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Revision 1.1 - (view) (download) (as text)
| 1 : | disz | 1.1 | from FigKernelPackages import FIG |
| 2 : | import sys | ||
| 3 : | import string | ||
| 4 : | |||
| 5 : | |||
| 6 : | def die(msg): | ||
| 7 : | print msg | ||
| 8 : | sys.exit(0) | ||
| 9 : | |||
| 10 : | fig = FIG.FIG() | ||
| 11 : | sofar = {} | ||
| 12 : | |||
| 13 : | def get_unique_abbreviation(which, sofar): | ||
| 14 : | nonunique = fig.abbrev(which); | ||
| 15 : | nonunique = string.rstrip(string.replace(nonunique," ", ""), ".") | ||
| 16 : | if not sofar.has_key(nonunique): | ||
| 17 : | sofar[nonunique] = 1 | ||
| 18 : | n = sofar[nonunique] | ||
| 19 : | sofar[nonunique] = sofar[nonunique] + 1 | ||
| 20 : | return (nonunique+"."+str(n)) | ||
| 21 : | |||
| 22 : | for genome in fig.genomes("complete"): | ||
| 23 : | which = fig.genus_species(genome) | ||
| 24 : | abbrev = get_unique_abbreviation(which,sofar); | ||
| 25 : | version = fig.genome_version(genome); | ||
| 26 : | print "%s\t%s\t%s\t%s" % (genome, abbrev, version, which) | ||
| 27 : |
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