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Revision 1.1 - (download) (as text) (annotate)
Thu Jun 10 14:51:56 2004 UTC (15 years, 6 months ago) by disz
Branch: MAIN
CVS Tags: merge-bodev_news-3, rast_rel_2014_0912, rast_rel_2008_06_18, rast_rel_2008_06_16, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, Root-bobdev_news, rast_rel_2008_09_30, caBIG-13Feb06-00, rast_rel_2010_0526, rast_rel_2014_0729, merge-trunktag-bobdev_news-1, rast_rel_2009_05_18, caBIG-05Apr06-00, rast_rel_2009_0925, rast_rel_2010_1206, rast_rel_2010_0118, caBIG-00-00-00, rast_rel_2009_02_05, rast_rel_2011_0119, rast_rel_2008_12_18, merge-trunktag-bodev_news-3, merge-bobdev_news-2, merge-bobdev_news-1, rast_rel_2008_10_09, rast_release_2008_09_29, rast_rel_2008_04_23, rast_rel_2008_08_07, rast_rel_2009_07_09, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, rast_rel_2008_10_29, rast_rel_2009_03_26, merge-trunktag-bobdev_news-2, rast_rel_2008_11_24, HEAD
Branch point for: Branch-bobdev_news
Python version of tutorial code

from FigKernelPackages import FIG
import sys

fig = FIG.FIG()

def die(msg):
	print msg
	sys.exit(0)

if len(sys.argv) != 2:
	die("usage: contigs_for_genome Genome")

genome = sys.argv[1]

contigs =  fig.all_contigs(genome)

for contig in contigs:
    len = fig.contig_ln(genome,contig)
    if len >= 50:
        seq = fig.dna_seq(genome,contig+"_1_50")
        print contig+"\t"+len+"\t"+seq


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