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Revision 1.1 - (download) (as text) (annotate)
Thu Jun 10 14:51:56 2004 UTC (15 years, 6 months ago) by disz
Branch: MAIN
CVS Tags: merge-bodev_news-3, rast_rel_2014_0912, rast_rel_2008_06_18, rast_rel_2008_06_16, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, Root-bobdev_news, rast_rel_2008_09_30, caBIG-13Feb06-00, rast_rel_2010_0526, rast_rel_2014_0729, merge-trunktag-bobdev_news-1, rast_rel_2009_05_18, caBIG-05Apr06-00, rast_rel_2009_0925, rast_rel_2010_1206, rast_rel_2010_0118, caBIG-00-00-00, rast_rel_2009_02_05, rast_rel_2011_0119, rast_rel_2008_12_18, merge-trunktag-bodev_news-3, merge-bobdev_news-2, merge-bobdev_news-1, rast_rel_2008_10_09, rast_release_2008_09_29, rast_rel_2008_04_23, rast_rel_2008_08_07, rast_rel_2009_07_09, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, rast_rel_2008_10_29, rast_rel_2009_03_26, merge-trunktag-bobdev_news-2, rast_rel_2008_11_24, HEAD
Branch point for: Branch-bobdev_news
Python version of tutorial code

from FigKernelPackages import FIG
import sys
import string


def die(msg):
	print msg
	sys.exit(0)

fig = FIG.FIG()
sofar = {}

def get_unique_abbreviation(which, sofar):
    nonunique = fig.abbrev(which);
    nonunique = string.rstrip(string.replace(nonunique," ",  ""), ".")
    if not sofar.has_key(nonunique):
	sofar[nonunique] = 1
    n = sofar[nonunique]
    sofar[nonunique] = sofar[nonunique] + 1
    return (nonunique+"."+str(n))

for genome in fig.genomes("complete"):
    which   = fig.genus_species(genome)
    abbrev  = get_unique_abbreviation(which,sofar);
    version = fig.genome_version(genome);
    print "%s\t%s\t%s\t%s" % (genome, abbrev, version, which)


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