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Fri Sep 30 20:14:42 2005 UTC (14 years, 4 months ago) by overbeek
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fixes to HOPS

<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<title>FIG Tutorials</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">

<h1>FIG Tutorials</h1>
<p>The following tutorials are available:</p>
  <li><a href="why_use_the_SEED.html">Why Use the SEED (a VERY basic tutorial)?</a>, a guide 
       to locating relevant gene clusters.</li>
  <li><a href="GettingStarted.html">Getting Started</a>, a guide to basic SEED
  <li><a href="SEED_administration_issues.html">SEED Administration</a>, a guide to maintaining your SEED installation.</li>
  <li><a href="API.html">API Tutorial</a>, a primer on programmatic use of the
    SEED system.</li>
  <li><a href="DataMining.html">Data Mining</a>, a guide to data mining with
  <li><a href="phylogeny.html">Phylogeny Tools</a>, notes relating to a nascent effort to support phylogenetic analysis.</li>
  <li><a href="subsystem_tutorial.html">Subsystem Tutorial</a>, a tutorial to annotating subsystems.</li>
  <li><a href="subsystem_tutorial2.html">Subsystem Tutorial: a Continuation</a>, comments on where this might lead.</li>
  <li><a href="conflict_resolution.html">Subsystem conflict resolution</a></li>
<p>You may also find autogenerated POD documentation for the following modules:</p>
  <li><a href="pod_docs/FIG.html">FIG</a></li>
  <li><a href="pod_docs/P2Pupdate.html">P2Pupdate</a></li>
  <li><a href="pod_docs/Subsystem.html">Subsystem</a></li>
<p>Random documentation and position papers:</p>
<li><a href="1KG.html">Project to Annotate 1000 Genomes and Produce 1000 Stoichiometric Matrices</a>
<li><a href="exchange_of_assignments_and_annotations_Sept17_2004.html">Exchange of Assignments and Annotations</a>
<li><a href="SEED_functions.html">Some Comments on Gene Functions</a>
<li><a href="bioinf_first_classes.html">Comments on a Nonstandard First Class in Bioinformatics</a>

<h2>HOPS: public depository of Hypotheses and Open Problems identified by SubSystem analysis</h2>
To get to the web site where we maintain a collection of open problems, conjectures and results
relating to missing genes <a href=http://yersinia.uchicago.edu/FIG/HOPSS.cgi>here</a>.


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