from FigKernelPackages import FIG
import sys, string

fig = FIG.FIG()
id1_ix = 0
ln1_ix = 12
id2_ix = 1
ln2_ix = 13
iden_ix = 2
psc_ix = 10
ali_ln_ix = 3
mismatches_ix = 4
gaps_ix = 5
bsc_ix = 11
b1_ix = 6
e1_ix = 7
b2_ix = 8
e2_ix = 9
bit_score_ix = 11
tool_ix = 14
def2_ix = 15
ali_ix = 16


def die(msg):
	print msg
	sys.exit(0)

if len(sys.argv) != 5:
	die("usage: show_similarities PEG CutOFF MaxReturned Expand")


peg = sys.argv[1]
cutoff = sys.argv[2]
max = sys.argv[3]
expand = sys.argv[4]

sims = fig.sims(peg, max, cutoff, "all", expand)

for sim in sims:
    ln1    = str(sim[ln1_ix])
    id2    = str(sim[id2_ix])
    ln2    = str(sim[ln2_ix])
    pscore = str(sim[psc_ix])
    iden   = str(sim[iden_ix])
    b1     = str(sim[b1_ix])
    e1     = str(sim[e1_ix])
    b2     = str(sim[b2_ix])
    e2     = str(sim[e2_ix])
    func2  = fig.function_of(id2)
    print string.join((ln1, id2, ln2, pscore, iden, b1, e1, b2, e2, func2[1]), "\t")