
trash.ico  1.1  12 years  parrello  Common images.
tyrACGTree.html  1.5  12 years  disz  Latest Jensen changes
tyrASubsystem.html  1.9  12 years  disz  Added SEED link
wac_login.png  1.2  11 years  parrello  converted to binary
workonss.jpg  1.1  14 years  redwards  HTML pages describing conflict resolution
AlignmentAndTreeHelp.html (dead) No revisions exist on rast_rel_2008_09_30
Diagrammer.swf (dead) No revisions exist on rast_rel_2008_09_30
DirectoryTemplate.htm (dead) No revisions exist on rast_rel_2008_09_30
DocIndex.htm (dead) No revisions exist on rast_rel_2008_09_30
ERDBFinder.js (dead) No revisions exist on rast_rel_2008_09_30
ERDBTest.html (dead) No revisions exist on rast_rel_2008_09_30
ERDB_DBD.xsd (dead) No revisions exist on rast_rel_2008_09_30
Method.html (dead) No revisions exist on rast_rel_2008_09_30
RTMg.html (dead) No revisions exist on rast_rel_2008_09_30
SC.js (dead) No revisions exist on rast_rel_2008_09_30
SEEDClient.js (dead) No revisions exist on rast_rel_2008_09_30
SEED_administration_issues.html (dead) No revisions exist on rast_rel_2008_09_30
SetPassword.htm (dead) No revisions exist on rast_rel_2008_09_30
SetPassword.html (dead) No revisions exist on rast_rel_2008_09_30
SproutDBD.html (dead) No revisions exist on rast_rel_2008_09_30
StyleTest.htm (dead) No revisions exist on rast_rel_2008_09_30
ask_CG01.aln (dead) No revisions exist on rast_rel_2008_09_30
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ask_FilterSelect.js (dead) No revisions exist on rast_rel_2008_09_30
ask_Orphan.fasta (dead) No revisions exist on rast_rel_2008_09_30
ask_TabView.css (dead) No revisions exist on rast_rel_2008_09_30
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ask_all.aln (dead) No revisions exist on rast_rel_2008_09_30
ask_alpha.nwk (dead) No revisions exist on rast_rel_2008_09_30
ask_alpha_tree.pdf (dead) No revisions exist on rast_rel_2008_09_30
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